Array 1 147774-151807 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABEIV010000001.1 Streptococcus suis strain NCTC10446, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 147774 32 100.0 34 ................................ TTTTTCAACGCTCTCACTTGAGCAACCTAGCAAC 147840 32 100.0 32 ................................ TTAAATCACAAACTCCGCCCTAATAACGTTAC 147904 32 100.0 33 ................................ TGAAAACTTGCTGTCTAGGTCTTGTTTTGTAAA 147969 32 100.0 32 ................................ GTCTGTTGCCATCTTAACTGCATTGACAAGGA 148033 32 100.0 34 ................................ ATCTGCTTTATCTGTCATAACCCCACGAACTCTA 148099 32 100.0 33 ................................ CTTGAAGCGAATATCTGTCATGCCCCAAAAACC 148164 32 100.0 33 ................................ ATCAATTAGCTCTCTCACCTGTTTACCTGTGAT 148229 32 100.0 33 ................................ AAATTGGGTAAGTGCAAATAAATTGACTTATGA 148294 32 100.0 36 ................................ ATCAGGCTGTATAGTTCCTCTAATTCATGCAACACT 148362 32 100.0 34 ................................ GTCAAACTTACGACCAGCAAGCAAGTAGAAAATA 148428 32 100.0 34 ................................ TGCACTAGTTTGAACCGAATCGTAAATCGTTAGA 148494 32 100.0 34 ................................ AAAATTAGATGTAGCAGAAGCAAAACGAAGTTTT 148560 32 100.0 35 ................................ AATATTGAGAGCTTGAAGCACACCGTCCAAGGCTT 148627 32 100.0 34 ................................ GTGTCTGCGTAACAATGTAGTTACTAAGTAACAG 148693 32 100.0 35 ................................ AAGCGACTGTTGGTGACTTGGATAAACCCTGAAAT 148760 32 100.0 33 ................................ ACTATTTCGCTAAATTTCATGTGTTCGTCATTG 148825 32 100.0 34 ................................ AATGGGTGATTTGCTTTATAGCGATTCAAACACC 148891 32 100.0 33 ................................ TTGGTATGGGTGAGTATAGCAGGGAACGATTGC 148956 32 100.0 35 ................................ TAAGTTTTCAGTAGGTGCATAAACCCTTGGCTTAA 149023 32 100.0 33 ................................ AACCATATCAGCAAGGTACATGATGGACTCTGT 149088 32 100.0 34 ................................ TTATTACCTCTACTTCGCAGAAGAGATCTGCTAG 149154 32 100.0 34 ................................ AAGCTTTAACTGCTAGGGAACTGAAGAAGTACCG 149220 32 100.0 33 ................................ TAAATCTTCTCTTGTTAACGTTGTGTTGAATAA 149285 32 100.0 37 ................................ ATCAAACGCCGTGACAACGAGGTCAAGCGAGGACAAA 149354 32 100.0 33 ................................ ATGTTGTTTAGAATCATGACCCTCTTTGCCTGC 149419 32 100.0 33 ................................ AAATTTATCCAATGGCAAGGTAAGTAAGCCTGT 149484 32 100.0 32 ................................ GCTTTTTTTGGTGAATACCAACGAACGCTCTA 149548 32 100.0 34 ................................ ACATCATCATCACCGTCAGCAATCCCACTTTACC 149614 32 100.0 35 ................................ CCCTAAAAGCTATGATTCTACCAATCCATCAGGTT 149681 32 100.0 33 ................................ TAGCAAGAATCCGAAAAGGTCACTATAACCGAG 149746 32 100.0 35 ................................ AGGTGCTTTAGTTGCAGAAAGTGGAGATACATTTG 149813 32 100.0 35 ................................ AAATAGCTATACTTTGTGGTTTGCTAGTTTAAAAC 149880 32 100.0 33 ................................ ATATACACAAAATTCAACCTATGATTTGTTATC 149945 32 100.0 34 ................................ TATCAATAATCTTCTAACAGATTTAAACATTTCA 150011 32 100.0 32 ................................ TTTAGATGAATTAAAAAATGAAATAATTTACT 150075 32 100.0 35 ................................ ATATACTGTTAAAATTAACAGTTATTCATCAGCTT 150142 32 100.0 36 ................................ AAAAAAGATGGGAACAAGTTTAGAAGCTATTTTCCG 150210 32 96.9 35 A............................... AAAAATGATAGTGAAATGTTTGATATATCCGCAAA 150277 32 100.0 35 ................................ GGTCTGGATAGGTAAACGTTTTTGAAAACGGTATT 150344 32 100.0 33 ................................ ATAAGACAAAGCCTTGATAACAGTCGAACCAAT 150409 31 96.9 36 ............-................... TTGCTGGTCGTATCAACCATAGCAACGTTCCATATC 150476 31 96.9 35 ................-............... AAGTATATGTCAGCGCTACGAGATACAAGCATAGA 150542 31 96.9 33 ................-............... TAATTGTATTACTATCCTTTATCAAAAGATTAT 150606 32 100.0 34 ................................ TTTCAGTGCTTCAATCTCTGCTGTTACGCGACCA 150672 32 100.0 34 ................................ AAGTCCGAACCGACCTTGATAATGTGACGGCTTT 150738 32 100.0 34 ................................ CTATTACTCCCGATGATTGTTCGCGAGTAATTCC 150804 32 100.0 36 ................................ ATCAGCCAGTGTCTTACCCTTCAAACGGATTTTAGC 150872 32 100.0 34 ................................ TTGGCTAAATCCAACCTTTTCGAGCATATCGATA 150938 32 100.0 33 ................................ TACTTCATTATCTAAATACCGTTTGTTGCTGGT 151003 32 100.0 35 ................................ ATAGTTGCCTTTACTATTATTTTGACAATTCTATT 151070 32 100.0 33 ................................ TATAAGTTAGCTAGTTCAACTACTGCTCCTCAA 151135 32 100.0 32 ................................ AAGAGTTTGAGCCTAAAATTACGTTATTTAAA 151199 32 100.0 34 ................................ CCTGAGGATTTGGGAAATATGTACACGGAGGATG 151265 32 100.0 33 ................................ AATCAGGTATAGCGTGTCCTTTTGGCTACGGCT 151330 32 100.0 32 ................................ AAGAGTTTGAGCCTAAAATTACGTTATTTAAA 151394 32 100.0 33 ................................ AATCAGGTATAGCGTGTCCTTTTGGCTACGGCT 151459 32 100.0 34 ................................ TAATTCGTTTATTGTAAAATTTCTTATCAGTAAA 151525 32 100.0 34 ................................ TCTAACCTATGGCAATCCATCACAGAAGGCGCCA 151591 32 100.0 34 ................................ AAAATCATCGATTGACAGAGAACACTGGTCAAGC 151657 32 96.9 23 ......................A......... AACGTACCTGCTCGGACGGACCG Deletion [151712] 151712 32 81.2 32 .......T..T....A....AC..G....... TGGACGGCACTATGGGAACACCTGGCACATCG 151776 32 68.8 0 ....T..T..TTG..TA.A...A.G....... | ========== ====== ====== ====== ================================ ===================================== ================== 62 32 98.9 34 GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Left flank : CAAAAGCTATTCGAGGCGAGTTGGATAGTTATCCTCCGTTTATGATATAGGAGCTATATTATGATGGTATTAGTGACCTATGATGTCAATACAGAAACAGTAGCTGGACGAAAGCGATTGAGAAAAGTAGCCAAGCTGTGCGTTGACTTTGGTCAACGTGTGCAACATTCTGTCTTCGAATGTTCAGTCACTCCAGCAGAATTTGTTGAAGTAAAGAATAGATTATTGGAAATCATTGACAAGGAACAGGACAGTATCCGCTTTTATATGCTAGGAAAAAACTGGCAAAATCGTGTGGAAACGATTGGGCGAGATACTAGTTATGATCCAGATCAAGGAGTCCTTCTGTTATAGATTATCTATGCGAATCGGACTTACTCATTAAATGTGAGGAGATTCGCGTGAAAAGCATATGAAAAAAAGTGAAAATAGAGTGAATTTATGGTATATTCTACATCTGTAGAAACTTTATTTTTTACAAAACAGTGTCAAAAGGCACT # Right flank : TTGTTTTTTGCTTAACACAGTATATCTGGTATGGACGTGTTCGAAGTTTCCCTCCTTTAACTCATCTCCCCCACAATTTTCTAAAATTCTTGTTTTGTCTTGCTTGCTTCATGCTATAATAGTTGTATCAGTTTTTTAAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAGTTTGTGACGGACGGTATGATTGTTGGGCTGGGGACTGGTTCGACGGCATACTATTTCGTGCAGGAGATTGGCCGTCGGGTTGCAGAAGAAGGGTTACAAATCACAGGCGTAACGACCTCTCATGCTACGGCAGAACATGCTGCGTCCCTTGGGATTCCCCTAAAAAATATCGACGAAGTCGAATATGTGGACTTAACGGTGGATGGAGCAGATGAGGTTGATGGGGACTTCAATGGGATTAAAGGCGGTGGCGCAGCGCTTCTCATGGAGAAAGTGGTAGCAGTCAATAGCAAGGACTGCATCTGGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTACACGGGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.90,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-53] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.68,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //