Array 1 1272-1121 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJI01000665.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM214, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1271 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 1210 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 1149 29 86.2 0 ......................AK.C.A. | ========== ====== ====== ====== ============================= ================================ ================== 3 29 94.3 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TATATAGTTTTAG # Right flank : CACGAAAAATTATTTACTGTCGTTGCTCACGGTTTATCCCCGCTGGCGCGGGGAACACTGTAACAGTCCGTCGTTAATCAGCGCGGTGGGAGGTTTATCCCCGCTGGCGCGGGGAACACACTAAAACTATATATTTGTTCTAAAAGCCCTTTTTTACTACATAACAAACTACCAACGGTAAGATAACAATTCCTTATTATTAAAGAACATTCAACTTATTGATTTTCAACAGGAAGAAAAGAAACCAAACGCAGTCCATCCAAATCTACCGGAATACGTCTGTTTTCACCCCAGGTCTGGAACTCAAAACCAGACTCAGTATTTGTTGCCCAGGCCATTACTACGTTTCCGACTCCGCCAAGCTGTGTGATCTGTTGCCAAATCATTTCCCGAATACGCTTCGAGGTATCGCCAACATAAACACCTGCACGAACCTCGAGTAACCAGACGGCAAGACGTCCCCGCAGGCGCGGCGGTACGTTTTCCGTGACCACAACCAC # Questionable array : NO Score: 3.88 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:-1.5, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [3,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [46.7-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 30-1017 **** Predicted by CRISPRDetect 2.4 *** >NZ_CDJI01000114.1 Salmonella enterica subsp. enterica serovar Typhimurium strain STM214, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 30 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 91 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 152 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 213 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 274 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 336 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 439 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 500 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 561 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 622 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 683 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 744 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 805 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 866 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 927 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 988 29 96.6 0 A............................ | A [1014] ========== ====== ====== ====== ============================= ========================================================================== ================== 16 29 99.6 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CCCCGAATGTGTTTGCCTCGCCCGCTGCCG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.18, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [15.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //