Array 1 321815-321187 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXD01000001.1 Campylobacter fetus subsp. testudinum strain CF78.2 contig00001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ========================================= ================== 321814 30 100.0 36 .............................. TGGCGTCGGCTGTTTTTATAAAAGAGCTAGTTAGTG 321748 30 100.0 35 .............................. TAGCTGTAGTTGGTCTAGTAACTATACCGCCGTCT 321683 30 100.0 35 .............................. TAGCGCATAAGCTTAGCATATAAGATGCCGTATAA 321618 30 100.0 36 .............................. AACGCCTTTATTTGTTCCTCGTTTGGCTCTGCGTTT 321552 30 100.0 36 .............................. CTTCTAGGGTTGTAGAAGGTGGAGGCGGTGGATTAC 321486 30 100.0 36 .............................. TTTGTAAGCTTGTTTAACTCTGTAGATGCAAATCCA 321420 30 100.0 41 .............................. TTTGCGTTTTCGACCATGGCGATTAGTCTATCTGTATCTCG 321349 30 96.7 35 ...............G.............. TAACTTCGTCTCTTGCATATCCTGCAAAAAACATA 321284 30 90.0 38 ......................A..A...T AGCTTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 321216 30 76.7 0 ..........C....AGC....A..A...T | ========== ====== ====== ====== ============================== ========================================= ================== 10 30 96.3 37 GTTTGCTAATGACAATATTTGTGTTGAAAC # Left flank : TATTTGTGTTGAAACCTTAGTGCAGTTACTTGCTTATACTGCTCATTTAC # Right flank : CACATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTGTAAAGATGAAAAATACAAGCCCATTAAGCAAAGATGAAGTAGTTAAGCACATAGACAAAACTGGAGTGGAGAGAGTTTGGAAAAAGAGCAATACACATATTTATGAAAAGCACGACACAGAGCCAAAGGATGTTGTAAAGGCTTTAAACTCTATAAATACAATGGCTAAAAATAAGGATAATAAATATATAAACGCCTTTAGCGATAATGGGTATTTTATAGTTTTTAATGGCAATGAGATAGTGACTTGTTTTAAACATAAAGATGGTAATAAAGCTACTTTTAATTATTTCAAAAACGCTTCAATATA # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 35-1379 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXD01000015.1 Campylobacter fetus subsp. testudinum strain CF78.2 contig00015, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 35 29 96.6 36 ...............G............. CTCTATCATTTTAAATTTCCTTTTTTTCTTTATTCT 100 29 96.6 37 ...............G............. CTAATATCGGCTGGGTTTATAATAGCCCCATTGCAAC 166 29 96.6 36 ...............G............. CTAGCCTCGTAAAATAGCCTATCGCTCGCTTTTCTG 231 29 96.6 37 ...............G............. CAGTATAGATTTAAAACAAGCAAATTTGAAATTGGAA 297 29 96.6 36 ...............G............. CATTTGAACTACAGGTACATTTATAACATCAAATAA 362 29 96.6 38 ...............G............. CACTGTCAAGCACGACTATAAAAAGAGCTTTGATATAG 429 29 96.6 37 ...............G............. CTTTGGAGTTTTAAACAGAGATTTAGTATCTCCATAC 495 29 100.0 37 ............................. CAATTGATATATGCAAATATATCTCTATTGTAAAGCC 561 29 100.0 36 ............................. CGGTGTTGAAACGTCTATTTACTTTTTAAAGGATGA 626 29 100.0 37 ............................. CAAACACTACACCACCAATTACCCCTAATAACACTCT 692 29 100.0 38 ............................. CTTGGAAAACTCCTCCGTCTTAAGCTTTACTTGTGCTT 759 29 100.0 36 ............................. CACTTTATTCATTTATTTATCCTTTATTTTTTTTAC 824 29 100.0 37 ............................. CTATTTAGGGAGAATAACATCATTTGCCGGATTTACT 890 29 100.0 37 ............................. CACCTAAACAAGAAATTATATCTCCTAATATTCAAAA 956 29 100.0 37 ............................. CAAGTAAGGATTAATTTTGTCTGATAGTTTTGTTAAT 1022 29 100.0 36 ............................. CTATCTTTTGCATTTTGTATATTAGGCGCAGGTTGA 1087 29 100.0 36 ............................. TATATGACCCTTAGCTACATAATTTTTATTAAGCTC 1152 29 100.0 37 ............................. CAAAAGAAAATATTAGCACTGATAAGGAGTTGATTGA 1218 29 100.0 37 ............................. TATATTATAAATAGGCAGAAACAAGAATTAGAGAGCT 1284 29 93.1 38 ......................A..A... TAGCTTTTTTGAAAGCTGTTTCTACTGCTAAAGTAACA 1351 29 75.9 0 .......G..A....AGC....A..A... | ========== ====== ====== ====== ============================= ====================================== ================== 21 29 97.4 37 GTTTGCTAATGACAATATTTGTGTTGAAA # Left flank : TAGATTGATATTTGACGGGAAAAATCTAAGCACAG # Right flank : ATCATATAGAGCTCCAAAGTAGCAACATTCAAAACGCTAAAAATGTAAGTGAGAAAAAAGCAGCTTCTGCGTGGAGAAGTGAGCCTTTTTATGGTAAAATACTTCCAGCAAACTTTGGGCTTCCGCCGTATCATTTTCGTTGTAGAACTGAGCTAGTACCAGTATGGATAGATGAAGAAGAGATCGACGGTAAAATTACTAAAAATACATCTGCTAAAGCAGAAGATGAGCTTTTTAGACATATTGATAGTATGGGTTATGAAAAAGTTGCTAAAGCAGATATCTATACGCACGGACAAAGCGGATACATTAAACCCAGTAAAATAGAACTGATATCTGCTATGAATAATATTAGCAACCTTAAAACTAGTATTAACAACCCTATAAGGCAAGTTGCATTAAGTGGAAAAATTATCATCATATATCAAGATGAGAGAATTTGGACGGTTATTAAAAAAAATAGCGAAAAACAAGCAAAAGAGTACTTTAAAAACAACACG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.97, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTAATGACAATATTTGTGTTGAAA # Alternate repeat : GTTTGCTAATGACAAGATTTGTGTTGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 1 3444-3998 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXD01000023.1 Campylobacter fetus subsp. testudinum strain CF78.2 contig00024, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 3444 29 100.0 37 ............................. AATAAGAGGATTGTCTGAAAGATTTGGGGATGAGCTA 3510 29 100.0 36 ............................. GCGTAGTTGCTTTGGTATTTTAGCTTATCTAAATTG 3575 29 100.0 37 ............................. TAAATTTTTATATACTCTTTGGGGTGATTTAAAATTA 3641 29 100.0 36 ............................. ATACGATATCAACCGGCAAAACCAATCTATTTGTTA 3706 29 100.0 37 ............................. TTCTATTTCCTTTTTCAATAATCTTGTTTTGATATCG 3772 29 100.0 37 ............................. GGTAGAAACAAAGCTACCTTATTACGTTGGATTTTAG 3838 29 100.0 37 ............................. GCTTGGCGACAAATATGAGTACGAAACAAAGGGACTG 3904 29 100.0 37 ............................. GAATTTCGGATCTAAAACACCAATAGCTCCTCCAAAG 3970 29 96.6 0 .............C............... | ========== ====== ====== ====== ============================= ===================================== ================== 9 29 99.6 37 TTTCAACACAAATATTGTCATTAGCAAAC # Left flank : AAAACTTTATAGAAACTTTGGTATAGTTGATTTCTAGCTTCATAAGTTTATGGTTTCTTTTTTGGCTATCTTTAACTCGTCGTCGTTTAGATGTTTTAGACTATCTAGTATCTCGTCGCTCTCTTTTTTATCGCAGTAACTAAGCGTAGTTAGCCTGTATGATAGCGAACCTTTGGTTTCTTTTAATTTTTGATCTAATGCATTTCTGATAAATTCAGCCATAGTTGTTTTGCTATTTTTTACGATTTGATTTAATTGTGCAAATGTGTCATCATCTAACTTCAAGCAGTAACTTTTCATAGTTTATCCTTTTTATTTTATTATATACTATATATACTTATATATATCTTATATAAATAACCTCTTGCCTAAGTTTTCAAAATTATATTTTTTACTATTTTAATTTACCATTTGAAAAATAGTTTAATAAATTTCAGCTTTTTTATAAAGTGTATTTTCAAGTTGGTTATTTAGAAGTGGTAGAATAGGCGTTCGACAAG # Right flank : CTAAAAAATGAAAGTGAATACCAAACATTCGCATT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTTCAACACAAATATTGTCATTAGCAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.41%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.68,0 Confidence: HIGH] # Array family : NA // Array 1 277-50 **** Predicted by CRISPRDetect 2.4 *** >NZ_LFXD01000049.1 Campylobacter fetus subsp. testudinum strain CF78.2 contig00051, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== =================================== ================== 276 31 100.0 34 ............................... TCTTTTTTTAATACGACTAGCTATCAAGTCAGCT 211 31 100.0 34 ............................... TTATACGAGAAGAATAATACTCTCTTTCTTCCCA 146 31 100.0 35 ............................... CCGGATGAGTTAGACGCCCTAGCTATGCTTTTTTA 80 31 96.8 0 ..............................T | ========== ====== ====== ====== =============================== =================================== ================== 4 31 99.2 35 GTTTCAACACAAATCTTGTCATTAGCAAACC # Left flank : | # Right flank : TATCTAACCTCCTTTTGTTTTTCTTGCCTCATATTGTTTCAACACAAATC # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACACAAATCTTGTCATTAGCAAACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA //