Array 1 17619-14479 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUA01000015.1 Bifidobacterium pseudolongum subsp. globosum strain 22511 Contig_15, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17618 29 100.0 32 ............................. GTGGTAGGGCGAGCGAGCGCTCATCGCCCCAC 17557 29 100.0 32 ............................. GCAGCCCACTGTTCGCGGCCTGTCTCGGTCTG 17496 29 100.0 32 ............................. TCACATTCACGCCACCGAACGACGGCAGTGTC 17435 29 100.0 32 ............................. ACGACGGCGCGTGTGCACAGTGTGGCATGGTC 17374 29 100.0 32 ............................. TCGTGGTGCGGCATAGGTGGTCTATGCTCGCT 17313 29 100.0 32 ............................. CTGCATGACCTCATGACGCGCGGCGCGGCATG 17252 29 100.0 32 ............................. ACCTTGTGCAATCCGGCAGCGGCGCCGACGAC 17191 29 96.6 32 ............................A AAATGTCCCGTGTGGTGAGCACGGCCACCGCG 17130 29 100.0 32 ............................. TCGAGAAATTCCGCACCGTCGTCACCGACAAC 17069 29 100.0 32 ............................. CCGCTCGTCCTGATGACGCCGGGCTGTTCCCA 17008 29 100.0 32 ............................. GCACTCGCCAACGTGGGGGACGTCGCGGCATA 16947 29 100.0 32 ............................. AACACACATTGCAACAAAGCCCCAATGGTACC 16886 29 100.0 32 ............................. AGGCCCATGACCTTGCGTCGCAGCTGGATCAG 16825 29 100.0 32 ............................. AAGACCGACTTCTACGCGGTCGACGCGGATGC 16764 29 100.0 32 ............................. AGGATTCGCATTGCCCGGTGGCCTTGTAGATC 16703 29 100.0 32 ............................. CCGTCCAACAGCACCGACGACCCCGTGAACTT 16642 29 100.0 32 ............................. ACTGCGCTGCGCCCGCGCGGCAACAGGCGGTT 16581 29 100.0 32 ............................. GCGCTGCGTGAACCGGAAAACCCGCTCGTATG 16520 29 100.0 32 ............................. GTGAGCACGCTCGGCTCTGGTTGTGTGCCGAT 16459 29 100.0 32 ............................. ATGCGTTCGAGTTGCGCGTGCACGCTGGTGCC 16398 29 100.0 32 ............................. ATTTCGATGCTGGCGCCGAAGATGGTGCAGCC 16337 29 100.0 32 ............................. GCGACATCAACGGGCTGCTCACCGAGGCGCTG 16276 29 100.0 32 ............................. CAGTGGAGCATCTGCCAATGGTGCGCCCGCGA 16215 29 100.0 32 ............................. GATTCGCGCGACGCGTGGACCGGACCCGAACA 16154 29 100.0 32 ............................. TTCACGGGGTCGATGGTGCGGTTGCCGGCCGT 16093 29 100.0 32 ............................. ATTGGCCTCACGCTCCAACAGATCATTAGCGA 16032 29 100.0 32 ............................. AATATTACTCTAGCTAACACTATTACAGCTAA 15971 29 100.0 32 ............................. GCGGCACGTACCCATGTGCGCCCGTAGTAGTA 15910 29 100.0 32 ............................. TACACCGCAGGCAGAAACGGCCATAAAATAGA 15849 29 100.0 32 ............................. TCGATATAAGTCGTCCCATAGCGCGCCGCGAT 15788 29 100.0 32 ............................. ATGAGCGCCCAAACACCCATCTACGGCATCAC 15727 29 100.0 32 ............................. TCGATCGGGTCGCCCGTCACCACTTTGTCTCC 15666 29 93.1 32 ..........................T.G CGCCAGACGATCGAGCGTTCGACCGTGGCCCC 15605 29 100.0 32 ............................. ACACACACCCACACCACACCACACACGACACG 15544 29 100.0 32 ............................. GCGCAGGTGATGCCGATGATATAGAGGTTCGT 15483 29 100.0 32 ............................. GCCATTTTCAGTGACATGCAATACAATGTGCA 15422 29 100.0 32 ............................. TGCTCTTCGAGCGCGTCCAATCGCGCGGCGAG 15361 29 100.0 32 ............................. GTGCGGCATGGGTATGTGTACTAGGACTTGTC 15300 29 100.0 32 ............................. TGTGTGAACGACACATGTTCGGGTGGCGCGTA 15239 29 100.0 32 ............................. ACCCCGGTGTCAGTGAATCCCTGCACGAATTC 15178 29 100.0 32 ............................. CTGCATGACCTTATGACGCGCGGTGCCGCATG 15117 29 100.0 32 ............................. AACACGTCTATGATGTATCTGGCGTCTAACGC 15056 29 100.0 32 ............................. TCTGGGTAGCGTGCTTGGAACCTGTCGCGGAC 14995 29 100.0 32 ............................. AATCGGGTTGCATGGATTCTCGATGTTCAGGC 14934 29 96.6 32 ............................T TGCGGGACTCCAGCCAATGAGCGGCTGCCCGA 14873 29 100.0 32 ............................. AGATACAGCGCGCCGAAACACGCAAGAAAAAG 14812 29 100.0 32 ............................. GGCATTAGATACTGAATAAATTGCGATGGGCG 14751 29 96.6 32 ....C........................ AGTATCGTCTGCGAACCGGCGCAATGGATGAG 14690 29 100.0 32 ............................. GCGAACGGTGGGTCTGGGGCGCCGGGTGGTCA 14629 29 100.0 32 ............................. ACGCGGATTCGTAACGCAATGCCTGACCGAGA 14568 29 100.0 32 ............................. TGCGTGACGGGTGGCGTGACGGCACGGTGCTC 14507 29 96.6 0 ............................G | ========== ====== ====== ====== ============================= ================================ ================== 52 29 99.6 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GACGCATGAGCGAAGCCCTCATGTTCGACCACACCAACAACCAATCAACCACAACCAGCATGCCCCAATGACCAAAACCGAAAAAACTACATGACCAAAACCAAAACACCGACTTGACAAAATACAGA # Right flank : CATGTACATTGATGAACGGAGGTAAATGGCATGCAGGCTGCAGGGGGAATGACGTTCGAGGATCTCGTCGATTGGTATGTCAGACAACTCATTCTCCATGGCGATGAGAAAAACGCCGAGGTCATCAGGAGTGCCCTTGCATGCGGCGAACCGGTAGTCGCTCTGAATATGGCAGTAATCCGGTCAAAACAGTTGAACATAATTCCTGAACGCCATATCATCGAGCGATCATGCGAATTATTGGATTCTGATGATGACGGCATGGAGATCTGCAAATACCTTTTTGCCCCGAACGGTGATTCCGTTGCACCGTGACATGGACCTGATCCAGCTCATCATGGTGGGGGATTTGTCCTTGCCGTTGAATGCGGCGGTTTGCCCCGCATGCGCGGAGATTCTGAGCTCGACGAGATTCGCGACTCCATCGACCTCGACGCGCTCATGGCGGCCCACGACATCTCCAACAACTGACCCATATTCTCCCATACACGAAAGGCCCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 4134-811 **** Predicted by CRISPRDetect 2.4 *** >NZ_RYUA01000016.1 Bifidobacterium pseudolongum subsp. globosum strain 22511 Contig_16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 4133 29 100.0 32 ............................. GCGTTCCGCGTCCTGCTGCGTCTCGCAGACGA 4072 29 100.0 32 ............................. AGGACGCTCACGGAATCGTTGGGGTCGCCCAG 4011 29 100.0 32 ............................. GGGTGGATCATCGTCGACGATACAGAGAAGCC 3950 29 100.0 32 ............................. GCATCTGCCGCTGGCTGACCGTGGACGAGAAA 3889 29 100.0 32 ............................. GATGTCACCACCAGTATACCGCGTGCGGTCTA 3828 29 100.0 32 ............................. GACGTGTGGGCTGATTGCGTCGTGGCCTGCGC 3767 29 100.0 32 ............................. CAATTCACGACGCCGTTCCACGCGGCTTTTAC 3706 29 100.0 32 ............................. GTAGTAGAAGTCTTCGCCGCAGCGCAGCACGA 3645 29 100.0 32 ............................. ATCTTCGACACAAGCAGGATGTCCCGCGTCTC 3584 29 100.0 32 ............................. ACGATGAAGTTCGCCGGCATCGACTCGTCAGC 3523 29 100.0 32 ............................. GTGCGGATTCGTCCAACGTTCGGGCATGGCCA 3462 29 100.0 32 ............................. TTCCCGCATTGCTGAAGAATCCGGCTATCCTG 3401 29 100.0 32 ............................. ACAGGGGAGTGGCATTATGAGCCATCGAATCG 3340 29 100.0 32 ............................. GTAGGTGGCGCCCCCCGTCCATGCGCCCATCG 3279 29 100.0 32 ............................. TCTCGCCTATTATCCATAATAATAACCGCCCA 3218 29 100.0 32 ............................. TCGCCCCCTATGTGGCACCTGCAATGGAGAAA 3157 29 100.0 32 ............................. GCGTTCACCCACTGTTCAGCGATGTTGGCCCC 3096 29 100.0 32 ............................. GTGCCGGGCCGTCTGCGCGGCCTCGGCCCCAT 3035 29 100.0 32 ............................. GCCCTCGCGGACTGCGGGGGCGTTTGTGTTTG 2974 29 100.0 32 ............................. AGTTCATATTCGGTATTGAAGGGCACGGCGAT 2913 29 100.0 32 ............................. ACGCAGGAGATCAGCTGGCCGATCTCGAACCT 2852 29 100.0 32 ............................. TGCGCGACAACACTCCGACGGCACCGACGTTG 2791 29 100.0 32 ............................. ATCGCGACACGGCTCACGCCCGTCGGCGTGAC 2730 29 100.0 32 ............................. CACTGCACGTTTTCCATTGGCGCTCGCTTGGT 2669 29 100.0 32 ............................. GCGGCCATCGGAGACCAGGAAGCGCAAGTGGA 2608 29 100.0 32 ............................. GACAGCGGGAACCTGCTGTTTGAAAGCAATTC 2547 29 100.0 32 ............................. CATTCCAGCAACGCGGCCGACGTCACATCGGC 2486 29 100.0 32 ............................. ACCTGTGTTATACGCGCTCGTATTGCCGCTAC 2425 29 100.0 32 ............................. ACGAGGCGCTCGCAGCCAGCGCGCACGCCGAC 2364 29 100.0 32 ............................. ACCGGCAACCTCGCCAAGGCAATCAGGAAGGC 2303 29 100.0 32 ............................. TCGATATAAGTCGTGCCGTAGCGCGCCGCGAT 2242 29 100.0 32 ............................. AACGACGAATACGGCATCACCCGTATTTGCAT 2181 29 100.0 32 ............................. TCATGCCCGTTTTTAATGGCCTCTTTTATACA 2120 29 100.0 32 ............................. ATCTACCTGCATCGAGAAGTACGCGGCTCGAC 2059 29 100.0 32 ............................. GTCACGCCCAATAACGGCTATTATTGCTGGGA 1998 29 100.0 32 ............................. GTGTCACCTGATTTAACCACATATTCACGATA 1937 29 100.0 32 ............................. ACCGCGAACGCGCAGCAGACCGCCATCGCGAG 1876 29 100.0 32 ............................. GCTCCAAAAATTGACCGAACCTAGATTTTGAA 1815 29 100.0 32 ............................. ACCCAGCCGGCTGTGCCGTACTGGGTGGGTAC 1754 29 100.0 32 ............................. CCGATGTGGTCGAGCTTGTGTTTGCCGTTCCA 1693 29 100.0 32 ............................. TACGCGGACGGTTGCGTCGTCATCGACAATCC 1632 29 100.0 32 ............................. ACCCAGTCGCCGGCCGGCAACGTCATTTTCGT 1571 29 100.0 32 ............................. GTGTTCAGACTCGCGACGGCTATCATCAAGGG 1510 29 100.0 32 ............................. CTGATCCGCAGGCAGGTGAAGTGGAACCTCGA 1449 29 100.0 32 ............................. GCGCTGCGGAAGTCCACGAGCTGCGGGCGGTA 1388 29 100.0 32 ............................. ACGGTGGAGAGCGTGAGCGGGTCAACGCCGGC 1327 29 100.0 32 ............................. GTGTACATCGATTGTGTCGTGGCGTGCGCGGC 1266 29 100.0 32 ............................. ACGGGAATTGTAGTCAATATCAGCGAAAAACA 1205 29 100.0 32 ............................. GACAAGAGCATCAGCATCGAATGCAACCCACG 1144 29 100.0 32 ............................. ATGTTTTGGCCAAAGTTGTTGCATGTGCAGCA 1083 29 100.0 32 ............................. TGCTCTACAGCAAATCCGACCTGCAGGAGATC 1022 29 100.0 32 ............................. GTACGCTGCGCCGTTGGCGCGCCGAGGATACC 961 29 100.0 32 ............................. GCCCGCGACGCAGCCGGCCTCGCTCGACCTGA 900 29 100.0 32 ............................. TGGAGGTCTTCGGCCTTCATGGCGGGCGTCAC 839 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 55 29 100.0 32 GTGTTCCCCGCAAGCGCGGGGATGATCCC # Left flank : GTGCTCGAAGACGAGTGGAATGAGGAGCCATGATAGTCATCGTTCTCACTGCATGCCCTTCAGGATTGCGCGGGGATGTGAGCAGATGGCTACTGGAGATATCTCCTGGTGTCTTTGTGGGACATATCAGCGCTCGTGTGCGTGAGAAGTTGTGGGAGAGAATCGTCGACACGCTTAAAGACGGTAGGGCTATTATGGTGTTCTCTGCGAGAAATGAGCAGCATCTTGACTTTCGTGTGTTCAGGTCTGATTGGAAGCCAGTGGATTGTGATGGATTGCAATTGATTAAACATCCGAATGAGGAAAAGCACGATACCTATGCGGGAACGAAACGGCATGGGTGGAGCAACGCAGCCAAATATAGGCGTGCGAAGAAATATCGTGGTTAGGCTTGTACATTTCGTAGCCGCCTCCTTCTCATTGAGACCATGAAGAGAAGAAGTGAAGGAAAACGGTTTTCTCCTCATTCTGATATGTTGGAATTATTGGGATTTCATAGC # Right flank : GCGCTCGTCTCCGACCTACGCTGCGATTTGACGTGTGTTTGTGTTCAATTAGGGATTGCGGTTTTAGTCATGTAAAAGTTTCGGGTTTGGTCATGGGAGCATGCCGACCACTGTTACAGGGCCTTGTTTGACTGGGAGCGTCTGACTTCTTCCAGTTGAAAGGTCCGGAAAGGCAATGATCAGCATGTCCGTCATTCACTCTATCCGTTGCATGCGAAAGGAAGGCGCGTCCGTCGCCGCGATTGCGCGCGAGCTGGGTATCAGCGAGCCGACGGTGCGCAAGTACCTCAGGGAGGTCGACCTGTCCGACAGGCCGCCGGTGAGGCGTGAGCGGCCGTCGAAGATCGACCGGTGGGTGCCGTTGATCGAGGGCTGGTTGGCCGAGGACCGGCGGACGTGGTCGAAGCAGCGTCATACGGCGACCCGTATCCACCGGCGTCTGGTTGATGAGTGCGGCGCTGATGTGTCATTGTCCACCGTGACGCGCAAGGTGCGCGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCAAGCGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCAAGCGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //