Array 1 16014-18132 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWT010000042.1 Clostridium saccharobutylicum strain DJ007 NODE_42_length_30324_cov_26.563329, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 16014 30 100.0 36 .............................. CTCAACTGACTAAATGTAAAATCAGAATACCTTGAA 16080 30 100.0 34 .............................. TGATGAAATATGCACTAAGAGGATTTGATTGATA 16144 30 100.0 36 .............................. ATAACAACTAAAGTCTGATGTTCTTTACCCAAGTCA 16210 30 100.0 36 .............................. TTGATGGAACAATGGGCAATTGATTTAGGATTAACC 16276 30 100.0 35 .............................. AGTATAAATACGTTTCATTCTAATAATAGTTACGT 16341 30 100.0 37 .............................. GATATTTTAATATTTGCGATTCTTATTTTCTTTATGA 16408 30 100.0 35 .............................. ACGAACTGAATTACCTGACCTTACAAAAGTGAGTC 16473 30 100.0 34 .............................. ATTCTATTCTCTTGAGTTTTATCTATTTCTAAAT 16537 30 100.0 36 .............................. ACAGAAAAAGAAAATCCACTAACAGAGCAACCATAA 16603 30 100.0 35 .............................. TATGTTTTATCATATGTTCAACCTCACTTTTACTA 16668 30 100.0 35 .............................. CTACCACTTTTTGTATAACATATAGTAACATGAGT 16733 30 100.0 36 .............................. AACATAATAATAATTTCCTCCTTAAATTAAATTTGC 16799 30 100.0 35 .............................. GCTAATTTTAAATAAATATCAACATTTCCGGAATA 16864 30 100.0 34 .............................. TTAGGAATTACCATGTAGAATTTACCACCATTAT 16928 30 100.0 36 .............................. GTTTTAGTATCAGTTTTAGTGTTTGTATCAGTAAAA 16994 30 100.0 36 .............................. AAAGCTTCTTAAAATCTACTTAAATATGCCTACCTT 17060 30 100.0 35 .............................. ATATAAAAGGTCAAGATGGAAAAATTAACTGTTGG 17125 30 100.0 35 .............................. TTCTGATAATGTTAAGTTTAAGTCTGTTGCACAAG 17190 30 100.0 34 .............................. GAAGGAGCAGGGTCACTTGGATTATCAGTTTTCG 17254 30 100.0 36 .............................. TACATTGATTTAAAAGATGATGAAATTAATATAGTT 17320 30 100.0 35 .............................. CTCATCATTTATCACCTCTCTATTTTAAATACTTT 17385 30 100.0 35 .............................. TTTGCATCGAATCCAAGTTGAGTAAATCCATCTAT 17450 30 100.0 36 .............................. TGTAGATAATAGTTTAGTACGAGCAAAAAGAATAAA 17516 30 100.0 35 .............................. TTCCATCTATTTGTAATACACTAGCATTAGCTGGA 17581 30 100.0 36 .............................. ATCTACAATAGATAACTTAAGCCCAAGTAACTATGT 17647 30 100.0 34 .............................. TTGTATAAAAAAAAGAAGACTAAAACAAATCAAA 17711 30 100.0 37 .............................. AACCATAAGATACCTATGTATCCAAAAGGCGGTTTAA 17778 30 100.0 35 .............................. GCAGTAATTACACTCTTTGGTAATAACTTTAACCT 17843 30 100.0 36 .............................. TTATTTGAAATATCTATACCTTTCATTATTCATCTT 17909 30 100.0 34 .............................. TATTTAATAAGCTTATCTATAACTGGCTCAAAGT 17973 30 100.0 36 .............................. AAATTAGCCAATATAGCAAACAGAAAAGGAAGAAAT 18039 30 100.0 34 .............................. AGTAAGCCATGGGGTAGCTACAGAGTAAGTGTAG 18103 30 96.7 0 .................C............ | ========== ====== ====== ====== ============================== ===================================== ================== 33 30 99.9 35 GATTAACATTAACATGAGATGTATTTAAAT # Left flank : AATTCATTCCTTTTAGTTTAAAGGAGGGAATGTAGTGAGTAAAGTTAGTAATTATAATTATGCTTTTGTATTTTATGATGTCAATGAAAAACGAGTACAAAGGGTTTTTAAAGTTTGCAAAAAATACTTATCTCATTTTCAAAAATCAGTATTTAGAGGAGAAATGTCTCCTTCAAAGCTAATAAAGTTTAAAACAGATTTAAATAAAGTTATTGACAAAAATGAAGATTTCATTTGCATAATTAAGTTAATGAACGACAATGTATTTGGAGAAGAAGTATTAGGTGTAACATCGGGAGCAAATGGTGAGGATTTAATAATATAATTTACCAGGCAAAAACAAATTTATATCTACGAAAAACAAGGTGTAATGCGGATTAACATAAATATATTTAAAAAATTAATTTAAGTTGAGGGTGCTTGGTAAATTTTTAAGGATGTGTTACACTAACTATAATGAAAGCATTATCTTAATATAAGAAGTGGCTTTTTTCTTAGGG # Right flank : TTTATCTAAAACATACTTGTGCTTTGTATAATTTAAAGACTAACATTAACTATGATGAAACCAATTGTAAAAGACATATTGTTTTTAGCATAAAAATCAGAAGAGGCAACTGAAAATGTATGGTAGTAATTATGGATTTAATAGATACATTAAGAGTAAGCTTAGAGAATTTAGGATTTAAATTTACGTAAAATTATGAATTAAAAAATAAATAGCAAATTATAAAATCGCATTATTCAAGAATGAAACAGCAACCTTTTTAATTTATTGCGTCAGTTGCCTTGTATTAAGAAAGGATGCATTTGCAATTTGGTAATATTACGTTATTCGTTACATGGAAAGTTTACAATTATTTACACAACATGTAGACTTGGCGCGGTAAACAAACATTGTTCTTTGATAAATAAGCACTATAATATTTACAAAATATGCTATAATTGATTGAAAGATAGTAATTTGTATGAGCGATTATATGAGGAGATGTATTATGATTAAAAATA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATTAACATTAACATGAGATGTATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.50,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 69836-68694 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWT010000005.1 Clostridium saccharobutylicum strain DJ007 NODE_5_length_227518_cov_30.839369, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 69835 30 100.0 36 .............................. AATAGAACTTGCTAAAAGGTTAGGAGTTGCTAAAAG 69769 30 100.0 36 .............................. AATTAAGTGATGAAAGAATAGAAGAAAAAGAAGTTG 69703 30 100.0 35 .............................. GAAGGTAATGAAAGCATTTCACTCAACTGACTAAA 69638 30 100.0 35 .............................. GCTAGTAATGAAGATGATGATGTAGACACTACTAA 69573 30 100.0 36 .............................. ATAGGTGATAAGGATTATTCTATTTCTAGCAGTTGG 69507 30 100.0 34 .............................. TGTTTTCCATCCATTTCGTACTCATTCGAATTTA 69443 30 100.0 35 .............................. GAAACTTTTTCTTTTTTATTTTTAGATTTAACGCT 69378 30 100.0 36 .............................. AGAAATTTTATACACATAAGTTCATTCACTTCAAAT 69312 30 100.0 35 .............................. GATTTAATGGAAATTTAGATGAACTTTCTGTATTA 69247 30 100.0 36 .............................. ACTAGTGAAACTGCCATCAATACTTACATTGAATTC 69181 30 100.0 36 .............................. TTAAATAATTATTAGAATTAGATATACTACTAGTTG 69115 30 100.0 35 .............................. GCAAATGGAACAGATGTACTTGATGAAGAATATGA 69050 30 100.0 35 .............................. GCACATTTATTCAAAACCATTTGTATAGCATTTTT 68985 30 96.7 35 ..C........................... TGACCTACTACGTTTTCATGACTCCCCACCATGAT 68920 30 96.7 35 ........C..................... AGTGCTGTAGACATTTCCCCAATTACTAAAAGAAT 68855 30 100.0 36 .............................. TTGTCTAATTTTTTTATTCCTGGTATTTCAGTTATT 68789 30 100.0 36 .............................. AAATTATAAGCATATACAAGTGTATTTGTTTTTCCT 68723 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ==================================== ================== 18 30 99.6 35 GTTGAAGATTAACATTATATGTTTTGAAAT # Left flank : AGGGTGTTGAAACACAAGATGTTTCCTATATATCTACTTTGGATAGCTTGTTCTTAAAAGATTGTGTTAATATAAAAAAATTAATCAAACCTAATGGATTTAGACCTGTTAAAGCAGCACCAAGCTGTGGTTTAGAAAAAATGCGAGAATATGTATACCAAGAGTTTTTACCATATGCTTTGGAACCTAAGTTTAATACATATGATACTAGAAAATTTATTTGTACTAATAAGTCTATAGAGGTTAATGATAAAGAATCTATTATCTATAGTATTAATGATAAAAATCTATTTTTCTATTAAAAAGTAACAAGTATACAAATAATTTACCAGGCGATTTTAATAAGTAATTTGTAGCGAAATATCTATTTTATGAGCTTTTACTATTTTAAGTATTATTGTATTTAATTTTATAAAATAGCTGGTAAAATAATATGCAAATGTAGGTGAATGGCTGGATTAAAAGATATTAATATATATAGAAATGACTTATTTACTTTG # Right flank : ATAGATACAGTCCAACTAATTTAATAAAAATAAAAAAGGAAGAAGAGAATTTATGTATTTTGAAAATATAAAAATTATAGATATATCTACGTTATTAAAAGAGCCATCTGATATATATTCTCATACTAAGAGTGACATTTTAGAATATGAAACTCTAGCTGAGCATAATGAGCGGTGCATAAAATATTTTTATAAGATAGTAGATGTAAAAAATCTAGATAGTGTATTTAATAATTTTGAACAAAGACTATTAAAAGGCTGCTCAAGTAAATGCATTAATTTGTGGAAGGAAATTGTATTAAATACTGTATTTTTCCACGATGTAGGTAAGAGTAATCCTGGTTTTCAAAAAGAAAAAATGAAAAATGAAAAGTATAAAAATATAAAAGTAAATAATTCTAATCATTCCCGTGCATCAGGTATAGTTTTCTTTAATCATTATTATAATGAAGTATTTGCTGTTAATAATGATGAAGCTAAGGTGTTATTTGTTTTCCTAT # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAGATTAACATTATATGTTTTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 2383-2210 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWT010000003.1 Clostridium saccharobutylicum strain DJ007 NODE_3_length_262104_cov_41.480149, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================== ================== 2382 35 100.0 34 ................................... TGATAGTGCATTTTTGGGTTGTGTTGGTTTAACG 2313 35 97.1 34 .....................G............. GGCTTCTGCATTTACTTACTGTATGGGATTAACG 2244 35 94.3 0 ...........T...G................... | ========== ====== ====== ====== =================================== ================================== ================== 3 35 97.1 34 TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Left flank : CAGCAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTATGGAAGTTCCCTTGATGTAACAACAGATGCAGGACAAGCACCAGGAATAAACAGTGTTTCAGTAACTCCAGCAACTTCAAGTGTAGAGCAAGGTCATACTGAACAATTGACAGCAACAGTAGATGCAACAGGAGGAGCAGATCAAAGTGTAACTTGGTCAAGCAGTGATACAAATAATAAAGTAACAGTAGATGCAAATGGTTTAGTATCAGTAGCAGCAGATGCACAGCCAGGAGACTATACAATAACAGCTACATCAACAGTAGATGGAACTAAGAAAGGAACAGCAACATTAACAGTACATGGATTTAAATTTGCATTAAATGGAAATGAGTGTCAAATAACTGGGTATACAGGGACAAGTACAGACATTACAATACCATCTCAAATTGGTGGGAAGAGTGTAACAAGTATAGGTAATTATGCATTTAATGATTGTATTAACTTAATA # Right flank : GACTTCTGCATTTAGTTATATTAATAATGATGCAATATTCTATGTACCTGATTTGGCTAGAGCAGGATATGTTCAGTCATATAAGACAAATAGTAATAATATACAAATTATTTTGCCATCAGTTCCTTTAACGTTAGGTCAAAAAACAGCAACAACAGCAACAGTATCGTTTCCAGCACAAACAGGAGCGACTTCAGTAAAGCTGCAACAATCGGCAGATGGAGGAACTACTTGGAGTGATGCAGCAACAGGAGCGTTAGATGCTTCATCAACAAGTGCAACTGTAACAGGATTAACAGTAAGTACTTCTTACAAATTTAGATTAGTAATGAATGATGCTTTTTACGGAAGTTCCCTTGATGTAACAACGGATACAGCGGCAACGACAGCATACACAGTAGCAGCGGCGGCAGCAAGTTCATCACCAACAGCAGGAGTAGATAACGTAGTTACATTAACTGTGAAGGATTCAACTGGCAGCACAGATACAACCTTCACTG # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCAATAACAATCCCAAACAGTATAACAAGTATAGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA // Array 1 3695-3825 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAZWT010000066.1 Clostridium saccharobutylicum strain DJ007 NODE_66_length_5042_cov_32.404632, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= =============================== ================== 3695 23 95.7 31 .................G..... ACTACCAGTACCTGTACCGAAGCCTCCGGCG 3749 23 100.0 31 ....................... GCCACCAGTGCCTGTACCAAAACCACCTGCA 3803 23 95.7 0 ................G...... | ========== ====== ====== ====== ======================= =============================== ================== 3 23 97.1 32 CCCATTCCGCTTCCTGAACCAAA # Left flank : CTAATTCTACCTCTGCACCTAATTCTTCCGTTCCCATTAAAGCTTCCTTAACAAGAATTTCTGAATTACTCATTTTTCTTCCACATGTTAATCCTAATATTTTCATATAATTTCTCCTTACATATAATATATTTATGAATATTGTTTTTACTCACTTTTTGAATTATATCAATTTATTTGTATTCTAATAAGTTATTTTTACCTTTAGATCAAAAAAACTAATTTTCTTAACATATGTACTCGTTATCAATTAAGTTATATACTTAATGAAATAAACTACCATATATAACTTATATAAAAAATTAACGACGATTTTACTTGTTGCATTTCACTTTAAAAACATTTTTATAATATTATTGTTTAATTTTCTGTATATAAAAAAGGATATGAATATAAATTCACATCCTATAATAAGCTTAATTTACTCGTAGTACAATCTATTTCTTTTATTTACAGTACTACTCCCATTTCTTGTATTTGTGCCTGTGCTTCCTCCTGTA # Right flank : AGCCACCAGTACCTGTAGAACCTCCAGTAGTTGTTCCTGTGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCGGTAGTTGTTCCCATGCCACCTCCAGTAGTTGTTCCCATGCCACCTTTTAGCAATTGAGATGCACCACTATTTTGCCAATTTTGAACTTGGTTAATTGCTTCTTGAGGAGTTTTTCCTAATCCAACAAGCACTCCCATCAAAGTAATCCTCTGATATAAACGTTGCATGTCAGTTCCCTGTGTACCCATGGTACTTCCCTGTGTACCCATGGTACTTTGATTACTTTCTCTTAAAGCATAACTGACTAATGGAGTAATATACCTAATCCAATCATCTGGAGTAAATTTTGATGTATCTTGCTTTGCTTGCCTGTTCATGGACATGAAGAAA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCATTCCGCTTCCTGAACCAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //