Array 1 267446-265962 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036318.1 Rosistilla oblonga strain Mal33 chromosome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 267445 36 100.0 36 .................................... CGCCTGCTGCGATTCGGATTCGATGTTCGAATTAGA 267373 36 100.0 37 .................................... TTGTAATTGGCGATTGTTCGCGGCTTCCAATCCGATC 267300 36 100.0 35 .................................... ACCGAGCCGGAGCACGAGCAGAACCTTTTGATCGA 267229 36 100.0 36 .................................... GAGAATCCCCTCAGCGTGGGCGTCGCGCAACTCCTC 267157 36 100.0 35 .................................... CATCATCCGCGACAGGGCGGCCGAGCTGTAGGCAG 267086 36 100.0 37 .................................... ATCTGCTCGAACGACTCTCCCTCATAGCAGTCCGGCT 267013 36 100.0 36 .................................... AGGAATCGCTCAGGATCCTTCACGTACTCGCTCTCC 266941 36 100.0 37 .................................... GCCAGTCGTTTGTGCATCAGTCGTTAGTGAGCCCCAA 266868 36 100.0 35 .................................... AGCGTGTCCGTCCAATCTCCGTTGCTCGCAAACGG 266797 36 100.0 36 .................................... TTCAGATGGCTAAACCCACCGGAACCTACGAACGCT 266725 36 100.0 36 .................................... ATGTCGTAGACGACATCTGTAACGCATCCCCCGCCC 266653 36 100.0 36 .................................... TGCGATTCGCGAGGCAGGCCGCTTAGCAACCACTTC 266581 36 100.0 38 .................................... TTTGTCATGTCGCGTGTTCGGCGTTGGCCTAGGATCTC 266507 36 100.0 38 .................................... TTCGCAAACGGCACCGCCGGGGCAACGACAGTTGGCAA 266433 36 100.0 35 .................................... ACACCGAAGGCGGACGCGTTCACCGCAAGACGCAA 266362 36 100.0 37 .................................... AAGATGACGTCTCGGACCTGGACGAGGCAATAGATGG 266289 36 100.0 36 .................................... ATGACACTTCCACTTCTTTACAATTTTTGCATTAGG 266217 36 100.0 38 .................................... GACGGTTCTTGCTCAAAGACCGTTGATAGCGAGTGTCC 266143 36 100.0 35 .................................... ACCTGATCTGCGGCGATGGCGAAGACGGCGCGAAG 266072 36 94.4 38 ...............................A..A. GTCTGACTGGGGGTCAACAGGTCGCAGGTTCACCTCGG 265998 36 80.6 0 ..C....A.....A.C......C.A.....G..... | C [265989] ========== ====== ====== ====== ==================================== ====================================== ================== 21 36 98.8 36 CTTTCCGTGACCATCGAGTCACGGCCTCATTGAAGC # Left flank : GACTTAATGGAACCCTTTCGCCCGCTGATCGCCGAATCGGTTGTCCTGTCAGCGGTCAACAACCGGATGCTGACGCCAGAGCATTTTGTGCCAGGAGGCCGCGGAGTCTTCCTTTCCGACAGTGGCCGCAAGGCCTTTTTTCATGCGTATGAATTGCGGATGGACCAATTGGTCACCCATCCGTTGTTCGAATACCGCGTCAGCTACCGGCGGCTGCTGGAGATCCAAACCCGCCTGATGGCGCAGATGGTCCGCGGCGAGATCGAGACGTTTCCAGTCTTTGTAACACGTTAGTTGGTTTCTGTTTTTTGACCATCGAGAACTGCGAGCGGCCAGGTGCCGACAAAAACCGCCCCCCCGCTCGCAGCTAAAAAACCAAGCAAAAACCAACACAAGGAACCAAAGCGATAGCTCCTCACCGCCCTCCAACTCCAATCTCCGACAACCACTCGCAGACTGTCGCAACAGCCGCAGAAATTGTACACTCAGCTCCGCGGCCC # Right flank : TGGGGGGATATTAATGTCCTGCGACGGCGTTGCGGCTCCCAGCGGTCCCGCAGTGAGCACAGGCGCGGGGGCGGCGTTGGATATACCAGCACGAAGCGCTAGCGAGTGATCGAGAGCTAAGCGTCGGTGCGGTGGGGTTCACTCGCTTGCGCTTCGTGCTGGTATGGGAGTGTGAGTCGCCCTGCAGAAGGTCAGCAACCGGGGCAAACATACTAGCACGAAGCGCTAGCGAGTGATCGAACGCCAAGCGTCGGTGCGGTGGGGTTCACTCGCTTGCGCTTCGTGCTGGTATGGGATCGTGTTGTTACCGAGTTAGGCCGAGCAGCTTTAGCATGTCGGGGGTCGGTTGGTCGAAGGTTTTGATTTTGGTCGGGTTGTCGGGACGGTTCTTGTCGCGAAGGATCACGATCACTTCTTGATTGGAGGCGATCTGTGCTGCGGGAGCGGATGCGGCCGGCGATGTGACGGCGGCTAGACGCGTCGGCGGTGCGGGAACGTTC # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCCGTGACCATCGAGTCACGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.50,-8.30] Score: 0/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 7318835-7319000 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP036318.1 Rosistilla oblonga strain Mal33 chromosome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ============================================ ================== 7318835 26 100.0 44 .......................... GCGAACGGGCGGTCCGGTTCCGTAGTCGCGAAGCGACGACACGG 7318905 26 100.0 44 .......................... GCAAAGATTGAGGACACTCGAGAAGTCGCAAGGCGACGGCATGT 7318975 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ============================================ ================== 3 26 100.0 44 GATAGCCTGGGACGCAAGTCCCAGGT # Left flank : GCAACGCGATCGGTTGGGACGCAGCGCTTGGCTGCTACATGTCGGTGGCGGGGCCCGCGGGCTTGGAGCAGGTGAAGCAGTTATTGAGCAGCAGCGATGACGAGCAAACGCTTTTCATGGCGCTGAACGCGATCCGTTTTCACGCCGTCGAGACGAAGCGGTTTGACCAAACGGAACTCGCCACGGCGCTGCATCCTTTGCTGCGGAACGTTCGCTTGGCAGCTTACGTAATCCCCGACCTGGCTCGCATGGAAGACTGGACCGTCGGCCCGCGACTGTTGGAACTGTACGCGTCGCCCGATGCCGCTCCGATTCGAATCCACATCGTCAACTATTTCCGCACCTCCCCACGTCCCGACGCCGCCGAATCCCTAGCGACCTGCCGCGAGCTAGATCCCACCGCCGTTCGCCGCGCCGAACTCTTGTTCGGCAACCTGCGACCACGCAAAGACCAGTAGTCCGCCAAGCGACGCGACCGTAGTCGCGAAGCGACGACACGG # Right flank : TAAATAAAAACGGACCGGTTTCGAAGTCGCGTAGCGACGGCATGTGTTCCGCGCATCATGTCGTCGCGTCACGACTGGGGGAAACAATATGGCGTGGCGGTCCGCGGGTTCCTGGGACTTGCGTCCCAGGCTGTCACATGGCGTCGCTTCGCGACTGGGGAATGATATGGCGCGGTGGGCTCACGATCCTGGGACTTGCGTCCCAGGCTGTCGCATGGCGTCGCTTCGCGACTGGGGAATGATATGGCGCGGTGGGCTCACGATCCTGGGACTTGCGTCCCAGGTCATCGCATGCCGTCGCTTCGCGACTGGGGAATGATATGGCGCGGTGGGCTCACGTTCCTGGGACTTGTGTCCCAGGCTGTCGCATGCCGTCGCTTCGCGACTGAAACAATCACGCCAGGAACTCCGATTCGAAAACGTATTTCGGGTCGTATTGGATTTTGTGTTTATCCAAGAAGCCGATGTATTCCCTTTCAAACGTTTGTTGGGCGTGATGT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAGCCTGGGACGCAAGTCCCAGGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.60,-4.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.74,0.27 Confidence: MEDIUM] # Array family : NA //