Array 1 171398-170148 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDFC01000002.1 Klebsiella sp. KG9 NODE_2_length_499020_cov_58.283766, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 171397 29 100.0 32 ............................. CTGTTTAGTCGAACATCCCCCGGCGTACTTTG 171336 29 100.0 32 ............................. CCGTCCGACGATCTGGACACGGCCGCAATCTT 171275 29 100.0 32 ............................. CTGGCGAGTGGACTGATAATGGTGCTTCTATC 171214 29 100.0 32 ............................. CGATTGATAAATCCGCTCACACGTCACCCCGG 171153 29 100.0 32 ............................. TCGACGATGACAACGATGATGATGAAGATGAG 171092 29 100.0 32 ............................. CTCGTTCCCGTATTCGCGACAGAGGGCATTCG 171031 29 100.0 32 ............................. CTTATCGGTAGCGCACAAGCGGCGCTCTACAC 170970 29 100.0 32 ............................. TCCTCGATACAGCCTGGCCGCGATACCGTTAT 170909 29 100.0 32 ............................. GGGACCGGATAAATTCGAACATCACTTTCAGG 170848 29 100.0 32 ............................. CGTTTTGCCGTGACACCCTCATCCCAGTAATC 170787 29 100.0 32 ............................. AACCTTAGCCATGATATAAAATTGGTCTTCAT 170726 29 100.0 32 ............................. GTGTCTCCATCCATAAGAACGAAGTGAGTGAC 170665 29 100.0 32 ............................. CAACCTGGACGCTGCAATGGATATTCACGCTG 170604 29 100.0 32 ............................. GGAGCATTTAAAAATCTGCTGCTGCACGCGCC 170543 29 100.0 33 ............................. AAATCCGCAGCCGCCGCGAAGTCGTTCGCGTGT 170481 29 100.0 32 ............................. GTCCATGATGTTGTGTTTTTTCACCCAGCTGA 170420 29 100.0 32 ............................. GTGATATCCCTTACCCAGGCTTCAAAAAGTTG 170359 29 100.0 32 ............................. TGCGCGCGCTTCTTCTTCATCCGCTCCTTTGG 170298 29 100.0 32 ............................. GACTTATAGCCATCGCCCATGTCGAATACCCA 170237 29 100.0 32 ............................. GGGCGGCCGGTAGTCGTCCTTTCCAATAATGA 170176 29 93.1 0 .............T..............A | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGCGATATCGCGGTGTTCTCAAAGGGCAATATTCAGCGCCTGGTCGGCGCGCTGGCGGAGAGCCATCGCCTCACGCTGCATACGCGTTATCAGGTTGACTATACTGAAACGCTTTACGGCCTGGTGCGTTCCCGGCTGGCGGTGGCGATTCTGCCTGAGCTTTATACCACTCACCTTCAGGATCCGGCGTTAAAGGTGGCGCAACTTCAGCAGCCGGCGCTGACGCGAACCGTGGCGCTGATGCGCGGGCCGCAGCCTCTGCCGCCGCTGATAGAAGCGTGTTTTACATTATTACTGAGTTCGCTGCGGGAAGTGAATCTGTAGAGGCCGTTGCTCTCTCAGCTTGTTGTGGTGAAATGCGAGAGAGGTAACGGAATAGTTTCTTGTGCCTTTTAAAATCAAATAGTTATGGCTCTTTAAAAAAATCAATTTGTTGCAAAAATGTTGGTAGATTGTTCTTGGCGGATAAATTTATTATAAAACAATAAGATATGGTTAGT # Right flank : CAGTCAATGTTTCCCGAACATGGTTCTAAAGAGTGTTCCCCCGCAGCTGGCCGCCGCGGGGGCTGATTTACGGCGTCACGATATTGAACCAGAACTCAAATTTATCCATATAGCCCAGCATCTCATCCAGCTTCGCGCCATCGCCGGTCACTTTCACTTCACCCTTATCTTGCGCCTGTTTTAGCGTTTCCTCTTTCAGGATGATTTTGTTCAGCGTGGCGCGATCCAACGCAATGGTAGCATCCGCGTCCTTGGCTTCGGCATCGGCGGTGTGGTTGAGCACGCCGTTTTCCAGCTCCAGCTTATATTTACCGCCATCGTTACCCAGGTCGATATTGAACACCGCTTTGGCGGTTCCGGCTTTCTCACCATTAATATGCACCGCAAGGTAATCGAAGAACATTTCCGGGGTCATCGCCCGTACGGTATCCGGGCTGGCGGTGTTCGGCGTCGGGCCTTTCACTACGCCGTTGCGTAGCTCCTGAGCGCCGGTCAGGTAG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 546-29 **** Predicted by CRISPRDetect 2.4 *** >NZ_PDFC01000043.1 Klebsiella sp. KG9 NODE_43_length_596_cov_1.589595, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 545 29 100.0 32 ............................. AAATCCGGACAACGCTTGCCACCTACGTATTA 484 29 100.0 32 ............................. CATTGAGACACACATTGCGACGACTAAACTCT 423 29 100.0 32 ............................. TTTAATGAAAGGTGCTAGTTTTGTGACACTTT 362 29 100.0 32 ............................. GATTTTCCAGATTCGGCTACTATTTTGGCAGA 301 29 96.6 32 ............................C TTAGGCTATTCCGCACACAATATGTGGCGTGG 240 29 96.6 32 ...............A............. GACTGCAATGCAAGCAAGAGCGGACATAGCAA 179 29 96.6 32 ............................C GTCATAAATTAGCTTTCTGCCCTTTTGCGTCC 118 29 100.0 32 ............................. GCTGCTACGAGCGCTTTTGGTCACATTAAAGA 57 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 98.9 32 GTTTTCTCCACGTATGTGGAGGTGATCCT # Left flank : CGTATGTGGAGGTGATCCTAAGAGAAAACGGTGGTTTCCTCTTATTTTTA # Right flank : TCATTGATGCACCGGTACTTAACTCAAAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : GTTTTCTCCACGTATGTGGAGGTGATCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //