Array 1 219897-221205 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYF01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2828 NODE_3_length_399791_cov_1.77062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 219897 29 100.0 32 ............................. CAACAGCGTCCCGTATTCTGTATCGTTGACGG 219958 29 100.0 32 ............................. CGCATTACTACCGGGATTAGTACCTATCAAAA 220019 29 100.0 32 ............................. GCAGACGCTGCCGTCCCCCCGCTCGACGCTGA 220080 29 100.0 32 ............................. CAGCGGGAAAACGTCCAAGTGCCCATATCCCC 220141 29 100.0 32 ............................. CCTTCAGAACATGCGCGGTATTATTTTTGACC 220202 29 100.0 32 ............................. CCGTGGAAAGAACCAGAACGCTGGATATTGGT 220263 29 100.0 32 ............................. ACCACATCAATGACCACATCACGCAGATATTA 220324 29 100.0 32 ............................. CGCCGTGTTTACTTCAATAGCGACGTTGTGAG 220385 29 100.0 32 ............................. AGGTTGACCATCGTCAGCTTCATAAAGATTTA 220446 29 100.0 32 ............................. GGCGTTATTGAGTGGGAAAAAATCGTAAGCGC 220507 29 100.0 32 ............................. ACGCTCTATAGCCATTAGGTGCGCCACCACTT 220568 29 100.0 32 ............................. CAGCTCTCTAACGACTTCCCCGGAGTACGTAA 220629 29 100.0 32 ............................. CTTGTCGGCGTTGCTCACGTGACTATTTCGCA 220690 29 100.0 32 ............................. CGATAATTTATAAATTTTCGTCCACTCATCAA 220751 29 100.0 32 ............................. ACCGTTATCTGCTGGTTGATACTTCCCCGAGC 220812 29 100.0 32 ............................. CCGCAGAACGCCGCATCGCCGAACTGGACAAA 220873 29 100.0 32 ............................. TGCCGGTTTATCTGCTCCGGACCAATCGACTA 220934 29 96.6 32 ...................A......... CGCCGCCAGCTGGAAAAATGCCGCCTGTTAAT 220995 29 100.0 32 ............................. CTCCAGCCGACGCATTCGCTTGATCGCTTTAT 221056 29 100.0 32 ............................. GGGCTGGACCTCGATTTATTTAATACGTTTAT 221117 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 221178 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCGCGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 237465-238288 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXYF01000003.1 Salmonella enterica subsp. enterica serovar Saintpaul strain BCW_2828 NODE_3_length_399791_cov_1.77062, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 237465 29 100.0 33 ............................. TTGAGCACGACGAAATTTGGGTTTGATGCAGCC 237527 29 100.0 32 ............................. GTTATTCAGTTTATTAAATTTTTCCGCCAAGT 237588 29 100.0 32 ............................. CAACTGTATTTTGCGTTATTACGCTGAACCAG 237649 29 100.0 32 ............................. CCGAGGTCGGAGCGGATTGACTTAAACGGCAA 237710 29 100.0 32 ............................. TGCAACAGCAACAGGAGAGAATGCGGCAGCGT 237771 29 100.0 32 ............................. CGTCAGTTGCTGGAACTGGGGCACGATCTGGT 237832 29 100.0 32 ............................. GAGCGGCTAAACGATGAATTAACCAGGGAGCG 237893 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 237954 29 100.0 32 ............................. GAGACGCCAGATGAATTCTGCGGGACAAGAGA 238015 29 100.0 32 ............................. AACGCAGGAGAACCAGCCGCCGGTCCTCCTGC 238076 29 100.0 32 ............................. GTCTGACCAGTGGCGTGGGGGGATTGCAATTT 238137 29 100.0 32 ............................. CGTGGCTGGAGCAATGAACAGATTAAAGGGGT 238198 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 238259 29 96.6 0 ............T................ | A [238286] ========== ====== ====== ====== ============================= ================================= ================== 14 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCACTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //