Array 1 3014-2802 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHI01000031.1 Lactobacillus helveticus strain IMAU10142 Scaffold31, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3013 29 100.0 32 ............................. TGGACTTCAAATTATTATCAATCAGACTCTGG 2952 29 100.0 32 ............................. AACTCCGGAGCCAGAACTTCTAACCCAACTAC 2891 29 100.0 32 ............................. TGCTCTAAATTATCGTGATATTCTTGAACATC 2830 29 96.6 0 ...........................T. | ========== ====== ====== ====== ============================= ================================ ================== 4 29 99.2 32 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : ACTAGTTAAGTAGTGATATCCCTTTTTAGCTTGATGATCAACTTGAGTTAAAGCAGCATCCCTTATAGATAGTAGCATTGTGCTTTAAGCGAATGATCTTAGGATTAGATGAGAGATAATCGCTCTTATTGAAAGCTGGAGCTTTCTTTTCTGTAGTAGAACTTTGAGACTAATTAGAGTTCTGTACTACTTGAGTATTTGATTGAGCATCGCTAACAGCATCGGCTTGAACGTGATTAGTAGAAACAATTCCTGCACCAAGCAAAACTGCCACGATAGCTGTGTTCCACTTTGTCTTTTTCAACATATATTTTCTCCTCCATAATTTTTGGGAATTCATTGGTTATTTTACTCGCGTTTTAGAAGTTTTTAAATTAGGAAGGAAAAATTTAAAATGAGTAGAAGATATAAATAAAAAAGAATAAAATAAATAGGATGAAACTGAATAAATTTTAGTTTTCATAAAATTGAAATGGCTCAATGATAAGGGATCTTTTAGT # Right flank : CAGGTGTATAAGGCATTTAAGTATCTATAGTCTAATTATTTTAGAGCATAAAAAAAGACCCGCCAAAAAATAGCGAGTCCGTGTAAGGAGAATAAGAATGAAGGAGAGGTAAATCAGCCCTCGTTTCTTAGTTTATATTAGGAGTGTTAAAATGGCAAGAACTGAACCAGAAAAAAAAGCTCAAAAAAAATATTATTTGAAAAACAAAAATATGTACAAGATTAACTCCTATCGCTCAAGAGCTAAGAATTTCATTTTAAAGTATGCAACCACTGATGAGCTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAATTTGAAGTAGCAATAACTGATTGAGTTTGTTGGTATTCTCCACGTATGTGGAGGTGATCCTTAAGAGGGCGTCAGGTC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.70,-9.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 20168-20659 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHI01000009.1 Lactobacillus helveticus strain IMAU10142 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 20168 30 100.0 35 .............................. AACACCCGCCTTTCATGCTCGACCTTGCTAATTGA 20233 30 100.0 35 .............................. TTAAGATGGTTAACTATCCAAAGCATTATTTCCAT 20298 30 100.0 36 .............................. CAATAGCCAAACACACCAGCAACAGATAGTAAGATA 20364 30 100.0 36 .............................. AATTAAGCAATTGAATCCAAACTATCTTGTGCTGCT 20430 30 100.0 36 .............................. CTACCCGTGCTACTGTAGCTTGTACCAGTCCAAAGC 20496 30 100.0 37 .............................. ACGAGTACAGATACACCTATCGACCCAAAAAACTTGT 20563 30 100.0 37 .............................. ACAAAAGAAATGTATAAGTGGCTATCAAACTTCTTTG 20630 30 96.7 0 ....................G......... | ========== ====== ====== ====== ============================== ===================================== ================== 8 30 99.6 36 GTTTTTATCTAACTTAAGAGAAATGTAAAT # Left flank : GTTTCCAAATCTAGGTCGACGAGAAGATTTGGTAAATTTTGAAGAAGTAAAAATCGTTGATGTAGAAAAAAAGGATGAAGACTTAACTGTAAATCATGGTGCGTATATACCAGTTGAAATGTCTGAAAATATCGGTCTTGAAAATGAAGGTATTGGATATAAAGGAACGCATTATTACTTAAATAAGGACTATAAACTGGTAACGATAAAAAAAGGTCAGACACAACGTCGATGGAATAAAGTTGAAGTTATATATGCTTCTGGGTTTACGGTTTATAAGAGTTACGTTGATGAAGATAATAATGTAGTGTTCTTAGTTTAAAATCTGTCGATGTCCAATAAGCAGTTTTTACCAGTAGATCGACAGATGTGATAAAGCCTTATGTAATAGTTTTTCTAGAGATTCCAATTAATTTAGACTCAAAATGATGATATGTTTTGGGAGGTCGATAGAAATCATATTACAAAGCATTGATGTATAAGACTTGGCAAGTGGAACT # Right flank : TCGCTCTCTAATAGGGGGGTTGTACATATCCTTTATTTAACTTACGAGAATATACGATATTAACCATAAAGATAGAAAGTGTGAAAGGATGAATGAATATTTAGCTAAATCTTTAGACCAATCTGAAGGAAATCATTGTGAGACGATCGTTGAACATACTAATAATTTGTTAAAGCAATATAGTTTATTAAAGCAAGCTTATCCAGATATATTTCAAAATTTTTGGCTTAGTCAAGATCGATTTAACGATATGACAAAACAGGTAGATATTCGTAATAAAGACGATTGGCGGCTTTTAGAAATTGCTTGTAGCTATCACGACTTAGGAAAAATGAACCTACGCTTTCAGAAAAAGGTAAAAGCAGGGCAGAGCTTTTGTAAAGGTGAAATTCCGCATGCATTGTTAAGTATTGCGATGCTTCCAATTGATGAATTACAGAAGCATTATACTAAAGATCAAATCATAGCATTAATTTTTGCAATAAAGTGGCACCATGAAC # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAACTTAAGAGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 2 25153-27096 **** Predicted by CRISPRDetect 2.4 *** >NZ_WCHI01000009.1 Lactobacillus helveticus strain IMAU10142 Scaffold9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 25153 30 100.0 35 .............................. AGTATTGCATTGGCTGCTAATGACATTCCACACGG 25218 30 100.0 35 .............................. TTAAGAACTCCCCAACCCTTTTGGAGCATTACTGG 25283 30 100.0 36 .............................. TGTGGACAGTCATTAACAATGCCATTGGCGGTGCTG 25349 30 100.0 36 .............................. TATGATGTTAATGCTTTAATTGGATTACGGGAACGA 25415 30 100.0 35 .............................. ATATAAAATGGTTGAGTTAATAAAACAAAAGCTTC 25480 30 100.0 36 .............................. TAAGTTCCAGCCTCTAAAAATATTGTTGTGAGTTTG 25546 30 100.0 36 .............................. AAAAACTTAGCAAAAGTATCTGCTTGTTCTGCAACA 25612 30 100.0 36 .............................. TACCATTATGATATTAAACAAGCAGATCGGATTTTA 25678 30 100.0 36 .............................. ACCAATGGTGCATTATTGCCAAAGGGAGGCGAATAG 25744 30 100.0 35 .............................. CGTGATAAGCGTCCAAAGACGTTGTGGGAACTTGC 25809 30 100.0 36 .............................. CTATATGCAATTAAACTTGTGCCTTGATGGATAGTC 25875 30 100.0 36 .............................. GAAAAGGACATTGTGCAACCAGAAGCGCCAGCTAAG 25941 30 100.0 37 .............................. TAGATACAGAAGCAGAGTGGTTCGCATAGAAATAGCC 26008 30 100.0 36 .............................. CTACTAATGCTTGGGATAAAATGCTTATTGCTTTTT 26074 30 100.0 35 .............................. GCCAAACTTGCAATCTTGCGTAACTCGTCAACAGT 26139 30 100.0 37 .............................. TTGGGTAAAAGATCCTAACGGTAACTTATACAAGCTC 26206 30 100.0 37 .............................. TTCACAAAAGTTTCTACAGGTGTGGCGTTATAGCTAG 26273 30 100.0 36 .............................. CTTATATTGGCTATGGATTAACTGAAACTGAATACC 26339 30 100.0 36 .............................. CTTAACTACGGGATGCTGAAAGAGCGATCCTACGGT 26405 30 100.0 37 .............................. GAGTATAGCCCTACCTTATATCCAGCATCATGACAAA 26472 30 100.0 37 .............................. ATAATAATGGCGTAGTTAGTAGCTTGAGTTACTGTCA 26539 30 100.0 36 .............................. GCAAATCTACGTGTATATCTAAGACACCGCACAAAA 26605 30 100.0 35 .............................. CGGAATTATTAATATTCCATTGACCAATACAGGTA 26670 30 100.0 37 .............................. CAAATTCTAGAGTGCCACGAGGGCCAGTTTTTAAATA 26737 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 26802 30 100.0 35 .............................. CTTGAAATTGTGTTGGATGCACTTCACCGTGCTTC 26867 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 26933 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 27001 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 27067 30 76.7 0 .A......C...........G..AA...TT | ========== ====== ====== ====== ============================== ====================================== ================== 30 30 98.3 36 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACGATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGATAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCCTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGGCCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //