Array 1 775952-775067 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUEM01000006.1 Enterocloster bolteae strain ATCC BAA-613 Clostridium_bolteae.1cell.HGAP3_contig6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 775951 33 100.0 35 ................................. ACTATCTGTCCAATCAAGCAGACACCGGTCATCCA 775883 33 100.0 33 ................................. CCCTCATAGCTCCCATTGAATAAGGGTCACATT 775817 33 100.0 34 ................................. CTTGAAATGCTCCAGCGCACGTCCTGCCAGGTCA 775750 33 100.0 36 ................................. CTTTTTAGGGAAAGTGAGAGGCAAAGGCGCTATATA 775681 33 100.0 35 ................................. AACAAAACTTGCACTGCAGGCAATGGTGGACCGTG 775613 33 100.0 34 ................................. AGCGCAGAGGCCGGAAAATCGTGAATGTGGAGTC 775546 33 100.0 35 ................................. TTCCAATATCTCATTACTTGCTGCCTCGGCCCCCG 775478 33 100.0 34 ................................. CCTATATTATCTGATGTATCAGGGGATAACAGTA 775411 33 100.0 33 ................................. TTACCGGATGTCTGGATTCTGGTAAACCGGTAT 775345 33 100.0 34 ................................. GTCAATGCCGGAACCAATAGGAACCCCGTCACCT 775278 33 100.0 35 ................................. CGTCACATCGTACGTCTGGCAGAATGCGCCTACCA 775210 33 100.0 36 ................................. CCGTGGAGGGCGGCCGTATAAGTCTGAGCCCAGTCA 775141 33 84.8 9 .........................C..TTCC. TTCCGGTCA Deletion [775100] 775099 32 75.8 0 ............A.A.-..A..CAA.C...... | G [775070] ========== ====== ====== ====== ================================= ==================================== ================== 14 33 97.2 33 GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Left flank : TGCTGATACTGATTACATATGATGTGAATACGGAAACCACTGCAGGCAGGACCAGGCTGAGAAAGGTTGCAAAGCAATGCGTTAATTACGGCACCCGCGTCCAGAATTCTGTATTTGAATGTATTTTGGATAATACCCAGATGATAAAGCTAAAAGCCATACTGACAGATATCATTGATGAGCAGACTGACAGCCTTAGATTTTACAACCTGGGAAATAAACACACTACAAAGGTGGACCATGTTGGGGTGAGTAAAGGGATTAAAGTGGAAGAGCCGCTGATATTCTGACCTGGCTGCGGGCGGTAAGGAGGTTTCAAATAGTTTGGTGCGAACCAGAAGCAAACATGAATTTACGGGGGGATTCGCACCGGAAAAACTGCACAGTGAGAACGGTTTTGGATGTGTGCAGGGCAGGTTGGCGGTGATTTGAGGGAGTATGATGTGATTTGATTGTGGAAATGTGATGAAGAATTGTTGGTTTTTTTGTGTAGTATTGCT # Right flank : CCGCCAAATTCAGGATTACGTTTAGTCAAAACATCATTCCCCTTTTTCTAAGAAAACAGTATAGTTTGAATCATAAACATTAGCTATAACTAACAACACGCAACAAGAAAGGTGGGCGAACACCCACCTTTGCCATAAAACTGTTATAGGGTATAAAGAACGCGGGCCTCCCTCACCCTTTCCATGCCCGAATCTCTCTAAGCCCCGGCACCAGCACTTTGGCGCTGGTTTCCAGAATAATCCGTCCTTTTTCAGCCGTGGCGCCTGACGGGTCTCCGCCGATTCCTATGGGTTTGCCGTCTGCTGTTTTCCAGTCCTCGGACACCCAGCCAATGGATACGTTTCCATAAGGCCTCAGTGCCTGATTGTCTTTAAATGCAATTGGAATTCCTGCCTCTGAGGTATCTAACTTTACCAGGGACGGGTCCACGGCCATGACCATGGAGGTTTCCATCTCGCCTCCATGGAAGTCCCAGATATTTCCCTCTGAAATGGTGGCC # Questionable array : NO Score: 5.96 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCTCCGTCCTCGCGGGCGGAGTGGGTTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.70,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [14-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 3162217-3163656 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUEM01000006.1 Enterocloster bolteae strain ATCC BAA-613 Clostridium_bolteae.1cell.HGAP3_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 3162217 33 100.0 35 ................................. ATAAAGCTGTGCCTGGGCGTTCTTTTCGGCCTCTG 3162285 33 100.0 33 ................................. CTATATCCCTGCTTTATTTTGGGCGGCTCCGTC 3162351 33 100.0 33 ................................. TCCCCGAACCGGATTACCTGGCTGTTAATCCCG 3162417 33 100.0 35 ................................. ACTAAAGGAAATATGTTTAAGGTTGGGTACCATAT 3162485 33 100.0 33 ................................. AAATACTCCACTGTGCGGTCCACATCCACGGAA 3162551 33 100.0 32 ................................. TCAGTCCGGCACCCGGTTCATATGGCTGCAAA 3162616 33 100.0 34 ................................. TCCGTTATTAGGTTATTTGTAGGTGTGTAACCGT 3162683 33 100.0 33 ................................. ATTTGTAAGATAATCAACCAAATTTTGCGCAGA 3162749 33 100.0 35 ................................. ACCGATAGCAGAGCCAGCCACATCAATATGTATAC 3162817 33 100.0 33 ................................. AACGGTCTGTGTGCCAGCAGTTACAAAATCTGC 3162883 33 100.0 33 ................................. ATCAGATGCTGCTTATCATTTTAAATCCATCAA 3162949 33 100.0 36 ................................. GTCAATGTAATTTATCAATCCTGCTTCCCGCATATC 3163018 33 100.0 33 ................................. CATGTTGATTATCAGATTATGAATCAACTGTAT 3163084 33 100.0 35 ................................. GCCTATAGCAGAGCCAGCCACGTCCACATGAATAC 3163152 33 100.0 33 ................................. ACGAAAACCACAATCATCACAACCGTGAATATA 3163218 33 100.0 33 ................................. GTAAGGCCCGTGCTCTATGAGAAAATCAAAGAG 3163284 33 100.0 35 ................................. ACCTTCCACCTGCGCATCCTTAAAAGCTGAATGCA 3163352 33 100.0 36 ................................. GTAATGTCCTCCCCTAAAAGGGGTAACTGAATCAGC 3163421 33 100.0 36 ................................. AACATAAGCATTTACGGCTGCGAGTATGTCTGCCCC 3163490 33 100.0 34 ................................. CTATATGTCACGTTATCTCACCTCCGCTCATAGT 3163557 33 100.0 34 ................................. GATATATAGTATAACAGACTAAAATGTATAAATC 3163624 33 81.8 0 ......................CA..CCA...G | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 99.2 34 GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Left flank : AAGTTCTGGAACTACCTGAAAAATGTGGATTTCTGGCAGTGGCCGGAACAGCGGTGGCCCTGAAGGCGGGAAAGCTGGCTGCTGTAATGGAACGTCAGGGCAGAGTACTGCGTATTTGCGATGCCGAAGATATGAAGGAAGTGATGGCGGAATTTGTCCGTGCGTTCAAGCAGGGAGCCATATATCCGGAACAAAAGAGGCTTGTATTGAAAGAGTATCCGGCGGAGGCGGCAGAGGCTTTGCAGCATGCAGGATATATGCGGGAAATGAAGGATTATGTAATATATAAGTAGAGTTGGTTTCTGTGAGTTGGGAGCCCTTCAAACCAGGTGCGAATGCCAAGCTGACATGAAATGCCAGGGAGATTCGCACCTGAAAAACAGAGGAAAAGGCCGTGAAAGCGGGCTGGGTGAATGGACTGAATTGGTTGAACTGGGGAGAGAAGAGCATAATGCATAAAATGTTAGGGGGGATGTGGAGTAGGTTTGGATAATTTTGCT # Right flank : GATACCTGTAAGCCCCTAAATTAATGCAAAAGGAAAATTGCTCCCCGCGTACCTAATGCATTGAAAGCAGCCATAATTATATATTGAGAATTCGCAAAACATCAGTTAAAAGAACATATTAACAGTATCCCGATCAACAGGGAATCCGTTAAGCGCATACCCCCCTCCGTAAAAAACATCCGCCCCAAAAAACACCAACATAAACAAAGGAGTAACACATATATGATTGAAATAATCTATAGAGACAAACGCTTTCTTGTTAAGGGCAGCTTTTCCATAGGAATAGCAGGAAACTATGTAAATGAGGATTTTGGGGATGAGAATATCATGATTAACGATACGTTAGAGGAAATCATGAAAGAATTGCAGGATGAGGACTCCTTTTGGTACAAGCCGCTGTTTCCCTATCTTAAATCTGAGACAGCAGACAGTGGCGGAATAGCCAGAGGTCTTACTGCGTACTACAATCAAAAGGAAAAGGAAATCAGGGAGAATGAAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGAGGCTCGCGAGAGCCTTGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.90,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 5543573-5543784 **** Predicted by CRISPRDetect 2.4 *** >NZ_PUEM01000006.1 Enterocloster bolteae strain ATCC BAA-613 Clostridium_bolteae.1cell.HGAP3_contig6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ============================ ================== 5543573 32 100.0 26 ................................ GGTCTAAGTAATACCACTGTCCGCCC 5543631 32 96.9 28 ...............................C CGTCCAGATAATACCATCTGCCATTAAT CT [5543636] 5543693 32 84.4 28 G....................CT.A......C CGTTCATATAATACCATTTGCCGTTGAT 5543753 32 81.2 0 ................AT....ATA...T... | ========== ====== ====== ====== ================================ ============================ ================== 4 32 90.6 28 AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Left flank : CGGACAAGCGCTTTCCCAAGGCCAGACGCGTCCCGCGCACCTTGATGATAACGCTTCCGCTGCCTTTCTTATTCAATATATTTACAGGCGTCCCCTCATTGACCCCCAGGGCCTCAAGACGTCTGGTAATGCTCTCATCCACCTGCACGCCCGATACAACATACCGGCCGCCGATCTCACACTCATTCAGCTTTTTCTGCATTGATGCCTGTCTCCTTTTGTAGTTACATTTAAACCATATTCATTGTATGCTTAATGCGAAAAAATGTCAATAAAAAGAGTTTGTTATGACAAACTCAATTCAAAAAAAGATACAGCGAATCTCTCCGCTGCATCTTTTCCTGCTTTTTCTCTATATTTCTTTATGTTTCCGTTCTGTATATTCGTATTAAGATTTACTGCACCCAGGCTCCTGAACCATCCACATATTTTCCGTCCGGCGTCCATGTATTATAATACATGGCTCCATTGGTGCCCAGATAGTAATACTTGCCATTAAT # Right flank : GAAGGGTTCAGATAGTACCAGGTCCCATCCAGCTTCTGCCAGCCGGTAACAATATACCCCTTGTTATTGAAATAATACCATGCGCCGTTAATCTGTTTCCAACAGGAGGCCGGATATCCGCCGGTATCATACGCATACCATACACCAGTACCATCCTGCTCCCAATGTCCGCTTCCGCCATAGCGGCCAAGCTCATCCTCATCAATATACAGGGAGTTGGAATCCTCGGACCATTCACCTGTCTTATTATTGTAACGGGAAATAGCCCTTACACGGAAGGTATAGTCTCCCTCCCGGTTAAAATAACCTGCAAAATTATATGAGGTTCCTGTAGTGCTGACCGTAGTGACTGTCTTGTCGTCGCGGAGCAGCTTTACATCATAGCTCTTAGCGCCTTCAATCTCCTCCCACTCAGCCGTGGTATCATTCCATTCCAGCTCCGACGCACCCTGAAGCTTGCCGCCGATACGTTTTAACTCAGCATACACTTCAATGTACTG # Questionable array : NO Score: 3.28 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:-0.09, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGCCTGCCAGCCGGTCTGCATGGCGCCGCTGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTGCCAGCCGGTGAGCATGGCGCCGGAGG with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.50,-3.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //