Array 1 1148396-1149218 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043414.1 Escherichia coli strain EC42405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1148396 29 100.0 33 ............................. GCGGTAAAATTGTTGCTACCGTCTGGCCCTTGC 1148458 29 100.0 32 ............................. ACGGTGCAGGATCTGTAATTCTTGCTCGCGAT 1148519 29 100.0 32 ............................. AGTTATCAGGATTATTCCCGCTCCGCCGCCAG 1148580 29 100.0 32 ............................. TCGTTTTTGTGGTGGGAGTGTGCGGATTGGTA 1148641 29 100.0 32 ............................. GCTGACATTGTCAGCTATAACCTTACAATGTG 1148702 29 100.0 32 ............................. ACGTCCCGCTATTTCCTGGACAGTGTGTAGCG 1148763 29 100.0 32 ............................. GCGGCGCTAACGTGATAATCACGATCAATTAT 1148824 29 100.0 32 ............................. CGGGCGTTAACCTTTTTATAGGCATCTTCCTT 1148885 29 100.0 32 ............................. GCTTGCAGCAGCTGCGCCAACATCTGAATACG 1148946 29 100.0 32 ............................. CTTTTTCCCGTGACAAGATCCAGTTAACTGTT 1149007 29 100.0 32 ............................. CATCACTGGACGCCCATTTGAATAACTCACAG 1149068 29 100.0 32 ............................. ATTCAGCAAATAGCGAATTTCATAAATATGAT 1149129 29 96.6 32 .T........................... TACGTTAAACGCCATCTGTCATGGGTCGTCAT 1149190 29 93.1 0 .T..........................A | ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCACGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGCAACTGGCGTTTGTCGATGCAAACACATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTGCTCATTTATATTCTTTGTCGCCTCTGAAAAACCTCCATTTTGCCCGTCCTGGACTAATCATTATCATTCTCTACAAATTCTCTGGCGTTAATTTTTCGCTGGAGTGAAAATTATTGCAGTGAAGTTTGGTAGATTTTAGTGGGTATAGAGTTATCTTAAACATTTACCTTTTTAATCAATGGATTAAGTGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATCCTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCTGTACTTGTAATAAGCAACATATCCACATAACACCTCATGTTCAAAATAGTTCCCCATGCCAGATAAGTTCACAATTATCGATACAAAAAATCAAATTTAATCAAAGTGTTATATGTATAATCCTTAAACCGTTAAGAAATTTTAATATATTATTTTTTTAATATTAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTGTATTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 1174925-1175990 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP043414.1 Escherichia coli strain EC42405 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1174925 29 100.0 32 ............................. TGGATTATGACGCCAGAGAGCTTCCTGTTTGC 1174986 29 100.0 32 ............................. CTGGCTAATAACATCCCACTGAATATTATTTC 1175047 29 100.0 32 ............................. AGGTGTGGCATGCGGGGAATTATGATCCGGTA 1175108 29 100.0 32 ............................. TGACAACGGCCGGCCGCTCTTTTTGCGGTCAT 1175169 29 100.0 33 ............................. ATCATCGGCATCATCTCGTGATACTCATCCGGC 1175231 29 100.0 32 ............................. CCCAGGCTTTACGTGAGCTGGCGGATGTGGCC 1175292 29 96.6 31 ............................A TACGGTCAAGCGATATCAGGGGTACTGTGTC 1175352 29 100.0 32 ............................. GGCGCCGCATCTTTATCGTAAAGCATGTAAAG 1175413 29 100.0 32 ............................. ACCGCTCACACCCAGACAAGCGCCACTAACGT 1175474 29 100.0 32 ............................. AACGCCGCATCAGCTAAATACGCTAAAAAAAT 1175535 29 100.0 32 ............................. CGGCTGATACTCAGGAGCAGGCCAGAGAGCGT 1175596 29 100.0 32 ............................. TACCACCTGTGTATTGAGTTACGTCGCCGGGG 1175657 29 100.0 32 ............................. GAGCTTCATCGGTGGTTCTGGGAGCAACGGGA 1175718 29 100.0 32 ............................. GCACAAGTGACTACATCAAGGATGGGGAATGG 1175779 29 100.0 32 ............................. ATTAACATTGCAATTGAATTGACGCGTATGAG 1175840 29 100.0 32 ............................. CAGGCAGCACGGCGGGTTTTGCCCGGATATTT 1175901 29 100.0 32 ............................. CAAAACCAATAGGTGCTTTCCACATTGCAGAA 1175962 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 18 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCCGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCAGCTATCCCGGAACCTGAAACGCTGGGTGATAGTGGTCACCGGGGGCGCAGCGGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCGATCTGGCTACTGGAAGTGCGTGCTGGTGTTTATGTTGGTGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCCCAACTGGCAGGTTGCGGAAATGTGGTCATGGCCTGGGCGACCAATACCGAGTCGGGTTTTGAATTTCAGACCTGGGGTGAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGGTTGGTTTCGTTTCTTCCTGTTGAGAATCAATAAGTTACCCGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAAATTGTTTAAAAACAGATACGTATGCTTAGT # Right flank : GCTCTCGGTTCTGGGGTACTGTTACCCATAACTGAGCTCCCCCGCGTCAGCGGGGGAACTCCCAGCTCCCATTTTCAAACGCCTCATGACGCCTTCACCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGCGCCTTATCAATATGCTGTTGATTATCAAGCCTTACATCATGCCAGCTATTTCCCGCCGGGAAGGCCGGTGTTTTTGCGCGTTGCTGATAACCATCCTTATTTCCAAGATTCCAGTTGGTCGCCTCCACCGAAAGTACCGCAATACCGGCTTTGTCGAAAACTTCTGCATCATTACAACACCCGGTGCCTTTCGGATAGTTTTTATTCAAACCTGGATTTGTTGTCGCTGCAATCCCATGATTACGCGCAATTGCCAGCGCTCGATCACGGGTTAATTTCCTGACAGCCTCTGGTGTATTTACACCACTATTAAAATACAATTTATCGCCAAC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //