Array 1 5262-2944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAALMM010000007.1 Clostridium perfringens strain CP-27 7, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 5261 29 100.0 36 ............................. CATATTTTTTAGGTACTTTAATGTTAGTTAAATTTT 5196 29 100.0 36 ............................. ATAGTATCAGTACAAGTAATATTTAATAAAACCAAT 5131 29 100.0 36 ............................. TATTAGTCATAGCACTATACAAAGTAAATTTGGGAG 5066 29 100.0 36 ............................. AAATATGATTATATATTACAAGGAGGTTTAAATATA 5001 29 100.0 37 ............................. TTAGCTAAAATTCTTCTAGGACAGTTTTTTCTACTAG 4935 29 100.0 36 ............................. GGTTTATATACTCAAACTCTCGAATCCTCTGTTCAG 4870 29 100.0 36 ............................. AGGCTTATTTCACTCAATGATTTACACCTTCATTCA 4805 29 100.0 36 ............................. AGATATTGTTTAATAGATAGATTAGAAGTATATAAG 4740 29 100.0 36 ............................. TATTATTATATGGTCAGTAGTCTACTTTACAGATGA 4675 29 100.0 36 ............................. AAATTTAAATATAAAGATAGAAGAAAAATATCTATT 4610 29 100.0 38 ............................. GAGAGAAAAAATCTCAATAACAGTTCGGTCTACTCCAA 4543 29 100.0 37 ............................. TTAGAAGTAGAAATAGTAGAAACTGGAGAACTAGGAG 4477 29 100.0 39 ............................. TATGAAGTTATAAAACCTAATTTCATGCAAAAAGAGGCT 4409 29 100.0 36 ............................. CGTTGATAATTATAAACTTTTATTATATCACCACAT 4344 29 100.0 37 ............................. AATTTTTTATGGATGGACAAAAGTTTTAAAAAAATAG 4278 29 100.0 36 ............................. CTATCCATATAGTTTCCATTTGCTATAGCTACAACA 4213 29 100.0 36 ............................. GTTCGTGATTGTATTGTTTTTGATAGTGAAGATGAT 4148 29 100.0 36 ............................. CCTAAAATAGTAAAAATAGCAGCATTAATATCTCTC 4083 29 100.0 36 ............................. CACTTTTAGCCCCTAACTAGGAATGCGGGCGGTTGC 4018 29 100.0 36 ............................. TTCATTAACTTATAATAGTTATGAACTAAATGCTCC 3953 29 100.0 36 ............................. TACTTAGAGAATGCTTTTTCAAGTACTATAGAGTAT 3888 29 100.0 37 ............................. TTACAAATCCATTCATCACACTATACCCTCCATAACT 3822 29 100.0 36 ............................. ATAGTATAAATATCAATCATTTATTTAATTTATTTC 3757 29 100.0 36 ............................. AATGGTAATCAAGCCTTATCAGGATATGAATATAAG 3692 29 100.0 36 ............................. ATCATAGTACCCATTATTCCAATTCCAATTGGAAGT 3627 29 100.0 36 ............................. CATAAGGACGAGTTATACAGTAATAAGGTTACTATA 3562 29 100.0 36 ............................. TGTTTTTATTCTTAAAGATGGAGCTATTATTTCAGA 3497 29 100.0 37 ............................. TTTATCATGATAAAGTTGGAGTTGTAGAGAGATTTGT 3431 29 100.0 36 ............................. TAATGTTTTTCCTCCACTTTACTCTTTATAATATTG 3366 29 100.0 37 ............................. ATGTATTGTGATGGTGTTACAAATGCAACTATTTTAA 3300 29 100.0 37 ............................. TTAAAGACATATGATCTAGACAATGAAATGGATGAAG 3234 29 100.0 37 ............................. CTTTCATAGTACTTTCCAACTTTATGCATATAATCCT 3168 29 100.0 36 ............................. GTAGAAGTACCAAATTTAATAAGTATAGAAATATCT 3103 29 96.6 36 ................A............ ATTTTTTGCTCTTACCCTTGCCTTCCCATTTGAGCG 3038 29 89.7 37 A......C...........A......... TCATCTGATAAAACTCTTAAAATAATATATTGATTAC 2972 29 82.8 0 ............T.....T.GG......A | ========== ====== ====== ====== ============================= ======================================= ================== 36 29 99.1 36 GTTTTATATTAACTATGAGGAATGTAAAT # Left flank : AAACTTAGAAATATAATATCTTTTGATATAATACCTCAATGTATTTATGAACAAAATGAATCAGAAATTGAAGGCTTACTTGAAATTATAAATGATGAAAAAACAGATAAAATAAATAGAATAAAATCCATAGATAAAATAAAAAGTTTTACAGTATCAGTTGGGCAATATGATATTGAACTTTTAAGAAATAAACTTATTATGGAGTTAGAAGTAGGAAAGTATGAAAGAATTCCAGTATATAAATGTAATTATTCAGAGTTAGGATTTACTAGAAACACCAAAGAAGATGTATATGATAATTTCATATAAAACTAATTTTGCAGTAGATCTATTTTCTTATAATACTAGCTGTAACCAAGTAATATCAATGGTTAGAAGAAGATTTTTATTGATACACTAAAACATTACTGATGGTCTACTGCAAAATTTTAATATTTATGATAAAATTAACAAGAGAGAATGAGGCTATTACTAGTTTTTAGCATTTTAAATTTGGG # Right flank : AAATAAAAAAAGCATCTTAAAAAGATACCTTTAAACTTAGAATTTTTTGTTTCAATAGCAAGTGCACCTAATGCAGATATATTTCCAACAATGTTTTGGCTTGCTTTATATACAACATTGCCATTTCAGAGTGTAATAAATCTTTTAGGCGGTTATAACATAGAGAGTCTATCATACTTAATACTTCCAATATACATGGTAACATTAAGCTTATTAAGTTATAAGGTACTTAAATTTAAACCTCAAAAAAATAAACAAGATAAGTAATTTTAGTTTTATAATAAGAATTAAAAAGTAAAATGGACATGATATCTGTCCATTTTTACTTAATTATTAATATATACTTATTAAATTAAATTTAGAACTTTAAATCTAATAATCTATGCATTTAGCAGTTTACATCTAATAGCTCCCTTGAAATTTCCTCAAACCTTTCATCAGATATACCAAGTTTTTTCTTAAATATATCATCATCAATTCTAGCAACAATAACCTCATTA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATATTAACTATGAGGAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTATATTAACTAAGTGGTATGTAAAG with 90% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //