Array 1 29714-33611 **** Predicted by CRISPRDetect 2.4 *** >NZ_MCHY01000007.1 Ammoniphilus oxalaticus strain RAOx-1 contig_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ======================================= ================== 29714 32 100.0 36 ................................ TCGCTGTACGAAGGAATCAAATGTGCATCGCTCAAA 29782 32 100.0 35 ................................ TCCGCTCCACATCTATTTAAAGTAACGAGGTTATA 29849 32 100.0 34 ................................ TTGTGCTAGGATGAATATGGCCGACATAAACAGT 29915 32 100.0 35 ................................ GGGTCATTTTGAAAATCTTCAACATAATGACCCCG 29982 32 100.0 34 ................................ GCCTGTTGGTGACGAGCCTATCGTTACTACGAAC 30048 32 100.0 34 ................................ TCTACGCAATCAGCGACGGTCAGCTTGCGGCCGG 30114 32 100.0 34 ................................ CGTCCTTTTCAATAGCGGCATTTATCCACAAAAC 30180 32 100.0 36 ................................ ACTAGGAAATCTAAGTCTTTATTTATCTCGCGAGAA 30248 32 100.0 35 ................................ ATCTGTGGGATCTATAATCACATTGCTTGGGACTG 30315 32 100.0 36 ................................ GGCTATACAGAACAATGACCTCAATGTTTATGTAGC 30383 32 100.0 34 ................................ GGTTTACAGGTGGCTAACAAAAGACGTTAAGGAG 30449 32 100.0 34 ................................ TACCAACAGATTTGGAAAGAGAGTTACGAGTTGT 30515 32 100.0 34 ................................ AATTTTTTAGGAGGTTTGTTATCTACATCAGACA 30581 32 100.0 34 ................................ CTTTTTCGTTGTACCTGAACGATGGAACTTGTTT 30647 32 100.0 35 ................................ AATAGTCCCGCACTCTGTGTAGTCCAAGAAAAAAA 30714 32 100.0 34 ................................ TCACTGGTTAACCCCTCAACAAACTGGATAATGC 30780 32 100.0 34 ................................ TCTTGTTGTAACAACACCATCACGGCGACGGAAA 30846 32 100.0 34 ................................ TTTGGTGACACTTAACTCATGTCGATCGACTGAC 30912 32 100.0 37 ................................ TTATAACACAACCATCTACAACGAGCGTGGCATATAT 30981 32 100.0 39 ................................ AGCGCAACCCGCAACTGAATACGACAAGTTGCAGATTCA 31052 32 100.0 35 ................................ AAGAAGTTGAGGCGATTGTTGAGGAGGAGGCTTAA 31119 32 100.0 33 ................................ TTCTGGTGTAGCCCCCTCAACCCACTCTCCCCC 31184 32 100.0 34 ................................ GACTATCTTTGGTATGTTCGAGTTACCTTGAAAA 31250 32 100.0 35 ................................ CGTTGTGTAATGAGTGCCACTCAATCATACATAAC 31317 32 100.0 34 ................................ AAGTCATAAAAGTCCACGCGATGCCCCTCGGATA 31383 32 100.0 35 ................................ ATGACCAATAGGGCATCGTTTAGGTCACTCATATA 31450 32 100.0 34 ................................ CCTCTAAAATCCCATCAACCGTCTTTTGTGTGCG 31516 32 100.0 37 ................................ TTTGAAGTCTCCCATTGTCTAACAAGGATATTTAAAA 31585 32 100.0 35 ................................ CTGTGTGTCTGTCGCAATGTAATCATCACCCGACA 31652 32 100.0 35 ................................ ATGCTTACGATGGTATTAGGACTGACACCCAACAG 31719 32 100.0 34 ................................ AACTAACCACGTTTTTATAGATCCGTTAGAGCTA 31785 32 100.0 34 ................................ ATCAACTAGCACATCATCAGTTAACCCTCGCTTA 31851 32 100.0 34 ................................ GCATCTGGGGCAATCCATTACCTCACCCCCGTAC 31917 32 100.0 34 ................................ ACATCGTCCATGACCGTTTGGTTTTAAATGTATA 31983 32 100.0 35 ................................ TGTCCAGTGGGCATATAGGTGATTTCGGGCATAGA 32050 32 100.0 33 ................................ TGTTCCAATCCGAATAATTTATAGCGCAACGCC 32115 32 100.0 35 ................................ TCGAAGTAAGCGGCGTTAAAGACTACGAAGAACTG 32182 32 100.0 34 ................................ CGTCAGGCCCTCGCAATCCAACATAAAAGCACGA 32248 32 100.0 34 ................................ ATTGTTCTGAGTTCAAGTACAAAAGAGAGGTTAC 32314 32 100.0 34 ................................ TTTAATTGGTCAACACCTTGTACATTTAGATTAA 32380 32 100.0 34 ................................ TTTAATTTCGGTAACCCTGTGGCTTGTGATTACT 32446 32 100.0 34 ................................ ATTCGACTGACTCCCCTCTCCCCTCCTCCCCGTT 32512 32 100.0 34 ................................ ATTTTATGCCTCCTCAAATCGTCTAACTCCGCTT 32578 32 100.0 36 ................................ AAAATTGTTCGTCCACCTTAGATCCTGTTAATTCTT 32646 32 100.0 35 ................................ GATTTATCTAATGTTGAATATCCACCAATCGCAGA 32713 32 100.0 34 ................................ AATTTGGCTTGTGCTGTATCAATCCCGACTAGGC 32779 32 100.0 35 ................................ GATCCTGACAACGTTTTAATGCAAGATGCTAAAAC 32846 32 100.0 34 ................................ AGATTCACCTGTGACGAGTCCTAATGTTCTTTCA 32912 32 100.0 34 ................................ TTTAATTTCGGTAACCCTGTGGCTTGTGATTACT 32978 32 100.0 35 ................................ CCCCTTGTGCTAATTGCATCCGTTTATTTTGAGCA 33045 32 100.0 35 ................................ TTTAATCCAAACCGCAGAAGGCGCACTTAATGAAA 33112 32 100.0 34 ................................ AATTGGTAAAGTATCATGAGAACTATATCCGGTA 33178 32 100.0 34 ................................ AAGCATCAGTGATGCTACTACTGTAAACAATACG 33244 32 100.0 36 ................................ AATATAAAAAGAACAATGTCGTAGCCTATAATGGAT 33312 32 100.0 35 ................................ ATGCTGTCCCCGTTTATCCGCATCATGAATATGTC 33379 32 100.0 35 ................................ AACCTCTTTGGGTCTGAGTATCTTTGTAGAATTAT 33446 32 100.0 35 ................................ CTGAGGGGGCCAAGTTTACCGACACAATTTACACA 33513 32 100.0 35 ................................ TAAAGAAACGCCAGCGGGGGCACAAAGCAAGGTGG 33580 32 96.9 0 ..............................T. | ========== ====== ====== ====== ================================ ======================================= ================== 59 32 99.9 35 GTCGCACCCTTCGTGGGTGCGTGGATTGAAAT # Left flank : ATACCCGCCATTCCTATGGAAGTAGGTGAAAGTAATTGCTAATCTTGATCACGTATGACGTTTCAACAGTGGATAAAGCAGGGAGAAGAAGACTTCGTCACGTGGCAAAGGCTTGCCAAAAATATGGACAGCGGGTGCAAAACTCTGTTTTTGAGTGTATAGTAGATGCAACGCAATTCACAAAATTAAAGATGGAGCTTGTTAATTTGATTGATATGGAGGTAGACAGTCTTAGGTTTTATAGACTGGGTAACAATCACAAGAGTAAAGTAGAACATTTTGGTGTGAAGGAATCGATGGATCTAGAAGGGCCTTTAATCTTTTAACCCTCGGTGCGGATAGTAAGTGAACATAAATTACCTAGGACATCCGCACCTAGGATATTGTCGATAATTATCGAATGTGACATTTAATTTAACTGAGTTCTTTATTCGAATAAAGAAAATAGTGATTTTTGAGTAAAAAAATCTTAATTTGCTCACTTTTAGTCAAAAATCGCT # Right flank : TGTAAAAATGGGTCAATTCAAGTGCGACAATTGAGATTATTATAAATATAAACAATATGACCACCATAGCTTAGATGAACGCCCTTGGACTTTGATTTTTCGTGTGAATTATGACTTACCTTGTCATATCCAAGGGTGTGTGGATTGAGGTTCTTGTTATTTCTCTTCTGTTCATCTTTCAGAGTTGAATCCCACCCTCCATCCGTCCCCAGAATACCCTCTTGAAAACAAGAAAAAAGCTGACCCATGACGAGGAGTTACACCCGCAAACTACGATTTGAGCGGGGAAAACACCTGGATGGATCAGCTTTTTTTAGGCCTTTTTGACAACTTTTGATTTTAGTTTCATTTGACCAAAACCGTCGACTCTGCAATCGATGTCGTGGCCGTCTCGGCTGCCGTCAACTAAGCGGATATCATTTACTTTGGTTCCAATTTTGATTACGTTCGAGCTGCCTTTTACTTTAAGGTCTCGAATCACGGTAACAGAATCCCCGTCT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCGTGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.50,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //