Array 1 3441-3869 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTK01000029.1 Streptococcus agalactiae strain ILRI128 Contig29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 3441 32 100.0 34 ................................ AAGAGATGCAAGTGTGGCAATGAAGAATTTTACA 3507 32 100.0 35 ................................ ACCAACCTTGGGCGGTAGACTTTGACAAAAAGTCA 3574 32 100.0 33 ................................ AGCTTGGTAGCCTCATTGATAGCTTGTATTGTT 3639 32 100.0 34 ................................ AGTATTCCAAGTCAATGTTTTATGTAGCAATAAT 3705 32 100.0 37 ................................ TGGAATGGTGCTGAATGGATTATCAATTCTTTTAGCG 3774 32 93.8 33 .....C..............A........... TAATAATGATTATCTTTTTATTAATTCATTATC 3839 31 78.1 0 A....-.............T..A.T..T..C. | ========== ====== ====== ====== ================================ ===================================== ================== 7 32 96.0 34 GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Left flank : CTAAAGCAATACGTGGTGATTTGGAATCCTATCCACCATTTTTAATCTAGGAGTAAAATTATGATGGTTTTAGTAACCTATGATGTCAATACGAAGACTGTAGCAGGTAGGAGACGCCTTCGTCACGTCGCAAAACTTTGTGTTGATTATGGTCAACGTGTACAAAATTCTGTTTTTGAGTGTTCAGTGACTCCAGCTGAGTTTGTGGAGATAAAAAACGAGTTGCTGACAATCATCGACCAGAAATCAGATAGTATCCGATTTTATTTACTTGGTAAAAATTGGCAAAATCGTGTGGAAACTATTGGCAAAAATGATAGTTATGATCCTGATATAGGGGTATTACTTCTATAAACATTTATATGTGAATTCGGGTCACACATGAAAAAGCGGAGTATTCGCGCTAAAAAAAAGAAAATAGTAGTCAAAATCTAGTTTTTATTGAACCAACTTGTTTAATAAATTCTTGGTTTTAGTTATAAACGGTGCAATCGCGCACT # Right flank : TATTTTAAATCTTTCAAATTATGCTATTAAAATTGTCTAACTTTTAACAGAGATGCGATTGATTTGTATTAATCCCTAAAAAGATAAATTGCTAGTTCTTATGCTATAATAACTCTATCAATGTCAAAGGAGTTTTTATGTCACAGGTAAGGTATGGTGTTGTGTCAACGGCAAAGGTGGCGCCTCGTTTTATTGAAGGAGTCCGCTTAGCAGGAAATGGTGAAGTTGTGGCTGTATCGAGTCGAACTCTTGAGTCTGCGCAAGCTTTTGCCAACAAATATCATCTCCCAAAGGCTTACGATAAGTTAGAGGATATGTTAGCAGATGAGTCAATTGATGTGATTTATGTGGCAACAATTAATCAAGACCATTATAAAGTTGCTAAAGCAGCTCTGTTAGCGGGAAAACATGTGTTGGTAGAAAAGCCTTTCACATTGACTTACGACCAAGCGAATGAATTATTCGCTTTGGCAGAAAGTTGTAATCTGTTTTTGATGGAG # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTTGCGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [6,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.80,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 167-1324 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYTK01000047.1 Streptococcus agalactiae strain ILRI128 Contig47, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 167 36 100.0 30 .................................... GTCCACTTGCAAAGGAATATGGACGAATTG 233 36 100.0 30 .................................... TGAAAAACAAGACCAAGCCAAGACTTTATC 299 36 100.0 30 .................................... TAGCTTTTGATTAAAAGTAAGCTGGCTTTG 365 36 100.0 30 .................................... GACTATTTCCCATCAATGGACGGCGTGCGC 431 36 100.0 30 .................................... AACTCTAAGAGACCTCTATCGAGATTTCTT 497 36 100.0 30 .................................... TCCATTTATGTATTTCTCCTTAAAAATAAA 563 36 100.0 30 .................................... CTAACCCTTCTTTGATATCTGCTTCTATTT 629 36 100.0 30 .................................... AATAAAACACAACTCCGAAAATGGTTATAT 695 36 100.0 30 .................................... TTTACAAAAAGTTCCGTCTCGTGGTCATTT 761 36 100.0 30 .................................... AGAAGAAGATAAGTTTCGTATTTACTTTAA 827 36 100.0 30 .................................... TGCTCGTGTATCTGACAATGCTCGTGTATC 893 36 100.0 30 .................................... TCCAAATCGTCCAAAGTGATAATAACCAAT 959 36 100.0 30 .................................... TAAAAATGCAGTTACTGTTACAGGTAATAT 1025 36 100.0 30 .................................... AATGCTTGCAACGATTACAAGACATCAGGT 1091 36 100.0 30 .................................... AGCAATAATGTTTACAAAACCACTAATATA 1157 36 100.0 30 .................................... GATGCCTATCAGACAGCCAAGCGAGCGACT 1223 36 100.0 30 .................................... CTCGTGAGATAGCGCAAGGTATGTCCGTTG 1289 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 18 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAATAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAGG # Right flank : CTTGAATTGTAGAATAGATGTCTACTGGCTTGTTTTAGAGCTGCGCGGTTATTATGCTAGGGCATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTAGCAAGCTAACGAAATCACCCCAGTTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGCAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCGATAAAAGAGATATGAAAGACTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTATGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCACTAATACTTGCAAGCTTACAAGGAAAGCAGTGAAGAATCTATCCATAATCAACTAACAGCTATGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //