Array 1 40468-40145 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023670.1 Methylomonas koyamae strain LM6 plasmid pLM6, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 40467 36 100.0 36 .................................... GATGCTGCCCTGAACAAGTTCGTGTGTTTTGCGTTC 40395 36 100.0 36 .................................... AAGGTCAGCCTCGTAAAACCGGTAAAACCGCATATC 40323 36 100.0 36 .................................... TCTACTAGGTCATGTACTGGGAATGATGGCTCTGAT 40251 36 91.7 36 ........G.......G....C.............. AGTAGCCCCGCAATTAGCGAAATCTGAATGTTTAAA 40179 35 94.4 0 ...-..................C............. | ========== ====== ====== ====== ==================================== ==================================== ================== 5 36 97.2 36 GTTACAAACCCTGCTCATTGGGTTGGTTAATGAGAC # Left flank : AATCTATCGCCACATCGCCAAAGAACTGGCAGAGCGCTATGCCGTTCTAGCGGTAACCGATACGCCGCTCAGTACGATGTCGAGAACCAAGGCGAAAGACGATTTAGCTGTCGATAATGCGCTGCCCGAATCCGCCCGGAGAAATCGCGTAATCGCCGCAATCTACTCGCTGAAAGAATGGATAGGCAAACAAGCGGCAAAAACCGGATCAACTGTCGAAACGATCACCGGCAAAATGACGGCGACATGCCACAAATGCGGCTACGTCGCCGAGAAAAGGCTTCGCGGCTCGCAATACGCTACTTGCAAAAGTTGCGGTTCCGAATTGGAGCTGGACGAAAACGCTGCGATTAACTGCCGAAACCACGCGAGCGGTGCAGTGCTAATCTCAGATAAACCAGAGAAAACCGGGAGATTTCAACGTGCTAAAATGGCCGAAAATGACTTCGCTCGCAAAATAGGTGACAATGCCTCGCCTCTCGTGACTTAGGCGAACGCCA # Right flank : AAATCCCCGTGCTCCTTTCAGTACAGTAAAGTCGCTGTAGGAAGGCAATAAGATTCATCGACCAACGAAAGACGCATTGGCAATTACATAGATCGGAATCCCGAAAAGTGATGCACATATAGCGACTATGGTTAATGCTAATGTGTGTGTTAGGCATAAAACGCCAATAAGACACCATTCGCTGTAATATTACACTTAGCAGGTTGGTGAAAAACTCTTTTTTGGCTTTGAATGACTCTATATTTAGTGACGATGAAGCCGATTTCCTACTAAATGCTGGTTCGATTGAGCAAAATTAGCGTCTCAAATATAGTTTTTCACCAACCTGTTAGGACTGTAATATTTAATTACGTCATCGGTCGCTATTATCACCCATATAATGTACATGTTTCATTGAAGATAATTTGGTCTATTACCACGAATGATGTGACCCTTGTCATCAATGCGACCCTCCTTGCGCAACGTTTTAACGAGCAAGCTGCGCAAGTACGCATTCATTG # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTACAAACCCTGCTCATTGGGTTGGTTAATGAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 1 1412277-1416275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023669.1 Methylomonas koyamae strain LM6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1412277 29 100.0 32 ............................. TTGCTTTATTGTCACACGTGACATTAATTAAG 1412338 29 100.0 32 ............................. ACAATCTCTGCACGAATACGGCGACGAGCGAT 1412399 29 100.0 32 ............................. GTCGGCTTAGCGAGCAAACCCCGCACATCGGC 1412460 29 100.0 32 ............................. GACGCAGCCGAACAGCGATGCGACGAGCGAAA 1412521 29 100.0 32 ............................. CCATTGACCGAGTGATTCCGTTAGAAAGCCTG 1412582 29 100.0 32 ............................. TCGTAGGGGGTGCCGTCTTCCAGCGTGCCTTT 1412643 29 100.0 32 ............................. CCATCGATAGAGTAATCCCGTTGGAGTGTCTG 1412704 29 100.0 32 ............................. GAGGCTTGCTAGTCACACCGCCCAAGTCAGAT 1412765 29 100.0 32 ............................. CCAACTGAGCACGTGCCTTCTGGTCGAATTCA 1412826 29 100.0 32 ............................. TCAAGCCCGCGGTGGCGGTGTGTCTCGTACGC 1412887 29 100.0 32 ............................. GCTTCAAGGCCGAGGCCTTGCAGGTGTAGCGG 1412948 29 100.0 32 ............................. TCAATGTTTTTTGGTAACGTTGCCGTAATTAT 1413009 29 100.0 32 ............................. GCGACTCTGTAGTTAATTGGAATGTCTCTAAC 1413070 29 100.0 32 ............................. GAAATCGAAAAGCGGATTGAGGACGGTATAAA 1413131 29 100.0 32 ............................. AACGAGGATAAATTAGCCAGGCAACAAAGCGC 1413192 29 100.0 32 ............................. TCAACCAACCGATGCCGAGAGCAGCAAGCACC 1413253 29 100.0 32 ............................. CGGCAGCGTTTGACGTGTCGTCAATCGATCCC 1413314 29 100.0 32 ............................. TCTGCTTTACCAGCGATCGGATAGCAGATGCT 1413375 29 100.0 32 ............................. GCCGACAACAGTACCACGCATCAGTATTTTAC 1413436 29 100.0 32 ............................. GTCCATAAATAGAGATCGAGCATAACCCACCC 1413497 29 100.0 32 ............................. TAGTCCCATTCTTCCTCCTGTTTTAATTCTTA 1413558 29 100.0 32 ............................. CGCGTGGCGTTGTTGGGAGCATCGCCATGAAG 1413619 29 96.6 32 ............................A GCAGCGCCAGGCGCCAACAGATGGCCTATGGC 1413680 29 100.0 32 ............................. ATATCGTCGATCGCATTCGCAATCGGTTCAAA 1413741 29 100.0 32 ............................. GCCGTACGGCCGCTGGATTTAAGGGATGCCAT 1413802 29 100.0 32 ............................. TCGTCGCGTTTCTTAACTGAGTAGTCTTGAAT 1413863 29 100.0 32 ............................. TAGATGAACTCGGCCTCGCCATAGGTCGGGTG 1413924 29 100.0 32 ............................. GACAATCCGTCGGCATTTTTAACGCTTGTCGG 1413985 29 100.0 32 ............................. CAAACTGGGATTTGATCTGCTGCGCCGTGGCT 1414046 29 100.0 32 ............................. CCGTTTTTCGCATCGTCCGATTCGGAGATCGT 1414107 29 100.0 32 ............................. ACGACGAAGGCGGTCCGGAAATCTACGCTGCT 1414168 29 100.0 32 ............................. CGGAGATGATGAAACTGGTGGTCAACCGCCCC 1414229 29 96.6 32 ............................T TCATCGACGACAGCCAGAGCGTGTTCAGTTTG 1414290 29 100.0 32 ............................. TCGCGGAGCTGGCAGCGCGTTTGAACATGCGC 1414351 29 100.0 32 ............................. TAGCGCTGGTAACCGTACCTTGGTATGACGAA 1414412 29 100.0 32 ............................. CAACGCCGCGCGCTTGATCAGCTCGCTATGCA 1414473 29 100.0 32 ............................. TATGTGCTGAGCGCGGTGCTGGGCTTGGCCGG 1414534 29 100.0 32 ............................. AAAGGCTTGCAAGCGTTGCAAGCCGGTGCTCG 1414595 29 96.6 33 ............................A AGCCTGGCAACAGTGAGCAACGGCCCGTGTCAC 1414657 29 100.0 32 ............................. GGAACGCCCGTGAGCTTTACGCGAAGGTGTAT 1414718 29 100.0 32 ............................. ACGTCGCCCGTTATCGGTCTCTAATATCGTAA 1414779 29 100.0 32 ............................. GCTGGATCGTGATGGTTGCCGTTCTGACCGGT 1414840 29 100.0 32 ............................. CTATTACGATTATTGCTTGTCTTGTGGCCCTC 1414901 29 100.0 32 ............................. GCGGGGTTTCCCCCGCCTGAATCGCTATTAAG 1414962 29 100.0 32 ............................. CCGCAAAACGCGGAACGACTAGCTACAAACTA 1415023 29 96.6 33 ............................A AGCCTGGCAACAGTGAGCAACGGCCCGCGTCAC 1415085 29 100.0 32 ............................. CGCGTTTCAACGGTTCGTCCAATTCAAAATCG 1415146 29 100.0 32 ............................. TCTGCTGATTCAGGAAAATCAACGTCTTCGAA 1415207 29 100.0 32 ............................. GCCTTCTAATTCCTGAATATCAACCGAACGAG 1415268 29 100.0 33 ............................. GGTCAAGGGCGGCGGTCGAAAAATCGACTCGAC 1415330 29 100.0 32 ............................. CGGAGGCCGACCAGGAGAAACGCGCCGGAATT 1415391 29 100.0 32 ............................. GCTTCGGCTTTGGGCTTGTTGGAGCGGAAGAT 1415452 29 96.6 32 ............................T TCATCGACGACAGCCAGAGCGTGTTCAGTTTG 1415513 29 100.0 32 ............................. GAAATCACATGTGCCACTTCCCGCTCAGCAAT 1415574 29 96.6 33 ..........T.................. GAGCCAGACATGATCAACGACCACCTCACCCTC 1415636 29 100.0 32 ............................. ATTGTGCCGATCGGTAATGCAATGCTTATCAG 1415697 29 100.0 32 ............................. AGCACAGCCCCACCCCACAATAAACCATCGCC 1415758 29 100.0 32 ............................. CAACGCCGCGCGCTTGATCAGCTCGCTATGCA 1415819 29 100.0 32 ............................. TATGTGCTGAGCGCGGTGCTGGGCTTGGCCGG 1415880 29 100.0 32 ............................. CGGGCTGCTCGGTGACGACCCGGCCTTTGTGT 1415941 29 100.0 32 ............................. AAAGGCTTGCAAGCGTTGCAAGCCGGTGCTCG 1416002 29 96.6 33 ............................A AGCCTGGCAACAGTGAGCAACGGCCCGCGTCAC 1416064 29 100.0 32 ............................. CGCGTTTCAACGGTTCGTCCAATTCAAAATCG 1416125 29 100.0 32 ............................. TGGCCTTGAAGCTGGTTCGTGGCAACGACAAA 1416186 29 96.6 32 .......T..................... AAGAGTTTCTGGCCACGCAGAAAAAACACGCC 1416247 29 79.3 0 ...........G............CTTAT | ========== ====== ====== ====== ============================= ================================= ================== 66 29 99.3 32 GCGTTCCCCGCACCCGCGGGGATGAACCG # Left flank : CAAGGTGCGCGAGATGATTTGGTCGCAAGTCGAGCAGGGCCTAGAGGAGGGCAACGCCGTGATGGTATGGAGTACCAACACCGAATCCGCTTCGATTTCATGACCCTGGGAAAAAACCGCCGACTGCCGGTCGAGCTGGACGGCTTGAAACTGGTGTCGTTTTTTCCACCGGAAGATGCCGATTCGACGCCCTCGCCCTCAGGGAGCGGGCCGGGGTGAGGGGAGAAATGCGCACTATTAACCCCGACCCTTAACTATACCGTTCGCCTTTATGCCCCTCGGGTACTGAGCCCGTCGAAGGGCACAGCAGCTTGGGCTTCGACCCGCTCAGCCCGAACGGAATACATGTGATAAACGGGGTCGGGTGAATAGATGCCTGGTTAGATATAGAGCGCTGTAAGATGTTGCGCCCGCTTTTTAACAACTTGGAAAACACCGAAAAATTCGGTAGAAAATTCGACCGGTTGTTTCCGTTTATCTAACAATAAGTTAGCATTAGT # Right flank : TAAAATCTCCCCCAGCCCCTCTTTTTCAAATAGGGGAGCTTGGCAATGTTGGCTTATCGGAATTGGCCCGTGTTGCAGGGACGAACGGTGTTCGCCGATGCCGGTCGGCGATTGCCGGCGCGTTTTTGGCTTCGGCACGGTCCGGTGGCGGGCAGCCGTTGGCTAGGTTCGAGATTGACCGGGGCGAGCAGGGGCACTTACTATCTGCACTCCCGCCACACCGCCGGACGTAGCTATGGGCCAAGAAATCCGCGCCGCCACGTATCAAGAAGCCGATTTTCAGCGGTTTTGCCAGCGTTTGCAGGCGGAAACCGAGTTGCTGGGGAGATTGGTCGCCGCTAAAGCCTGTTCCGAAGCCGAGCCGGTGGCCGGCTTCGAAATCGAAGCCTGGCTGTTGGACGCGCAAATGCGGCCGGCGCCGGCTAACCAGGCATTTCTGCAATCTTTCGGCCAGCCGCTGGCCGGCCCGGAGCTGGCTAAATTCAATATCGAACTGAACA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCGTTCCCCGCACCCGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCGTTCCCCGCACCCGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2121921-2129517 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023669.1 Methylomonas koyamae strain LM6 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 2121921 28 100.0 32 ............................ AGCGTCAGCAGCATCCGCCGCCGGGGCGTCGC 2121981 28 100.0 33 ............................ AAATCGTCCACCGAGCTTTTGATGTACACCTTT 2122042 28 100.0 32 ............................ TGAACCAAGCGGTTGTAATCGTCGTCGCTGAG 2122102 28 100.0 32 ............................ AGATGCGGCTCCAGTACAGATGCCATGCGCTG 2122162 28 100.0 32 ............................ ATCTCGAACAACGCGACCGCGAGCAGTTAGCC 2122222 28 100.0 32 ............................ GTTTCTCCAATGGTGGCGGCTCATCCCCCGCC 2122282 28 100.0 32 ............................ GGACAAAAAACTGCTGTCGAGAAACGCTGGCA 2122342 28 100.0 32 ............................ TGCAACCGGTGAGCTATCCAAGTCTTTTTAAC 2122402 28 100.0 32 ............................ AAAGCCTTCGCCGATGTCGAAAACGCCTCGAC 2122462 28 100.0 32 ............................ TGAATGCCGACGAGCTGGATGTCAATGGTGGT 2122522 28 100.0 32 ............................ ATCCAAACCCGCGTCGATCAGTATTACTCCGC 2122582 28 100.0 32 ............................ TTAAACGGTTACCGCACCATCACCAAAGCCGG 2122642 28 100.0 32 ............................ TGCTGGACCACGTCCGGCTCTGGCAATAACTA 2122702 28 100.0 32 ............................ TTCAGCCAAAGCATTTTTTGTTCTACTAGTAA 2122762 28 100.0 32 ............................ ACCCGATGGGCCACCCCATTAGCCACTCGACC 2122822 28 100.0 32 ............................ TTGGGTGGGCGGCAAACGCCGCCTGGCTAAAC 2122882 28 100.0 32 ............................ GACTAGCGCTGCCGATATTTGCTTCGATGATT 2122942 28 100.0 32 ............................ CAACAAGAGCGCTTACTAAATCGGCTATATCC 2123002 28 100.0 32 ............................ TCGCCATGCCCTTCTGCAGAGAGGCCGTAATG 2123062 28 100.0 32 ............................ AACACCAGAGCCTTCGGCGATTTTCGCCATGC 2123122 28 100.0 32 ............................ GACGACTATAAGATCGCGGATGCCACCGGGAC 2123182 28 100.0 32 ............................ ATCAGGAATCAACACACGCGGTGTATTGGTGA 2123242 28 100.0 32 ............................ GGAGTGAAGGTGCCGGGCGGCGTTGCCAACGG 2123302 28 100.0 32 ............................ AGTTGGCCGGCGGCTTGCTCTTGGTTTTGGTC 2123362 28 100.0 32 ............................ GGGCGGCGATTACGCGGCCAAGGCAGCGGTGC 2123422 28 100.0 32 ............................ GCCGAGTTGCAGAGCCGGTTGCTGTTTCATGC 2123482 28 100.0 32 ............................ CGATATCGTCAACGAAACGGTGCGCGCGCAAA 2123542 28 100.0 32 ............................ ATGGGGATGTGCAAAACGGCGACGGTAATACC 2123602 28 100.0 32 ............................ TCACGCCGGCGCGGATGTGTATCTCGCGTTTC 2123662 28 100.0 32 ............................ ATATTCAATGCCAGACAGCTCGGCGAATTTTT 2123722 28 100.0 33 ............................ CACCGTTACACTCTTCAGGGCCGCAGGTATGGC 2123783 28 100.0 32 ............................ TCCATTGCTTGTTTCCACTTGGGATGCTCGAT 2123843 28 100.0 33 ............................ CAATGAAATTTCGTATTGCACTTGCCGGTATTG 2123904 28 100.0 32 ............................ ATGTGCTGGCTTTGATTCCCGTTTCCTTTTTT 2123964 28 100.0 32 ............................ TAGAGCTGTTTTGTATATTGGTACTCTAGGCT 2124024 28 100.0 32 ............................ TGTAACGCTTTCAGTAATTCGGTGATTTCTTC 2124084 28 100.0 32 ............................ ATTAGAGGCGGTTGACAACGTGCCACATTGAG 2124144 28 100.0 32 ............................ GTTCGTTTCTCGTCGATTTGCGGCGTTATTTG 2124204 28 100.0 32 ............................ TTCAATTGGCTATGATCCAGACGACCAAGCTT 2124264 28 100.0 32 ............................ TCATCGCGAGCTGATCTAAATATTTCGCCCGA 2124324 28 100.0 32 ............................ AACCGCCGGTTGCGTTCCAGTTCGGCGCGCCG 2124384 28 100.0 32 ............................ GCCCGCGGCTGGCCGCGGCGGAAAACGTATGA 2124444 28 100.0 32 ............................ AACAGATGGCCTATGGCTGCCGCGTATTCGCC 2124504 28 100.0 32 ............................ GATCGCAGCCGCCCAGGCTTTTGCCCAGCTTG 2124564 28 100.0 32 ............................ TTCACTCCGAACACTGGCACTGTCGCAGCTAA 2124624 28 100.0 32 ............................ TACGACTGCGAAGCCTGGCAATTGGATGCTTC 2124684 28 100.0 32 ............................ GACGCCACAACAATCGGCGTCGCATTGTACGG 2124744 28 100.0 32 ............................ ATCGAAATTAAGCAATGCATCGAGTTTTTCCA 2124804 28 100.0 32 ............................ GTCCACAAACTCCGGCGCGGATCGCTGTTTTG 2124864 28 100.0 32 ............................ TAACACCTGCTCCATTGCGTAATAGATCAACG 2124924 28 100.0 32 ............................ AAACCAATACCGGATCGGCGGTAAAATTTGCA 2124984 28 100.0 32 ............................ AGAACCCGACGCAGTTTTAGCGGTGATCGAAT 2125044 28 100.0 32 ............................ AATGACCAGTTACGCCGACGACCTGCGTAAAC 2125104 28 100.0 32 ............................ ATATCGGCACGACGTTCGTTGAACCCGTGCGC 2125164 28 100.0 32 ............................ ACTGGAACTTCTCGCCCGGATGCTGCACCATA 2125224 28 100.0 32 ............................ ATCGTGATTTGGTCGGCACCTTTCCGCTGAAT 2125284 28 100.0 32 ............................ GTTTATCGCAACGGACAGCTCGCGCCGGTATT 2125344 28 100.0 32 ............................ CGAAGCGGGTGGAGCGGGTTGGAAACCGCTGA 2125404 28 100.0 32 ............................ AAAACCCGCGCCAAACAACTCAACGCGGCGAT 2125464 28 100.0 32 ............................ GACAGCTCCGGCACCGGCGCCAAAGACATTAC 2125524 28 100.0 32 ............................ GCCAATACCGAGATTGCCGGCAACAGCATGGT 2125584 28 100.0 32 ............................ GAAGCGCGCCGGCTGGCGATTTTGCAGCTATT 2125644 28 100.0 32 ............................ TATCGTGGGGAACGGTCGAACGGCATCGACCG 2125704 28 100.0 32 ............................ CGCATAAGTTTTATCCCAACAAAAACGGCTAC 2125764 28 100.0 32 ............................ GTCGATCCCTCATTAGTTGCTTCGCTCTTCAC 2125824 28 100.0 32 ............................ TCTCCGACGCATTAGTTGCAGCTGTCAGACAC 2125884 28 100.0 33 ............................ GAGCAAAAGCCAAACCAGCGGCCAGTTTTGTCG 2125945 28 100.0 32 ............................ GACATATCAGCCAGCGGCGACGCCGGTAGCAG 2126005 28 100.0 32 ............................ TAGCACAACCCCGACCATCCTTTTCGTGCCGG 2126065 28 100.0 32 ............................ ATTTTGCGGGTGCGGCCGGCTAGCGTGGAGGC 2126125 28 100.0 32 ............................ TTGCACCGGTTAGGCGCAAGGCCGATGAAATT 2126185 28 100.0 32 ............................ TGTCATAAAGAGCGGGTAAGGCCAGACAAAAG 2126245 28 100.0 32 ............................ TTCAAAAGCGGCTTGATGATCGTGCAAAACGT 2126305 28 100.0 32 ............................ GATTCGCTGGGTTGGCGGTGTAACGATCGAAG 2126365 28 100.0 33 ............................ TTCGCACAGATAAACCCGATCTTCCGGCTGGAT 2126426 28 100.0 32 ............................ TTTTCGTATTCGTTGGGGTCGATCTTGAACGA 2126486 28 100.0 32 ............................ CAAAATTGTTACCACTCTTGATTACGTTGGTT 2126546 28 100.0 33 ............................ ACCTCCCCGGCGGCGATGCCGGACGAGTTGATC 2126607 28 100.0 32 ............................ ATCACAGCAAAGCCAATAACCACTCGGTGGAA 2126667 28 100.0 32 ............................ GCTCCGGTGGCTTGCCCATGATTTCGTTGTAC 2126727 28 100.0 32 ............................ AGCACCACACCGATTATTTGACCGCTTATAAA 2126787 28 100.0 32 ............................ AACCGACCAAGGAAATGACGATAAAGGCCGTG 2126847 28 100.0 32 ............................ ATCATCTGTAAGCCCTCATTTTCCCGTCCCAG 2126907 28 100.0 32 ............................ TGGTTGATCGACGCCGGCGGCCGGAAAGTCAA 2126967 28 100.0 32 ............................ ATCAATTGGTTCAACGTCCAGTGCACAGGTTG 2127027 28 100.0 32 ............................ AAGGTGGTTAAGGCGTCGGCGGTGAGCGATTC 2127087 28 100.0 32 ............................ AAAAGCCGGCAGCGGAGCGCCAGCGCGGCCAC 2127147 28 100.0 32 ............................ ATAATCCCAGACGACGGAGTAAAGCTGTGAGC 2127207 28 100.0 32 ............................ TGTTGATAGTCACGAAGCACCAAATTCATTTA 2127267 28 100.0 32 ............................ TATATAAAATCGCCCGTGCTTCTTTAGGGGAA 2127327 28 100.0 32 ............................ TCAGGATGGGTAATGCGGAACTTCGGGGCATA 2127387 28 100.0 32 ............................ TTCGGCAACACCACATACTCGTTCAAGATCGA 2127447 28 100.0 32 ............................ ATAAACACGCCCAGGTATTCGGTCAGCCGGTT 2127507 28 100.0 32 ............................ AGCCGCCAGATCGCGCCGACGGTGCTCGATTC 2127567 28 100.0 33 ............................ CAAGCAATCGCTGCCTAATACCAAGCTAATGAT 2127628 28 100.0 32 ............................ TTTAAGCTTGAGACGACGTTTCCGCATTTTGG 2127688 28 100.0 32 ............................ AGGAAAAGTATTAGCTAAGGCGGGCTTTGAAA 2127748 28 100.0 32 ............................ ACCAACACGCTGCCGGCCGCGCAAAAAATCGT 2127808 28 100.0 32 ............................ AGCAAAAGAAGATGTACCGAGCCCAGGCGCAA 2127868 28 100.0 32 ............................ TCAGCCCGCAGTGTTACGCCAGCGCCGCGCCT 2127928 28 100.0 32 ............................ TTGGCCAGAAAAAAAACAAGTCGAACGGCAAG 2127988 28 100.0 32 ............................ CCATTGCTCAAGCTCTTTAAGCAAGGGCTCAA 2128048 28 100.0 32 ............................ TTGTGGGTTTGCTTGTATTGTTTTCATATCTG 2128108 28 100.0 32 ............................ CGTATCCGCCGTGCAACCTGTTTTGCTCTTGA 2128168 28 100.0 32 ............................ TAAAGGCGCACCGCCATTGACGGCGCTGGTAA 2128228 28 100.0 32 ............................ AATACCGAAGTCGATCAATATAGCGACGAAAC 2128288 28 100.0 32 ............................ GGGGGCCAATAAGACCACGCCGCTGAAAGACA 2128348 28 100.0 32 ............................ GTAGGGATAAGCGGGAAGCGGCCTATTTGAAC 2128408 28 100.0 32 ............................ GGAGAACGATTTTGGCCTACCCGCGACGAAGA 2128468 28 100.0 33 ............................ CGGATGAAACCGATTGCTATCTGCGGCATGGGC 2128529 28 100.0 32 ............................ TTATGACCGCAGACCTATCGAAGTGCCCAGGG 2128589 28 100.0 32 ............................ AAGGCATCGAACTGCTGTTGCTGCAGCGGCAC 2128649 28 100.0 32 ............................ GGCTGTCCGCAAGCGCCGGTCAAAACCGGCTG 2128709 28 100.0 32 ............................ GAGTATTGCCATCCAGGCCATAAGGCACGCAA 2128769 28 100.0 32 ............................ GGCCGCAAGCACATGATCGGCATCATCATGAA 2128829 28 100.0 32 ............................ GATACTGAAAGCCGTCGCCGATGTGGTTACGC 2128889 28 100.0 32 ............................ GCGAACCGGCTTGGGCGGAAAACCGCATCAAA 2128949 28 100.0 32 ............................ CCCGATATGACATAGCCAACGTCAACGCCAAG 2129009 28 100.0 32 ............................ TATTACCGGCCGCCGGTGGATTTGACCGGCCT 2129069 28 100.0 32 ............................ ACATTGCTTTGTGCTGCCACCGATCCCACCAC 2129129 28 100.0 32 ............................ CTTGACGTATCTCACGAGCCGCAAATATCAGG 2129189 28 100.0 32 ............................ ACAGCGCCCACATCGCATCCCAACCGGCATAG 2129249 28 100.0 33 ............................ CTCGACGAGTTCGACGCCGGCCTGTTTGTCAAA 2129310 28 100.0 32 ............................ AGCGGAAACGCACGTAAGGCGTGAGCTTTGAT 2129370 28 100.0 32 ............................ GAGCGCTGCAATCTGCCGTTTTTAGTGGTCAG 2129430 28 100.0 32 ............................ GTAAGTCAACGCACACGCGCGCCGGCCGCCCG 2129490 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 127 28 100.0 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : ATTGCACCGGCATCCGTCCGGTGCCGGATAAGCTGTTGGGGTATGCGGTTTACCGGCGGGTGCAGCCCAAGACCAACCCGGAACGCCTGGCTCGGCGCTACGCCAGGCGCCACGGCGTGGATTTGGCGACCGCGCTGAACATGACGGTTGAATTGCGGGCGGCGGGCGATAATTCGGCGTACCCGTTGTCGTTTCGCTATTGCGACATGCTCAAGCCTTCCGTGGCCTTGCCGTTCATCCGCTTGCAAAGCTTGAGCGGCGGTCAGACCTTCTGTTTGTGGATCAGCAAAACCGAAGCGGTCGCGCCGGTGACCGGCAGTTTCAGCGCTTACGGCCTGAGCAGCGTCGCCACCGTACCCGAATTTTGACCCAAAATTTTTTCGCTCTTTAACAATGTGAATTAAATCAGCCGGTTACGGTTAAGGCTTTTGCGGATGGTAAAAATGGGTCAAACCGCCCGCAACCCTTGTCGCGACCGGCTTTCCGTTTATTTATAATCA # Right flank : ATGAAATCGAAGGATGCCGGGGTTAAATTGGCAGTGGAGTTTGACTACATCAAGAAAGGCAATCCGGCCGTCAATATGATCGTTTCCGGCTTTAGTCAGGCTACCAGAACCATTGAGGAAAAGATTCGAGGGGGATTTATCAGGCGGTGGAATGAGAGCGGGAGGCCGGCCGTCCCTCCATTCGTCTACTCTTACGAGTCACGCCACGTGGAAGCCGAATTTCCACGCCTCGCTCTCATCTGGCGATTATCATAGGTCGAGTCATGATTGAAGACAAAAAAAATAGGAAGCTCTATTTGGTGCCTTATCGGAATGTCCGCCGCCGCCAAAAGCGACGACGGCATGCTGTTACCGGAAGCGATCACGGAAACCTATTGGCAATTGCATTGCCAGCATTCCCGCGCCTGGAGCCACAAAATCGAGCTGCGCCCGTTCAAGGAGACTTTCCGAACGGCGCCGGCGGCAGGGCTATTCCTCCTGGTCCCACAACACCGGAAATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 2707932-2702259 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP023669.1 Methylomonas koyamae strain LM6 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 2707931 35 72.2 35 ...C...-...T.T.T..T.T....T..A...G... ATCGTCAACCGTGCAAGCGCAGCACTCCGAGCAAT 2707861 36 97.2 38 ..............T..................... CCGCGGGTTTGGCGTAAGGTCGAGCCGCCGGAAGACTT 2707787 36 100.0 35 .................................... TTGCTGAGTTCGGCAAAGACCCGCTGCGATTTATT 2707716 36 100.0 36 .................................... GGGGTAGGGGCTTATGTCTGTGGTCGTCGATGTCGT 2707644 36 100.0 36 .................................... TAACTCCTGGTACGAGTTTCAACACGACGCCGAAAA 2707572 36 100.0 38 .................................... TGCCGTATTTAGACGTAGATGGTAATTTATATCCGGTT 2707498 36 100.0 36 .................................... GTTTTTGCCGTGAGTATTGAAAACGGAAAGCGTTTT 2707426 36 100.0 36 .................................... GACGGCTAACGCGTTTTCTGATTTTACGGTTTACGC 2707354 36 100.0 36 .................................... AATTTTATTCCGGGGCAAGATAATGTTTTTCGCCCC 2707282 36 100.0 37 .................................... CGTGCCGATTCGCGGCGTCGATGGTTTGGGTATCGCC 2707209 36 100.0 38 .................................... AGCGACGGCGCTTACAGCGTTAGTCGATTCGGCGAATT 2707135 36 100.0 36 .................................... CGCTCATCGTTGCTGCCCCGCGTTAAATCCCAGTGC 2707063 36 100.0 36 .................................... TGCCTATCTCAAGGCCGTTGCGATGTTGCCGTACCG 2706991 36 100.0 36 .................................... ATTCGGAATTGGAAGCGAAGCGGTACATACCGTGTG 2706919 36 100.0 39 .................................... CAAGCCAATGATAGCGCCGTCGTGCATAAGACTGGCAAT 2706844 36 100.0 37 .................................... TTCAATGGGATGTTTACCTCTCCACGCCCAACATCAA 2706771 36 100.0 36 .................................... CATTATTAAGGCGGCGAAGTAAGCGGAGACGCAAGG 2706699 36 100.0 37 .................................... AGGGATAGCCGTTTCCGTCGAGAACGGAAACGGGTAA 2706626 36 100.0 37 .................................... GTCCATCTCGACGCATTTCAATATCTGCATCGGATCC 2706553 36 100.0 37 .................................... CCTCTTGTCCTGATTATATCAGCATCGGTTCCTTGTT 2706480 36 100.0 38 .................................... CTCTTGATGGTGATGTAGTTTTTGGGACACTTCAAATT 2706406 36 100.0 37 .................................... CTTGCGGCGCATGGACGCCGAAGACGGACGGGTTAAA 2706333 36 100.0 35 .................................... GCGGCGGTATCTACGTTGGCGGCACCTCATTGGCC 2706262 36 100.0 36 .................................... AACAACCGAAAGCCAAACCGGCCGAAGAATCGGTTC 2706190 36 100.0 36 .................................... AGGCCTCGCATTTCGTCCCACAGCAGCGGCAGCTCG 2706118 36 100.0 35 .................................... ACTGGTTGCATGCGGAATACAACATACCCAAGCCG 2706047 36 100.0 35 .................................... GAAGGTTAAGAAAGATATGGCCGATGCCATACCCG 2705976 36 100.0 35 .................................... TCGGCTTCGCTGTAAAAGTTGCGGTAATAGTCCTG 2705905 36 100.0 36 .................................... ACAAACGGGTGGTGGATCAAGCAAAACGCATCGAGA 2705833 36 100.0 38 .................................... ACAGTCAACAACTGGCGGCGTTGTGTATGCCGCATGAG 2705759 36 100.0 36 .................................... CTCTTACGGCTACGATGTACGTGCGGCGGACGAGTG 2705687 36 100.0 37 .................................... ATCCAGCAAGTCTAAGCGTAGCGCAGACGAGGAAGAG 2705614 36 100.0 35 .................................... ATACTATGGCGAAAAAGAAATGAAAAAGTCAAACC 2705543 36 100.0 36 .................................... TGACTTTCGGCGTTCTTTAAGGTCCAACGGTTACGT 2705471 36 100.0 37 .................................... GTGGTCTAACGGCGGCGCGTGTTACACCACAAGACAT 2705398 36 100.0 36 .................................... AAAAAGCCTCAGCACGTTAAATGGGGCGAGTTTTTA 2705326 36 100.0 37 .................................... TGCTCTAAAGGTGTTGGCTATGGCGGCAGACACTAAG 2705253 36 100.0 36 .................................... TGTACCACACGTACTTTACAGTCCCCTACTCCACCA 2705181 36 100.0 35 .................................... GTCGCGATAGTTCTAATTTGCCGGCCGCAGGCTTT 2705110 36 100.0 35 .................................... TCCACAAGCATCCTGCAAAAGCGATACGCACTCTT 2705039 36 100.0 36 .................................... GCCCGGTTTCAATCGCGGCGATTGCTTCAGCATCCC 2704967 36 100.0 35 .................................... ACTCCGAAGACGGTCTAAAACCCGTCGACTTCCGC 2704896 36 100.0 36 .................................... TCGTTCGCCGGCCGCGTGGCCGGGGCCGGCCGTTAC 2704824 36 100.0 35 .................................... TCATCATTGGCTCGCTGTTCGGCTGGGTCAACGAA 2704753 36 100.0 35 .................................... CCAAGCACTCTGCAAACATAAAACGGAACCGCAGA 2704682 36 100.0 35 .................................... CTGGCGGTGCCGAATCCGCAGATCCAATTGCCGCC 2704611 36 100.0 36 .................................... GAAACCTGCCCGCAATGCAAGCTGGTAAACTAGCCA 2704539 36 100.0 36 .................................... ATGCTCCACCTGCTGAAGTAGAATTACATGTATATT 2704467 36 100.0 35 .................................... GGGAAAAGCGAATTGAAGAGGCCAGCATTCGCGCA 2704396 36 100.0 37 .................................... CACAGAAAACCAGGCGCCAGGCTTTGCAGAGAGCTTG 2704323 36 100.0 35 .................................... GGAAAACCGCCACTTGTGACCATCACGAATTAGCC 2704252 36 100.0 38 .................................... AGCGAAAACAAGCAATGCAAGAAATGCCTATGCGTTTT 2704178 36 100.0 37 .................................... GCTGGTGCGTAGGCCATTGGCAACCGAAGCCGAGCAA 2704105 36 100.0 37 .................................... AAATTGTTCAAAGTTTTTTGATGACATGTGACCTCCT 2704032 36 100.0 35 .................................... CAGTCTGCCAACACGGAAACCCTAGCGCTAGCACC 2703961 36 100.0 36 .................................... GGAATACTTGACCAGCAACCGAGCAAGGGGGGATTA 2703889 36 100.0 35 .................................... GTCTTGACGAATATACCCATGTTAATTGAGTCTCC 2703818 36 100.0 39 .................................... TCAACAAAATCTACATGGCTTCGGGCCATAGAAATTACT 2703743 36 100.0 35 .................................... CGGGGTGGCTAGCGGTCGTGGTGCGGCGTTCAAAA 2703672 36 100.0 37 .................................... CTTTCTGGACTGGCGTAATACTAACCACGCGCTCTTC 2703599 36 100.0 37 .................................... TGCATGGGCCCAAGCCTGCCAACATGCGCGTCATATT 2703526 36 100.0 36 .................................... AATACCAAACTCATTGTCCGTAGTGGCCAGCCCGGT 2703454 36 100.0 34 .................................... CGAAAACAGTTGTAGCCGATGCAAAGAAGGACAT 2703384 36 100.0 36 .................................... GCGGTGATTATGGGGCGGAAAACAAAGGAATCTCTT 2703312 36 100.0 36 .................................... CCTTTATGGCACTGACGCCGCAAGCTGGCAATCGAA 2703240 36 100.0 37 .................................... GAGGCGATCAGGTTGGCGTTGGCTTTTGCTTCGTCAT 2703167 36 100.0 38 .................................... CTAATATGCAACGGCAGAAAAAATACAAAATTACTCAA 2703093 36 100.0 36 .................................... CTAACGGATTCATTTCAATCTCCTCGCGCACGCTTT 2703021 36 100.0 37 .................................... GACCGTCCCCCAGCCAGTTTTCGGCAACGTTCGGATT 2702948 36 100.0 35 .................................... AGGTTGTATGACTGTTGTTAATTTTCCGAAAGCCA 2702877 36 100.0 38 .................................... CCTCGACGCCCTGAAAGCCCTGTTGCCTTACTACGCCG 2702803 36 100.0 36 .................................... CCGTTGATGGAGCTTTTACAATGGCAAACCAAACTT 2702731 36 100.0 37 .................................... CATTTTGCGGACACCTACAAAACCATCATCGAGCGAG 2702658 36 100.0 37 .................................... CTCAGCCTTCGGGCTCTCTGTGTTACACCGTTAATGC 2702585 36 100.0 38 .................................... ATCCGAATAGTCCGCAGCCGTCATTTTAATAGCTCAGT 2702511 36 100.0 35 .................................... CCCACACAAGAAAAAAGGCGGGGTTTCCCCCGCCT 2702440 36 100.0 37 .................................... ATTCCGTTAAATTTACCAACAAAAGAGGCAGCATAAT 2702367 36 100.0 37 .................................... CACGCCGGTAGCGGACCAAGGAACATCACACAGCAGC 2702294 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ======================================= ================== 79 36 99.6 36 GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Left flank : GCCTGGTCGACGCCGGCGAACTGAAGGCGGCCGAAGAACGCTGCCACGCCCTGAAAGGGGTTAGCGGCAACTTGGCGGCCGTGGCGCTGTTCGAAGCCGCCGCCGAGGTGGACAGCCTGCTGAAACAAAACCGATGCCCCGACCCCGGCCAATTGCAGCGAATGGACACTTTGTTGGCCGAATTGTTGGCCGAAATCGCCAATCTGCCCGCCGCCGGCCATTCCGCCGCGGCAGAGGCGAGCGTAACGGCCAAACCGCAGGCGGAAATGAACGCATTGCTGGAAAAATTGGCTGACGCCTTGGAACACGACCTGGGCGCGGCGGAGGATTTGATGGAACAAGTACGCGCAAGTCTGGCCGACAGCCATTATCAGGCTATCGTTGCCGAAATCGGCAACAAACTGGACCGCTTCGCAATCGACGAAGCCCAATCCCAACTGACCGAACTGCGCCGGCTGATCGCGCAAAGTTAGCCGATTATTTCATTGCTTTTCGTTATC # Right flank : AGCGCGGGCTGGAGGCCTTGATTGGCGCGGCCTGCGCGGGCCGTTTGCGAGGACTGCGTAAAACGGCCGGTCAACTTTAGCGGAAAAGCCTGCGCCGCGCCAATCCAAATAGCTAAGTTCCTGATTGTTAAAGAGCTGCCGGCTTGCGAGAGCTGCCAGACTTTTGCGCGGCACTGCAGCGCTCGCGTGGTGGCGGCAAGCACCGATTAACGTTCTCAGCCACCAGTTTAAACCGGTCAATTTTCGTTCCATTCTATTGTTGCCCTGCCAAGCTTTTGAAACATACACGGTAAACCGTAATAAAATCAGACCGTGGCGATAGGAGACAGGGCGACTGTACGCCAGACCCAACCAAACCCACGAGCCGGTTTTACAGTTTGAACCGGCCACATTTGAGTGGAGATCGGCCGACATTTTACTGATCTCCTCAACATCAGACGATCACCGGCTGCCGTTCCACCACTTCGAAATCCTTGCCCAAACTGACCACCGAGGGCTTC # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTTCAATGAGGCCCCGGCGGGAGGCCGGGGAATGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-14.90,-16.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,1.01 Confidence: MEDIUM] # Array family : NA //