Array 1 488-815 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSWZ01000023.1 Pseudomonas aeruginosa strain AUS485 IPC436_23.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 488 28 100.0 32 ............................ CCATCGTAAGACTCATGCGGAAACGCCTCCTA 548 28 100.0 32 ............................ TTTCAAAGCGCCCCGGCTTCCTGCCTAAAAAT 608 28 100.0 32 ............................ AGCCAGGACGACCGCCACTTTGCCACCGAGGC 668 28 100.0 32 ............................ TGTCGCTCCGGTCCTCCCTGGAGCTTGAACTG 728 28 100.0 32 ............................ ATCCTGCGCCCATGACCAGCGCTACCACCAAC 788 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : TAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAACATCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCCCATCACAAGACCTTTCGCGCCCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGGCCTCGAAAAAAGAGGGTTTCTGGCGGGAAAAACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTAG # Right flank : ACTCGAACCCACCTCGGCCACAACAGCCGCCGGGTTCGCTGCCGTCTAGGCAGAACCACCCTCCCCATCCCACTACCAAACATCCGAATATAAAGTTCCTACCCCGCCCGCCAGCCTCGCCCGTCCACGACAATGTGCCCCGCTTGGAAGCTCACGCTCCTCATACAGACGAAAACGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGTTGCCTTGGCACAGTATTCGATAGATCCGATAGGGACAGGCCACGGTCAGCATGGACGACATTTCTCCCAGCCAACTGAAGACGATCCTTCACTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGGGTCGAGTACGTCACCGACGAAGGCCGGCATTCGCACTACTGGAACATCCCCATCGCCAACACCACCAGCCTGTTGCTGGGCACCGGTACCTCCATTACCCAGGCAGCCATGCGCGAACTGGCCAGGGCCGGGGTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-31.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 10199-9691 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSWZ01000023.1 Pseudomonas aeruginosa strain AUS485 IPC436_23.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10198 28 100.0 32 ............................ CCTATTGCGCGCGTCGCGGCGTAGCAGAGGGC 10138 28 100.0 32 ............................ TGGGATAAGTTCGATCCCGTGGCAATCGACCT 10078 28 100.0 32 ............................ ACGTGCAAGCTGGTGAAGTAGCCACCCATCGC 10018 28 100.0 32 ............................ AATTCAAATTGGTAAGACTGCTCCAGAAAGTC 9958 28 100.0 32 ............................ GAGTCCGACCCGCTGCGCCTGGAGGCCGAGTT 9898 28 100.0 32 ............................ AGATCGAGCAGGCCAGTAAAGGAACCACTCGG 9838 28 100.0 32 ............................ TCGTCATCATGGCCACGCAAAGCCTGTCGGAT 9778 28 96.4 32 ........................A... TGTCCCGAAGTTCATAAGCGGGCTTCGGGCGA 9718 28 78.6 0 T..........C.....TC.TC...... | ========== ====== ====== ====== ============================ ================================ ================== 9 28 97.2 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGCGCGCGCAGCAATCGCTGCTGTCGGAAGAAGTAGTGCGGGGCAAGCTGGGTATGGCCGTGCATAGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGTTTCTGCCGGCGCGGCAGGGAGACAGGCCGCTCGTGGGTGTTGGGCCAGCAGGCTGTGGCCTGCCGGGAACCGAAGTCGCCGGCGAAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGCCTTGTACGAAGTCTCCGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTGGGTGGGTTTTTAAAGCCCTTTTAGATCAAAGGGTTAGAGATCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGTTTTTTGGTCTA # Right flank : CGGCCAGCAGCCCTGAAGTATCGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCTTTCCATGGGACTTCGTTGCGGACATGCCGATGAGGCGCTGGCGGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCACCGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGCTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACTCAGATCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCCCGCAACCCTTCCAGCCAGGGCCGGGCGAGCAGGGCACGAAGGTCTTCCGCCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 164166-163838 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSWZ01000011.1 Pseudomonas aeruginosa strain AUS485 IPC436_11.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 164165 28 100.0 32 ............................ TAAAAAGGAAACCAGCCATGACCACCATCCCC 164105 28 100.0 32 ............................ TGGATGATGCTCGGCAAGATGATGGAGGTCAT 164045 28 100.0 32 ............................ TGGGAGATCGAGCCGCCGCACCTGCTGCTGGG 163985 28 100.0 32 ............................ ATTTCATCATCTGTACCTAAAAAGTACAGAAC 163925 28 100.0 32 ............................ ATTGCCGTTCTCCTTGTCTTCCTCGGTGATCG 163865 28 96.4 0 .....................C...... | ========== ====== ====== ====== ============================ ================================ ================== 6 28 99.4 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : ACCGCTTCCCGCACAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCAGTTGTTCGAAAGCGCGAAAACGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACCTGCCTGCTCGACGAGAACGAAGAACCCGGCGAAACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCCCACCCACGCCAGTAGCGCCCCTCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGACGCGATCCCTTCGAGGCCCATTCGCGCGCGAACGGCGAAGCTCACCGCCCGTCCCGCCCATCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTTACGCCCTTGAAAATCAAAGGCTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATAGTTATAGGTTTTCGGGGCTA # Right flank : TCGCGAGCGATATAGAGCCATAGGGCTTCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACCCGTCCCTTGGGGTAATGCCCGTCAGTCAAGAAAAAACGGCGCGCCCCCAAGCAAGGGACGCGCCGTTTTTCCGAGGCCTTTTGTGCTGCGGCGAACGGCCTACAGTCCGTTCTTCGCCTTGAACTCGCGGCGGCGGCGATGCAGGACCGGCTCGGTGTAGCCGTTCGGCTGTTTCGTACCTTCCACCACCAATTCAAGCGCGGCCTGGAACGCGACGTTGTCGTCGAAGTTCGGCGCCATCGGCCGGTAGGACGGGTCGCTGGCGTTCTGCCGGTCGACCACCACGGCCATGCGCTTGAGGCTCTCGACCACCTGCTCCTGGCTGATCACGCCGTGACGCAGCCAGTTGGCCAGCAGTTGGCTGGAGATGCGCAGGGTGGCGCGGTCTTCCATCAGGCCGACGTCGTTGATGTCCGGCACCTTGGAGCAGCC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 165331-165478 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSWZ01000011.1 Pseudomonas aeruginosa strain AUS485 IPC436_11.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 165331 28 100.0 32 ............................ GCAAGTGCGAGCCCGTATCGTCCGCTTAGTGC 165391 28 96.4 32 ...........T................ GATCTCCGGCATCAGCGGGCGCGCCTTCGTCC 165451 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGCATAGGCAGCTAAGAAA # Left flank : CTGCCGCTGCAACGCATCCCGAGGGATGGCTTTGGCGGCCCCTCCATCATCCTCTTACTGGGTTTTTATCCAAGCCTTGGGCTTCCGAGAGAGGCTGCGGAAATGTCCGGGAGAACTGTCCGGCGTTTCCAGGGCCTGTAGGGCACCGGCCTGCGGAGGCCTGGCATGCACGAAGTCATGCCTGGTCTCCACGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGCAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCTCCGGAGCGACGATGTAGCGAGGGAACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCGAGCGTTCTTGGTTACTTCTTTCGCGCTTGAAAGAAGTGACTCGCCTGGGAAGGCGAAACAAGAAGCCAAGGCAGGCACGACAAGCAGCTAGACCACCCAACACCAGGCCCACTCAAGTTCCAGGCAACAGCGGCCCTGTC # Right flank : ATCGCGAGCGATATAGAGCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTCACTCGCCAGGTGGCGGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGCAGGGGGCCGAGCGGCAGGAAGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGTGCCTCCGGGAGCAACGATGCAGCGAGGGAACCCCAGTCGCGCAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAAGTCGAGGCAGGCACGAAAAGCAGCTAAACCACCCAACATCAGGCCCGCTCAAGTTCCAGACAACAGCGACCCTGTCGTTCACTATCGTGTAGGCAGCCAAGAAATCACGAGCGATATCGACCAACCGCTCGCACTTATCCGCCAGCTTCGCCGGTGCGAGGAAAGGAACGCGGTAGCGATGA # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11070-10682 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSWZ01000003.1 Pseudomonas aeruginosa strain AUS485 IPC436_3.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 11069 28 100.0 32 ............................ ACGGCCAGATCGAACTGGCCTACGCAGTGGAC 11009 28 100.0 32 ............................ ACCACTGCGCTGCACCTCACCCGCCAGGAAAC 10949 28 100.0 32 ............................ ATGCCAAAGATTCCCGACCACCGCAGCAATCG 10889 28 100.0 32 ............................ ACTCGGTCTGGGCTGTGCAGCGCATGTGCGAT 10829 28 100.0 32 ............................ GGAATGGCGTTGTTGTTGCCCATCTTCATCAG 10769 28 100.0 32 ............................ AGTCCTGGGGAGTCTACCCCATGAACCAGGCC 10709 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 7 28 100.0 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCACGCACTTGTTCGACAACGCGAAAGTGCGCTTGAGGTCGGCAATCAACATCCTGGTCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCGAGCCTGTAGCGCCACTCCCCCGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGCGGCATCGCTAATCACAAGACCTTTTGCCCTCGAACGGCACGGTTGATCGCCGTCCCGGTCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTCGGACGATTTCTTACACCCTTATAAATCAGTAAGTTACGAAGCCTCGAAAAAAGAGGGTCTCAGACAGGAAAAGCCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : TCGCGAGCGATATAGTCCCGTAGGGCGAATACCGCCACAGGCGGTATCCGCCGATACCCCGGATAAACGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGGCTTCGGCATATGGAGGGCACCCCAGCCGAGAAGCGGCTGGGGCCGGATGCCGGGGCGAGTCTTTTGGTTCCTTTTGGACGCTTGCAAAAGGAACTCGCCTGGGAAGGCGAAACAAGAGGCCAAGGCAGGCACGAAAAGCAGCTTGACCGGCAAACATCAAGCCCGCTCAAGCGCTAAGCAACAGCTACCCCTCAGTACCCATCCGCCACCGGCGCCAGGTAAAGCCCGCCCGCACCGAGGGCAATGCGCAGGTTGCGGATCTCCCCGGCGCGCAGGGTCAGGGTCTGTCCGGCGAGGATGGTCATGCCGTTCCGGCAGGCGTCGCCAGGGCCGTTCGGCGCAAGACGCACGTCCACCGCACCGGGTTGCAGGTTCAGGGCCAGGCTGGCGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [36.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //