Array 1 163753-162257 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXZ01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 50-4424 NODE_1_length_602475_cov_2.40037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 163752 29 100.0 32 ............................. TTACTTGATGTTGCCATAGAAGAATCTGACCC 163691 29 100.0 32 ............................. ACGGGTATTCCAGATTAATTCCGGTCGGTGTT 163630 29 100.0 32 ............................. TCATCCGTGTTGACAATAATACTGGTTATACC 163569 29 100.0 32 ............................. TACCCGCCTTTTATTTCGCTATATCAAAGGGG 163508 29 100.0 32 ............................. GCCGCGATTTGCTGCGCCTCCGGTACGGCAAC 163447 29 100.0 32 ............................. AAAATCACCAGATCCGGGCGCAAGGGCGCCGC 163386 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 163325 29 100.0 32 ............................. TTCTTTACAAAGAAGAGGGCTACCCGGTTGCG 163264 29 100.0 32 ............................. TTGTGACTTTGATAGTGATTGAAAGCACCTGT 163203 29 100.0 32 ............................. TGAGTTGCGCTTCATACGCTCTTTTTGCTCTG 163142 29 100.0 32 ............................. ATGCGTAGTCCAGCAGCTGCGCGGCGGCGTTT 163081 29 100.0 32 ............................. CCCATCCCCAGAATTTACCGATATGCTCCACA 163020 29 100.0 33 ............................. GGCCTAGGTGATCCGTTGGCGTGGAACGTTAGC 162958 29 100.0 32 ............................. CAACTGCGACACATACCTCTCACACCATCACT 162897 29 100.0 32 ............................. AAAAAAGGGAAAAAGGGGGGGCTGTTTCTCCT 162836 29 100.0 32 ............................. CCATCCGAAAAAGCCGCGTTTACGCCGATGTT 162775 29 100.0 32 ............................. GTTTATAAAAAACACTCGCAAACAAGATGATT 162714 29 100.0 32 ............................. CTCTCAAATGCCTGCCACATCACGCGCGACGC 162653 29 100.0 32 ............................. CTGGGAACCCACTTCATCGGAGCGGCTTCACC 162592 29 100.0 33 ............................. CCGTATTGAGGCGCTATTCCGTGCTGTGCCGCC 162530 29 100.0 32 ............................. GCTACTTACAGAGAACTACTGGCAAAAGAAAC 162469 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACAACGCAATG 162408 29 100.0 32 ............................. TCCACGTCGCCCGCCATCAGGTTCGCCAGCTC 162347 29 89.7 32 ............T....C....G...... AACTGGTACACCCGCCTGACGTTTGTTCAGCT 162286 29 100.0 0 ............................. | A [162259] ========== ====== ====== ====== ============================= ================================= ================== 25 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCAGGCAGCGCCTTGTCTATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 181379-180009 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYXZ01000001.1 Salmonella enterica subsp. enterica serovar Meleagridis strain 50-4424 NODE_1_length_602475_cov_2.40037, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 181378 29 100.0 32 ............................. CCTGCGTATATCTGGACGGAAACGAACTGGTT 181317 29 100.0 32 ............................. ACACCCCGACTGTAGATGAAATTCCCGTCGTT 181256 29 100.0 32 ............................. CTTACCGCAGAACCGTACATGCGGCTCATTTC 181195 29 100.0 32 ............................. GTAATTCCTCGCCGTAAACGTAACGGAAATAC 181134 29 100.0 32 ............................. ATCAACGATGCCAAACTCGGTGGCGATTGGCA 181073 29 100.0 32 ............................. GCCGCGAAATCGCAGCGCCGCATGACGACTCT 181012 29 100.0 32 ............................. TAATATTCTTATCCAATATTTTATTGCTTGAG 180951 29 100.0 32 ............................. TAGATAGTGAACTTTATGAAGAAGTAATGAAG 180890 29 100.0 32 ............................. GGGATGTCACAATGATAAGGCGTTTTCCGTTA 180829 29 100.0 32 ............................. GCGGATAATTCAACAGCGTTGGGCTATAGCAC 180768 29 100.0 32 ............................. GTTGAAATCTTGGCCGCAGCGGAGGAAATGGG 180707 29 100.0 32 ............................. CGCAATTACACTGACAATTCGTCAGCGCAAAC 180646 29 100.0 32 ............................. AAATTTGGCTTGATGCCGCAAACAAAGAACTT 180585 29 100.0 32 ............................. AACTGCTTAAATCAAAAGGACTTCACTAATGA 180524 29 100.0 32 ............................. TCGCGGATTTTCTTAAACGCAGCAATAATATT 180463 29 100.0 32 ............................. AGTTCAGTCCAGTTAACGCTGAACGGCGAACC 180402 29 100.0 32 ............................. ATCGTTGTCGTTCGTGTTGCTGAGGGTGCGAA 180341 29 100.0 32 ............................. GGGCCCCCACGATTTAGCCTTTGACAATTATA 180280 29 100.0 32 ............................. GAAAGCTACGACTTACCAGACTGAAGCCATAA 180219 29 100.0 32 ............................. AACATCGTCGCCAGGCGTTTTTGCATGTCGTC 180158 29 100.0 32 ............................. TAACCATCGTGACGTGTGAAGTTGCCGCCCAG 180097 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 180036 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 23 29 99.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTAGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //