Array 1 1740295-1739534 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014577.1 Burkholderia sp. RPE67 chromosome 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1740294 28 100.0 33 ............................ CTGACGCCCTCATACGGCCCGCCAGCGGGCTGC 1740233 28 100.0 33 ............................ CCTTTATGACGGCCCGCTTTCGTGATCTTCTTC 1740172 28 100.0 33 ............................ CACGCTGGGCACGCACGTAAAGAGCATTTCGCT 1740111 28 100.0 33 ............................ CGGCGCGCCGTTGGCCATGCCGATCCTCCAGCG 1740050 28 100.0 33 ............................ GTCGTTCATAAAGTCGGCGTCCGGGGTCGAGCC 1739989 28 100.0 33 ............................ CGCATCGCCGCTTGGGACCGCGCGCCGCATGGT 1739928 28 96.4 33 ............C............... TCCGTGAAGCTGTACCTGCTCGAATACCCATTC 1739867 28 96.4 33 .........T.................. GCACTTGCGCGCGCTACGGCATAGGTCTTGAAT 1739806 28 96.4 33 ...........................T CCCAAGACAGAGGGCGGTACACGGAGCCGTCTA 1739745 28 92.9 33 ........T.....G............. CTTGTGTAGCTCTTCCATCGTCATCACCTCCAG 1739684 28 92.9 33 ............C.C............. CACCGAGATCGACGAACGGCTCACGCGCTGCAA 1739623 28 92.9 33 ...........C..C............. TTTGCCGTTCAGAATGGGCGACTGAGACTGCCC 1739562 28 89.3 0 .............AC..........C.. | T [1739536] ========== ====== ====== ====== ============================ ================================= ================== 13 28 96.7 33 GGTTCCTCCGCGTGTGCGGAGATAGACC # Left flank : TGCCGGCAGCGGACCTGCTCAACGATCGCGTTGTCCCGTTCTTCGACGGCTTCGGCATCCCGCTGCTACGCGTGCTGACCGACCGCGGCACCGAATACTGCGGCAACCCCGAGCATCACGAATATGAGTTGTACCTGGCTGTGGAAGACATCGACCATACCCGAACAAAGGCCAAGTCGCCGCAAACCAACGGGATCGTCGAGCGACTACACAAGACCATGCTCAACGAGTTCTACCGGATTGCCTTCCGCAAAAAGATCTACGAATCGATTGCCACCTTGCAGACGGACCTTGATGCGTGGCTCGACCAGTACAACAATGAACGGGAGCATCAGGGACGGTGGTGTTACGGCAAGACGCCGATGCGCACTTTCCTCGATTCGCTGGAGGTAGCCAAGGAGAAACTCATTCCCCATTGATCGCCTCCCCTCTATCGGCCCGACTACCTGTCAGATCGAGTCCCGGCTAATACAGTTAATGCTTTCGATGATGTCGCGCGG # Right flank : CCGACGACTAGCACCTCACCCCCCAACCCCCACCCGCTCCCCCCCACCCCCCACCGCCCGCGCCCTTCTCCCACCCGCCACAAAATAATCCGTACTCACCCTCTCCAACCCCGCCACTCCCCGAATCCGATCCGCGATCTTCTCCGCCAACATAATCGTCGGCGCATTGAGATTGCCGGTCGTGATCTGCGGCATGATCGACGCATCCACGACGCGCAAGCCTTCCATCCCGTGCACGCGTCCTTCGCCATCGACGACGGCCATATCGTCATAACCCATCTTGCAGGAACAGGAAGGATGAAAGGCCGTCTCCGCTTTCGCGCGCACGAACGCATCGAGCTCGGCATCGCTCTTGAGATCATCGGAAGGATGCAGCTCGCGCCCGCGATACCGCGCCAAAGCCGGCTGCCGCATGATCTCGCGCGTGATGCGAATCGCATCGCGGAACTCGCGCCAGTCCAATGTATCGGCCATGTAGTTGAAAAGAATGCTGGGATGCG # Questionable array : NO Score: 5.87 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTTCCTCCGCGTGTGCGGAGATAGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 1741540-1741689 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014577.1 Burkholderia sp. RPE67 chromosome 2, complete sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1741540 28 100.0 33 ............................ GTCACGCGCTTGTCGAGCTGCGCAATGTGATCG 1741601 28 100.0 33 ............................ CCGCCGCCGGCCTGCACGGAACTACTCTTCGCG 1741662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 3 28 100.0 34 GGTCTATCTCCGCACACGCGGAGGAACC # Left flank : GCCCTCAGGCGCTTCGACATGGTCTCCAGATCGTGGCGCAACCAGATGCTACGGACGCCCTGGGGCGAAACGGACAGCGCATGTCGTTTGAGGACTTCGTTGGCGATACGGATCTGACCGTAGGCTGGCAATTCAAGGGCCAGCTCGACAACGGCGGCCTCGATCTGCGGATCTACACGGTTCTTGAGCAACGGCCGGCGGTGGGAAATCTCCTGCAGCGCAGCCTCACCGCCTCGATCGTACAGTTCCTTAAATCGGTAGAAGCTGTCGCGCGAGTAACCCATCACGCGACAGGCTTGGCTGACGTTGCCTAGTTGCCGGGCCAGCTCAAGTATGCCGACCTTGGCACGAATTACCTTCTGCTCCTGAGTCATGGCGGACTCCTTGCTGTTCGCGGCGCGCATTGCCGCTACGGGCTACGCCCTCCGCGCCAACGCGCGCCAGCACGAGAAACCAACCACTGTCAGATTTAGTCTAGTCCACTGCACATTAACGGCAAA # Right flank : CTCTCCCTCACAACCCCATGACAGAAAAGGCAAATACCCCATTAACATCCAATAAAGCATCCAAATTTTCAAAGAACGAAACCACCGCCACCTACCCCGTCATCATCCGCCTGACGACATACATCCCATCCACCTCCACAAGCTCTCTCGGCGGCGCACCGAGATGCGAGATACCGATCCCCAGAACCGCATCCAGATCCCGCCACACCATCACCACGCTGCCTCGCGGCTCATGCCCGTGCCAGTCGGCAAGCACCGACCACGTCCGTTCCCGCACGCCCTTGTTCATGCGCGGCGCGACATACAACCCCGCCGATACTTCGAGCATCACCGATCCGAGAAATCCCCGAAACCGGTCCGCGACATCACTCGTCACCACGACGACCAGCGCCATCGCCCGCCTCCCGCTTCTCATCGACACGCAGTACCTGCTTCACGCGATCGATCATCGCGGGAATGACCGCTTTCTTGCGAAACACCTGCGCCGCCTCGCGCCGCAC # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGTCTATCTCCGCACACGCGGAGGAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA // Array 1 504408-505287 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014576.1 Burkholderia sp. RPE67 chromosome 1, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 504408 28 89.3 33 ..........T..GG............. GCGTCGAGCTGTTCCGTTTTTCTTCAAGATCGG 504469 28 89.3 33 .............GG..........C.. GATGATGACGCCGCCGTTGCGAATCTCGACCAT 504530 28 92.9 33 ..........A..............C.. CGAGCCCGCGACCGCCGAGCGCTGGCGTTCGCT 504591 28 92.9 33 ..........A..............A.. CCGATAGTTTCGAGGCAATTGGCCGGCTCGTCG 504652 28 92.9 33 ..........A..............A.. GCACTATCAAGTCGCCGCCGACGCCATGCAAGA 504713 28 92.9 33 .............G...........A.. CCTCTTCGCGCGCTTTCTGAACAAGTGCACGAG 504774 28 92.9 33 .............G...........A.. CACCATCCGCCGCCTGCTGAATTTGTGTCTCGA 504835 28 92.9 33 .............GG............. CGTCATCAAACGCAATGCGGATGGCTTGTACGC 504896 28 89.3 33 .............G.........G.A.. CGCCTGTGTCGCGCTGCCTTGCGCGGCTTGCGA 504957 28 100.0 33 ............................ CAAGCGCTGCGAGATCGCCGGCATTCGCTTCGA 505018 28 100.0 33 ............................ GATGACCGTCAGCACGATCATGGGTAAGGGTTC 505079 28 92.9 33 .............GG............. GGCTTGACCGTAGTTCGCGCTCTGTGAGGACTG 505140 28 92.9 33 .............GT............. GTTTCCGGCCCCGTTCGGCTATGGGCGCATCGC 505201 28 100.0 33 ............................ CCCGCGCATCGAAGTGCGCATTCGGCCGATGCA 505262 26 82.1 0 ...........--.T.........CC.. | ========== ====== ====== ====== ============================ ================================= ================== 15 28 92.9 33 GTTTCCTCCGCGTACGCGGAGATAGGCC # Left flank : GTGAGTCCGCAACAGATCGCGGATGTGATCGGCATTGCGCCTCGCTTGCCCGATGGCTCGGATGCGACTGCGCCGAGGGCGTCGGGGACGTTGAAGGCCCATTACGCGCCGAGGACGCCGCTCGTGCTGCTGCCGTTTTCGGCGATGGAACCGCTGCTTCGTCGTGATGGCGACAGGAAAATCGCGCTGGTGGCGCGGGCTTCGAGCGCGGGGGAGTGGGCGCGTGCCTCGCATGTTCACTTCGTGGCGGCGCCGGAAGATCCGCAGTCTTATGCTCGGGATCTTTATGGTTTGCTGCGGGCGCTCGATCGGGCGAATGTGGAGCGGATTCTGATCGAGAAGCTGCCGGAGACGGTGGAGTGGATTGCGGTGAATGACAGGTTGGGACGGGCGGCGGCGGCGTTTGAGGCTGAGGAGTGATTCGCTCTGCGGGTTTTGGGGTGAATGTGAAGATCGGTTGTCGGGATTCCGCTTTTGGAACAGTTGGTTATGATCTAGGG # Right flank : CCCCGCCCGACGATTGGGCTCGCCCAACCTCCGCGCAAATCCTCCGCCTCGTAACGGAGACCTCCAAAAAACAAAACCGCCCGGACGATCCCTCATCCGGGCGGTTTCCCCATCCTCAAAGAGAATCGCTTACTTCCCCAACCCCGACTTCGCCACCACCTGTTCCGCCGCTTGCGCATACAACGCGCCCAGATGCGTCGTCGGATGCACGGTATCGGCGTACATGTAGGTCTGATCCGCGCCTGCCACAGTCAAAGTCTCCGGCGAGCAAAACAGGGAAGTCGCGAAAGCGGCCGGGTTGGGTTCGCCGAACTTCTGCGCCGCCGCCGCCATCGCCTGCAGATTACAGGCCGTGCCGGTATTCGACACCGTGAATCCGAACTGGCCAAAATTCGCAGTGACTTTGGCAAGCACCGGCACGATGTCGAGATAGATCACTTTCGACATCAGCCCCGCTTGCGTCAGCGCCCCGGCAAGCGCCTGGTTGAAGCCGAGCGATG # Questionable array : NO Score: 5.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.31, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCTCCGCGTACGCGGAGATAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.60,-10.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [8-8] Score: 0/0.41 # AT richness analysis in flanks prediction: F [53.3-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 2 703733-702606 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP014576.1 Burkholderia sp. RPE67 chromosome 1, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 703732 28 100.0 33 ............................ CGCGGTGCTCACGGGACACGTCGGCAAGGAAGC 703671 28 100.0 33 ............................ TATCTGACGCCCGCCTGGACCGCGATCTTCGCG 703610 28 100.0 33 ............................ GCACCATGACCGCATTGTCCACCTCGTCCAGAG 703549 28 100.0 33 ............................ GGCGTCGCGCTCGATACGCGGGCGGGCGAGGCG 703488 28 100.0 33 ............................ TTTGTACGATGGCTTGCAGAGCCCCGATGACGT 703427 28 100.0 33 ............................ GGCAGAGTGAGGGACATTCAGGCGGACCAGACC 703366 28 100.0 34 ............................ GTCGTTTTTCCTGCGCGGACGGGAAGGCGATTTC 703304 28 100.0 33 ............................ GCGTGGAGTGATCGATGAATAAGCAGCACTTGA 703243 28 100.0 33 ............................ CAGCGTGTGGAATCTCGGCCAATCGTGGAGCGA 703182 28 96.4 33 .............A.............. CGATTATCGGAAATATTGTGAGTTAGCCGCTTG 703121 28 96.4 33 .........................G.. GTTGACGGTCTTCATCGACGCCGGTGCGATCGC 703060 28 96.4 33 .........................G.. CTGGACAGGGAGACTTGTTCGCGAAATAAAAAA 702999 28 96.4 33 .........................G.. TTGTTCACGACTTCGTGTTCCTCTCGGTTGTCG 702938 28 89.3 33 .C........G..............G.. CGCGAGCGATGAAGAATTGCTGAATCTCGCGCC 702877 28 92.9 33 .T.......................G.. CGCGCATCGTCAGCACGCCCAAGAGCCAGTGAT 702816 28 92.9 33 .T.......................G.. CCCATCGTCGCGGGATGCCGGCAGATTCGTGAA 702755 28 92.9 33 .T.......................G.. CTCGGCACTTAACGCCACGATGCGCGACTGCGC 702694 28 92.9 33 .T.......................G.. CTCGCGGCGAAGGGTCGTCTCGCTGACTCCTTG 702633 28 85.7 0 .T.......A.C...........T.... | ========== ====== ====== ====== ============================ ================================== ================== 19 28 96.4 33 GATTCCTCCGCGTGCGCGGAGATAGACC # Left flank : TTTCGGGGTTGCCGCGCTCATCGCCCGCTCTTGTAGCGAGCACGCGTTTGTGTTTTAGTGGCCCGTTTTCAGACTTGCCGGAGCGTTATGACCTTGCATCGATTTGCCTTCTTCTGCGCGGCGCTGTCGGGCGCGGCCGCCCTTGCAGCATGCAGTTCGACGAGCGAGCCGGAACTGCGCGCTTCAAAGCCCGTGATTCACGTTTCGTCGGCGCGGGCGGCGTCGGATATATCGAGTTGTCTGCAGCGAATGATTCCATCGGCGCAAGCAAGACGCGATCAAGGCTCGACGGAGTTGATGGTCGGATCGAACGCATGGCTCGTCACGCTGACGCCTTCGGTGTATGGATCGGTGGTGAAGGTGCAGCAGTCATCGAGCGACGATGGTGGCGTGCCGGAGCCGGAGCTTCGGTTTGATATTGCGAGGTGTACGACTTGAGGGGTGTTTTCTAGGATGGGTTGGGTGATTTGGTGTTTGGGATCATGAGGTTATGATCTAGG # Right flank : CTAGGTGATCTGTTCGCCCCGCTTAGTGAGCTCGCTTCCTCCGCCGCCCCCCCGCCGGAGCCCAAAAACAAAAACCCCGCAAGCCTTACGACTTGCGGGGTTTTCAGATTTTGGCGGAGAGGGTGGGATTCGAACCCACGGTACGGGAAAACCGTACGCCTGATTTCGAGTCAGGTACATTCGACCACTCTGCCACCTCTCCGGCTACCAGTTCATTTGACAACTTACTGGCCTTCGTGAGCCGGTCGTTGCTCAACGAAGAACGAAAGTATATCGAACTCTTCCGACCTTTCCAAGCCCCTTTTTGCAAATAGGTGTCAAACGGAAGCGGCGACTTCGATCCGTTCCGCACCGCGCATGTACGGGCGCAACGCGGCGGGAATCGTCACCGAACCGTCCGCGTTCTGGAAGTTCTCCAGCACCGCGACGAGCGTGCGCCCGACCGCCAGCCCCGAGCCGTTCAGCGTATGCACGAACTCCGGCTTGCCCTGCGCGTTGCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTCCTCCGCGTGCGCGGAGATAGACC # Alternate repeat : GTTTCCTCCGCGTGCGCGGAGATAGGCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-10.00,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [30.0-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //