Array 1 961-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZH01000018.1 Streptococcus mutans B115SM-A contig_244, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 960 36 100.0 30 .................................... ATTTCGTCGTCGCTGAAATCAACTAATGTA 894 36 100.0 30 .................................... AAGAAACTTGTTTTCTTTGGCGTTTAGCCA 828 36 100.0 30 .................................... CAGCCATTAGCCATCTAAGCCCCTCCTACA 762 36 100.0 30 .................................... ATCAAATTTCAGACGATAGGTTCAAGCTTG 696 36 100.0 30 .................................... TATCTTTCTTTTTTGTGTTTAATTAAATTA 630 36 100.0 30 .................................... TTCATCTCTTGTACGCTTCTAACAGTAGTG 564 36 100.0 30 .................................... CGGAAGATTGGCAGAATGTCGTTTGTGTTA 498 36 100.0 30 .................................... AACAAATTAGTGATTTAATTGAGTCTGCCG 432 36 100.0 30 .................................... CTGCCTTTTGTCAGCTCTTTAATCATACTG 366 36 100.0 30 .................................... TTTATTGGATTTGATATAATTAAAGATGAT 300 36 100.0 30 .................................... CAAAAGGCAGTGATAAGACAGCAGCGTTTG 234 36 100.0 30 .................................... ATAGCTGTAGAAATTTTGGTCTGTGTCATC 168 36 100.0 30 .................................... GCTGATGAAACAGAGCGACGCAACTTTTTT 102 36 100.0 30 .................................... TACGTAAAGTCTGCGTCCGCTTCGATTGCG 36 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : AGGAAGAGGAAGGATATTGGGTTGAATTTCCTGAATTTGGCGGTGGTACGCAAGGGGAAGATTTGGAAGAAGCCATGAAGAACGCTCGTCAGATGTTAGAAAGTGTATTGGCCTCCTATCTAGATGAGGGAATGAAACTGCCTAATCCAAGTGAGATAAGGAAACTATCTGTTGAAGATGGCTTTGCAACTATGATTCAAGCAGATCCTAATCCTTATCTCAAAAATAACAAAGCTATTCGAAAGAATGTTACCGTACCTGAGTGGCTAGTACAATTAGCAGATCGTGATCAAGTGAATTATTCTGAAGTATTAACAAAGGCTTTGGAAAAGAAACTACAATTATAAAACAATAAAATCGCTAGAAAGATTGATTTCTAGCGATTTTTGAGGTATAATATAAGCAATCAAAACCTTTTAAAAAGGAATTATTTGAAGCTGAATTCTAGCTGAGATGAATGGCGCGATTACGAAATGTCGTGACGAAAATTGGTCCACGAG # Right flank : C # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], // Array 1 4-304 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZH01000015.1 Streptococcus mutans B115SM-A contig_238, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 4 37 100.0 29 ..................................... GACAGTAATTGGCGGAAACAACAATCAAG 70 37 100.0 29 ..................................... GATACGTATATGCTATTTTTATCTAGAAA 136 37 100.0 29 ..................................... ACGTTCTATGTTTTTATGGTTTATTCTGA 202 37 97.3 29 A.................................... AATAGAATCAAATTCTCCTAAGTCAGTTA 268 36 73.0 0 A..........CA.......A.TG..-T.A.T..... | A [284] ========== ====== ====== ====== ===================================== ============================= ================== 5 37 94.1 29 GGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : TGCG # Right flank : CGCATTATGCGAAAGATTTTTAAATAAGCAAAAGACACTTGAAGCAATAATTCAAGTGTCTTTTATGGGACTTTCTTTAATTTTTAGGTAATGACCGTTCCGATGACTTCAATTGTATCATCTTCTTTTAAAATGATGTCATCATAATCTGGATTTAATGAGATGAGTCGAATTTCTTTGTTTTTTCGGTAGAGTTTTTTGACATATGCCTCATTATTTACAATAATAACGATAATTTGTCCGTGATGGATAGCTTTAGTCTTTTTAACAAAAATAACGTCACCGTTGTAAAATAAAGGTTCCATACTATTACCATTGACAGTAAGAGCGATATCATGTTCTGGAATTGGTATTGGGTATTTAATGGTTTCTTGTTTTTCATGTCCAACCCAGATACCAGTACCAGCTGAAACTTCACCATAAATCTGAATGTTTTCGTATTGACGTCCAAAGGTTTGATACAAATCCTTAGCTTTTATCACATTATCCCAATGAATAAT # Questionable array : NO Score: 5.76 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:59.46%AT] # Reference repeat match prediction: F [matched GGTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [1.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 963-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_ALZH01000035.1 Streptococcus mutans B115SM-A contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 962 36 100.0 30 .................................... AAGAAACTTGTTTTCTTTGGCGTTTAGCCA 896 36 100.0 30 .................................... CAGCCATTAGCCATCTAAGCCCCTCCTACA 830 36 100.0 30 .................................... ATCAAATTTCAGACGATAGGTTCAAGCTTG 764 36 100.0 30 .................................... TATCTTTCTTTTTTGTGTTTAATTAAATTA 698 36 100.0 30 .................................... TTCATCTCTTGTACGCTTCTAACAGTAGTG 632 36 100.0 30 .................................... CGGAAGATTGGCAGAATGTCGTTTGTGTTA 566 36 100.0 30 .................................... AACAAATTAGTGATTTAATTGAGTCTGCCG 500 36 100.0 30 .................................... CTGCCTTTTGTCAGCTCTTTAATCATACTG 434 36 100.0 30 .................................... TTTATTGGATTTGATATAATTAAAGATGAT 368 36 100.0 30 .................................... CAAAAGGCAGTGATAAGACAGCAGCGTTTG 302 36 100.0 30 .................................... ATAGCTGTAGAAATTTTGGTCTGTGTCATC 236 36 100.0 30 .................................... GCTGATGAAACAGAGCGACGCAACTTTTTT 170 36 100.0 30 .................................... TACGTAAAGTCTGCGTCCGCTTCGATTGCG 104 36 100.0 30 .................................... AGAGTGAAAGATTAGAATGCCATTCAAACG 38 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 15 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : T # Right flank : CAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [1.7-3.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //