Array 1 15978-12223 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCB01000021.1 Pseudoalteromonas ruthenica strain S3245 S3245_S35_L001_R1_001__paired__contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ======================================= ================== 15977 28 100.0 32 ............................ TCAACAAGGGGGCAGAAGCAGTCAGCGACAGT 15917 28 100.0 32 ............................ AGGTTGGCAAATTTAAGATTGCTTCTCGAGAA 15857 28 100.0 32 ............................ TGCTGGCCTTTCTTACTGTGAACGCTATTTTT 15797 28 100.0 32 ............................ CGTTGTCTCGCCCAGGTGCTCGCTAAATGCGT 15737 28 100.0 32 ............................ GCGCCAAAAGGTGGCCGCATGATGCAGCCAAT 15677 28 100.0 32 ............................ GGTTTCAGAAATCATAGGAAGATTAGTTGATG 15617 28 100.0 32 ............................ TTCACCAAGTGCACAAAAGTCTGGTATGGCCA 15557 28 100.0 32 ............................ TTCTGCGTGCCGTAGACGATGCCTAGTGCGTT 15497 28 100.0 32 ............................ ATCGATAAACAGGTTTTGCGCAAATTGGTGGC 15437 28 100.0 32 ............................ TGTTCGCCCTGATAACGTGCCAGTCACTTCTG 15377 28 100.0 32 ............................ TTCTGAATCTTTATCTAATCAACGCAATAAGA 15317 28 100.0 32 ............................ TTTGAATGTTGAACACTTCGTTTCTGTCTTTG 15257 28 100.0 32 ............................ TGCTGCTCGACAATATCCTCATCTGATAATTC 15197 28 100.0 32 ............................ TTCTGGAGAAACTAGCCAAAGAGAGGAAAATG 15137 28 100.0 32 ............................ TCTCAAACTCTCCAAGAGTGCACAGGTTATGT 15077 28 100.0 32 ............................ AGCCAGCAACCGACACCCTCAGACATGATTGC 15017 28 100.0 32 ............................ TGACTTAATGATTAACAACACAACGGGCAAGT 14957 28 100.0 32 ............................ AGCCTTCGCGCTCGTAGACATCAATGTGACCC 14897 28 100.0 32 ............................ AAGATGAAAATAATCACGAAGGCCACGACTCC 14837 28 100.0 32 ............................ ATGAAAAAAGTAAACATCTTAAAAAGCAAACT 14777 28 100.0 32 ............................ AACGGCGTAAGCTCCAATGCAAAATGACATAA 14717 28 100.0 32 ............................ TTGACGGTATTATCGACCAGTTATCAGGTTCC 14657 28 100.0 32 ............................ TGTCTATCAACGTTATTCGATAGCCAATTGAC 14597 28 100.0 32 ............................ AATAGCCTTACGTGTACGAAGCGACAGCGGCA 14537 28 100.0 32 ............................ TGATGACTGTGAGTAATATTTACAAGACTCAC 14477 28 100.0 32 ............................ AATGGTATCTCAGCCTTGAATTTACCTCTCGA 14417 28 100.0 32 ............................ ACTCAAACGATGTGATAATAGCTTTGCATGTT 14357 28 100.0 32 ............................ TGCAAATAATGCTCTTCTTCACCACTGCGAAG 14297 28 100.0 32 ............................ ACCCCTAGACCCCGAAGAAAACTGCTATGAAA 14237 28 96.4 32 .................T.......... AAAAGGCTGGCGTTATTTCGCTTACGGAGTCG 14177 28 100.0 32 ............................ TGAATATGACATCCCTGTTGTTGTCGGAGAAA 14117 28 100.0 32 ............................ TGTGCGCTGGTCGGTCCCGCAGTTATCGCAGA 14057 28 100.0 33 ............................ AGTCATAACCTTCTTCAAGTAGCAACTGAAACT 13996 28 100.0 32 ............................ TTACTATAGAAATCTGCTTGATTCGGTTTCGG 13936 28 100.0 32 ............................ GTCAGTTTCAGCGAGCGAGTTTTCTTCGCGTG 13876 28 100.0 32 ............................ TGGCTTATATCAGCGAGTATCGCCTCAGCGGC 13816 28 100.0 32 ............................ AGCAAGCAAAGCGGGTATTGCAAGTAAAGCAG 13756 28 100.0 32 ............................ TTATCGTTGCTTTCTGCGCGGGCCTGGTTGAT 13696 28 100.0 32 ............................ TATAAAGAAGCTTACAACGCGGTGCTGTGTGC 13636 28 100.0 32 ............................ ATACTTAGCTCGGGCCGCTTCTGAACCTTCTG 13576 28 100.0 32 ............................ TTTGGAAAAGCAATAAACGTTAATGCAGTGAA 13516 28 100.0 32 ............................ GTCAGCATTCAAATAAACACACTGCAAAGCAA 13456 28 100.0 32 ............................ AAATGCGGGGCAAACTGCAATCAAATTTAGAG 13396 28 100.0 32 ............................ ATCGCACCCCCGTTGAAGTGGTGAACGGCAAG 13336 28 100.0 32 ............................ TCGAACAACTCGCGGATTACATCACGGCCAAG 13276 28 100.0 32 ............................ ACCAAGCGCTTTGCAATAAAGATGATGAGTTT 13216 28 96.4 32 ...T........................ ATAAACGTGTAGTGGTGGCTGCGGCCAATAAA 13156 28 100.0 31 ............................ ATAACACTAGGTCTTGCTTTAAGACGTTTGC 13097 28 100.0 32 ............................ TACTCCCAAGTAATGGCAATAGGCAAGTTAAA 13037 28 100.0 32 ............................ ATCCGGCGGAATCAGCGGTAGCGGGGGCCATG 12977 28 100.0 32 ............................ AAGTTAAGGGCGGTTCGCTGGTGTCTGAGTCG 12917 28 96.4 32 .............T.............. GGTGCGAAATACATCACCGACAGCCTGGGCTA 12857 28 100.0 32 ............................ CGATTCTAATGGCGATGGTGTTTTAGATAATC 12797 28 100.0 32 ............................ TTTGGAGTCGTATGGTCGTATCAGCGCTTTTA 12737 28 100.0 32 ............................ TGGCAAATTCTTTAAACGGCTTTTGCTGAGAT 12677 28 100.0 32 ............................ AAACCGTCAGGCAACGCAAAATAAAGAAGTTA 12617 28 96.4 32 .................T.......... CAATGAGCTATAAAGTTAGAAAGCTTGGTGAT 12557 28 100.0 32 ............................ TATCAATTTGGAGCATGTAAGCGCCGCCGGTG 12497 28 100.0 32 ............................ TTGTCTCGGGTGCGGGCAGGGTCGAAACCAAT 12437 28 100.0 32 ............................ AGCCAAAGGCACGGGGCGCTTCCCCTAGATGA 12377 28 100.0 32 ............................ GTTTAAATTTCTGATGCACGATAACAACGGGC 12317 28 92.9 39 ................AT.......... TTTATAATTTATAATTTGTGAGCCATGATTGTCTCTAAT 12250 28 75.0 0 ...T.....T...T.....C....TC.G | ========== ====== ====== ====== ============================ ======================================= ================== 63 28 99.3 32 CTTCACTGCCGAACAGGCAGCTTAGAAA # Left flank : GTACCAGAAGACGTAACATGGGTGAGTTTTACTCGTCAGCATGTTAAATCACCTGGGCGTATTGATCGTGAGATGCGAGGAAAGGCTGAACGGTGGTCGGCTAAAAGTGGTAAGCCTTTAGTTGAATGCTTAGCAGAGCTAGAAAGCACCAAACCTTCTTCAAAATGTGACTTACCTTTTGTTTATTTACATAGTCAACAAACAAAGCAACGTTCACCAGACACCAATAGTAAATACCCTCTGTTTATTGCGTTAGCAAAAGTTGAAATTGACCAACAAGGAGTTTTCGATTGTTATGGTCTTAGCGCAAAATCAAATGGAGATAGAGAGTTGGGCTGTGTGCCACAGTTCTAACAAATAAAGGATTTTTTCCCCTTTATTTTTGTTCTTTAAAAATTTGCTTAAAATACAGTGTGTTGCAACATCCTGTGAAATTAAGGTGAAACTGGGTTTTTATCTTAATAGCTTGTTGCAACTTACTTTTTTTCATTTACTCTATA # Right flank : TGGGTTTGATGTTTTTGAGTTGTGTGTCGTTGAGTGGTTTAACCGTTTTTGCCATATCTACTATTCCCTGAAGGCCTTTAAACTTAAGGCTTTGGCGCAGCGACGTACTACGAGAACGAACACTATGTACTAACTTAGTACATGAAGCAGTACATAAACAACTGAATTTCAAAAAACGTGGGCGTACATTACAGGCATTAAAAAACCCGCTAAGTCTTTATTCTCAGCGGGTTTTAAACGTTTTCGAACTTAATCGAACAGTGAAGTGGTGGAGCTGGGGGGATTTGAACCCCCGTCCGGAAAACCTCGACCATCGGTCCTACATGTTTAGTGTCGTCTTTTGGTTAACCTTTGAGTCTCGGACGCACACGATAAACAAAGGCGAGGCCGCTTAGTTTTAACCCTTCAACCCCGGCCAGGGTTTCCGTAGCGAGTCTGTGTAGGGTGACACTTCAGAACCGGGTCCACAGACATACACCGGAGAAGTGCTAGCGGGCTAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACTGCCGAACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGAACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 43050-42805 **** Predicted by CRISPRDetect 2.4 *** >NZ_PNCB01000015.1 Pseudoalteromonas ruthenica strain S3245 S3245_S35_L001_R1_001__paired__contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================= ================== 43049 28 92.9 45 .......................G.A.. GATTTAGTGTAGGTAAGGCTTTTAGCCTTACAAAACAAGTTTCTC 42976 28 100.0 43 ............................ CGGGATTGGGCCAAGCCCAACCTACAGTTTAGGTTGGTTTGTT 42905 28 100.0 45 ............................ CGAGATTGGGCTAAAGCCCAACCCACAGGTTCCGCCAGATGTGTT 42832 28 85.7 0 ......................C.CCT. | ========== ====== ====== ====== ============================ ============================================= ================== 4 28 94.6 45 GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Left flank : CAAGTTTGCGTGAATTAAAGCAGCTTGCAAGCACTCATGGCTTTGCTGATATCGCCGCAAATGAAGAAGATGCTGACACCTTATTACAGCTGCTATTTTGCATGGTGATAGAGCCGACGATTGGCCAGCAACAGCCGTGTTTTGTGTATCACTTTCCGGCCTCGCAAGCGGCACTAGCGCGTCTTCATGAGCAAGACCCACGCGTTGCCGGGCGTTTTGAGCTGTATTACCAAGGGCAAGAGCTCGCTAATGGCTTTAATGAGCTGACCGACGCCAATGAACAGCGCCAGCGCTTTGCCAATGACAACAATAAACGTATTGCTAAAGGTCTTGAGCCCGTAGCCTTGGATGAAAACCTACTAGCAGCACTGGATGCCGGCCTACCACAATGTGCCGGAGTCGCCCTCGGAGTGGATCGTCTCGTGATGATTGCCTGCGGCAAAAAGCATATTCGCGAAGTGCTCAGTTTCGACATCGAACGCGCCTAACCTCAAATTATT # Right flank : TAAATAAACCGAATTCCAGTACGGGTATAATCGCACACTAGAGACAATCCCTTTTCGCAATGGGTTGGCAACGATGTACCTGGCTATGTGAATGCGCTGCTCATCCTCACGCAAAGCGTGGTCATAAAACCCGCTTTGCCAAACTTTACCGCGACGCTGTAATTGACGATTAACCATGGCTGCGGTGCAACCTTTTAGGTGCCGTATACAAGCGCTAAGATCGCTATGGTGCAGTAACACAAGCCCATGGAAGTGGTCTGGCATTAAGACCCAGGTTAACCATTGGCAGCCGCAAGCCTGCTCATTAGTTGTAATCGTGGTGCAAAATAGCTGTGCTAGTTTCGCAGAGGCAAAAAATGGTGTGCGTTTGTAACAACAAAAAGTAATAAAATACTCGCGGTGAATTTGCGAATAACGTCCTTTTAATAAATCACTATAAGGCATATTCAGCTCCTTTGAATATGGTGGACATTTAATTATAGCTCGAGAGTTACAAGGTT # Questionable array : NO Score: 2.60 # Score Detail : 1:0, 2:0, 3:0, 4:0.74, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGCAAGGCTTCAGCCTTGCAAAGCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.30,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //