Array 1 403856-405813 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041217.1 Saccharibacillus brassicae strain ATSA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 403856 33 97.0 33 ................................T TTTTGCGTCTCAGGCGCTCGGATCGGTCAAGCC 403922 33 100.0 34 ................................. CATCATTACTGGCGGTCCATTTCCGTGGCTGCTG 403989 33 97.0 32 .............C................... CCATCAAAGTGTTCGGCATATTCGGAGGTGAC 404054 33 93.9 33 .............C..................C GATTTCCGAACTCAATTTGTCGACGAGTTGCAT 404120 33 93.9 34 .............C..................A TAGGATGCAAAATCCTTAATAGCAAACGTCCTTC 404187 33 93.9 32 .............C..................C TCGTAGCCAGCTTTACGTCCGTAATGCCAACC 404252 33 93.9 34 ...T.........C................... ACCCCGTTGCTGTCGGCATCCGGTGGATCGGTAA 404319 33 97.0 33 .............C................... CCCCGGATCACGATGCGCTACATAGGCATCATA 404385 33 97.0 35 ................................A GCCAACAAAGTCATGCAGCTTAACTCGCTGATTAC 404453 33 100.0 34 ................................. ATGCGGAAGCGGATGACGGCGCGCCCATCCCGTG 404520 33 97.0 34 ................................C GCTAAACTCAGGGCGGATGAACAAGCTGAAAGGC 404587 33 100.0 35 ................................. GCGCATAGACCTTACCAGCATCGTCCGCCAGAGTG 404655 33 100.0 32 ................................. ACATGCAAAAGGAGCTGGACGCGAAGATCGTA 404720 33 100.0 32 ................................. TGGGACGTGTATGCTCAGCTCAAGATATTTAA 404785 33 97.0 35 ................................A TACATTGCTCCATCTCCTTTACCGTATGAATAAAG 404853 33 97.0 33 ................................T CCGCGAAGTCCCGTTCCATCTGCTTGCATTCTT 404919 33 97.0 32 ................................T GACTCGGTGTAGGCTGCGTGCTCCAGGACTGA 404984 33 97.0 33 ................................A CCTATGAACGTCGTATCTGATCCCGGCTTTATC 405050 33 100.0 32 ................................. ACGTATCCGACGCCAGTTTGCCCCCGTCATTC 405115 33 100.0 35 ................................. AATCCATCGACTACAAAACGGACAAGGACGGGAAC 405183 33 97.0 33 ................................T GACCTACGTTTGGGATATGTTCGTCGGCGCCGC 405249 33 100.0 33 ................................. GGGTCTCGCCGAGGGCGACGCAGTCGTGCTCCT 405315 33 97.0 34 ................................T TACTGGTCACGTCGACTGCAATCGCAGACCTGAC 405382 33 97.0 33 ................................T CGAATTTCACTTGAGGAGGCACAACGTTTGATG 405448 33 100.0 33 ................................. GAGTACTCCACTCGAAAATGACTGGGCAAAGCG 405514 33 100.0 33 ................................. GGGCCCCACCCACCGGGCGCTACCGGCTCTGCA 405580 33 87.9 35 .........T........AT............A CGGATTCCTTTGTAAGCCGCTTCGGCGTGACGCTG 405648 33 93.9 34 ...........C....................A GCGCATGATAAGACTTGCCGCTGCCTATAGTGCC 405715 33 93.9 33 ....T...........................A AGGATCGCATACGATTCCGGCAGATGATGTGTG 405781 33 81.8 0 ...A.....TA..A.........A........T | ========== ====== ====== ====== ================================= =================================== ================== 30 33 96.6 33 GTCGCACCCCGTGTGGGTGCGTGGATTGAAACG # Left flank : CGAGCCGATCGCCAGGCCGAAGCCGAGCCATTTCTGTTCCGTCGGCCGGCTTTCTCCGCCCTGCGGCTTGTTACTTGGATCTGCGTGGCTCCGATCGTGTTCGCTTTGATGTGGACTCATGCTCGATCGCCTCCCGTTTACGAGTGGGTGAAAGGATACATGCCTAAGGCTGCGCCGGTGATTTTGCAGATGCGGGTTGCGGGGTCGGCGCGGCCACCTGAACGTCTTCTACCTTTCATGGTAAAGTAACGCGGGTCCGTTTGCAATTTTGCAGGTATATATGGAAGGTTCCCACGCGGCTTGCACTTGATACGGGGAAAACACGCCTAAAATTGCGAACCTGAAGCTCACATGAAACCCCGGGCAGGTTCGCACTCCGCACCCCGTACGGAATTAAACGATTTGACTTGTATTTTCGTCTCGTTTTGGGTAGGCTGATTTTGAGGTTCGCACTTTTGGGCTCGGGAAGCCTTGTCGGGCTTGGGCTGGAAGGGTGAACA # Right flank : TCGTAGGATAATCACCGCTCAATCACATCTATGGATCGCACCCCAAGCAAGTAATTAAACCCAATCCAAAAAGCCGCAGGATCCAATACCCGCGGCTTCTTTTTGTTACGTTCTGGACTCGCTTTTCTACAGCAGCAGTAATCCTTCCGGGTCATAGCTCTGCTTCGCGCCGACGTGCTCCACTTTTCGCTTCCAGTTCGCTCCAAGCATGTAATAGCGCAAGCTATCCGTTTGAGGATTCATAACGGCTTCAAGCTGCGTTTTCATCTGCTTGAACTGCAGCGGATCAACCAGACATTCAAACACCGAGTTCTGCACGCGTTGGCCGTAATTTTGACAGATTTTCGAGATGGAACGAAGCCGTTTGGCTCCGTCCGGCGAAGTGGTCTGTACATCGTACGTGATCAGCACCAACATGTCGCGCCTCCTTGTCCGTTCCTTTATTCTTTTCTAAGCTCCCCTTACTTGAGGCGGTATGGGCGGCATGATGTAAGGAGCTG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCCGTGTGGGTGCGTGGATTGAAACG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCCTGCGTGGGTGCGTGGATTGAAACA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.20,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,1.01 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 414310-416199 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP041217.1 Saccharibacillus brassicae strain ATSA2 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 414310 32 100.0 34 ................................ GTCTGATCGGGAGCTGCATAGATTGTGGCTGTCA 414376 32 100.0 34 ................................ TTATCTCTACGAATTCTTCTTGTTGCTCGCATTC 414442 32 100.0 34 ................................ CGACATGAGTATCACGTACAGCGATCTCGATAGT 414508 32 100.0 35 ................................ GAAAAAGAAAAAAGAGAAAAAAGCCAAGAAGCCGA 414575 32 100.0 34 ................................ CAAGTACCCGATGCGTAAGCATACATTTGATCCG 414641 32 100.0 35 ................................ GAGAAAAGCCGCAAAAACTGGCGGCGATGTGATGG 414708 32 100.0 34 ................................ AGTCTCCAGCCGCTGATCCAAGTAAACGTTGATT 414774 32 100.0 33 ................................ CGTTCCGATGAAGTCGACGAACTGCTCGCTGCG 414839 32 100.0 33 ................................ CGAAGCCACGCTACCAAGATGGGCAGATGCTTC 414904 32 100.0 34 ................................ GTGGATGTGCGGGATGCTTCGGAAGCTTGGAATG 414970 32 100.0 34 ................................ GTCTCGGTCGCGTGTTTAGCGGTCAGGTTGAACG 415036 32 100.0 35 ................................ TCCACCATAGGGCGACTGCTCGTAAACATGTCATC 415103 32 100.0 35 ................................ GTTTTCTGGCATTTGGGCCGACGCTATCAAGACTT 415170 32 100.0 35 ................................ TCGCTCATCCAGCGTGATGACCTTGTACAACCGGG 415237 32 100.0 35 ................................ TTGCGCCGTCTGTTGCATCTGCTGCGTTTGTTGCG 415304 32 100.0 34 ................................ TTGCATATAATAACGATGTACTGAATATATGTTC 415370 32 100.0 35 ................................ TACAATACTTACTGGAAACAGCAGCGGCTGCGTCT 415437 32 100.0 36 ................................ ATGTACGTTGATGACCGGTACTTTATGGGGGTTAAG 415505 32 100.0 34 ................................ CATGTCAGAAAGCAAGTCTTCGAACCGCTGCCGC 415571 32 100.0 35 ................................ ACGGTAAGCGGAGAGCGAGCGATCGTCGAGCAAGA 415638 32 96.9 33 .........T...................... AGCTCCAAGCGCTTGACCTGCTCCATCGCGTTG 415703 32 100.0 35 ................................ TGGCACGCTGCACGGCCTCTCCGCCCTCCACAGCG 415770 32 100.0 34 ................................ CTGGTCAACGAACAAGCGATTATGGATCTGCTGT 415836 32 93.8 34 ..........A....................G AAGGGCTCGACGTCTCCCAAAAAATCGTCCCACC 415902 32 96.9 35 ..........A..................... TCTATAGGTGTAAAAAGAAACGGCCCCGCGGCGTG 415969 32 96.9 36 ..........A..................... TCCGCTTGGAGCTGCTCCGCTTGTTGCGCCGTCTGT 416037 32 96.9 34 ..........A..................... CGCTAACGACTTCTCATTATGTACACGTCAATTC 416103 32 100.0 33 ................................ GCGAGAACCGGAAACCTATGCCTTTAAGCCTTT 416168 32 84.4 0 ...........CC..A......A....A.... | ========== ====== ====== ====== ================================ ==================================== ================== 29 32 98.8 34 GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Left flank : AGTCTGTGCTGAAAAGCCTCCGAGTATTTGCCCAGATCGTGCAGACGTCCCGCAGCCTTCGCCCACTGTTCGGCTCCGAAAGGCTTGGCCATGTCGCCTGCCAACCTTTCAACCTCGGTTAAATGAGTCCGGAGCAGCTGCCACGTTGATTCCGGACCGATCGACTTGTCTTCCCTCTGCTTCGTATGCGCGTAATAGGGCAAGGCTTGTTCTCCTTTGAATGAGTTCGAGGCTATTCTGGATGCTTGCTTAATTAAATTCGGCATTATCCATAAATATCCTTCAAAGAGATTAATTTATTTTATATACGTTTGCTTGTTTTTATCTCAAACATGCGAACCTGAAGCTCCCATGCTATTCCCGGGAGGTTCGCACCCCTTACGCGATAAGGGCTGCAGCCTTTTCGCTTGTATTTTTGTCCGCTTTTCGTTAGGCTGATTTTGAGGTTCGCACTTTTGAGGCCGAAACCCCTTGCGGGGTAAGGTCTCGGAGTGGGTGCA # Right flank : CTCGACCATCTTGCCGCCTTTCGCCTTGCAGAAATACACCCCCCCACACCCCTCTCCAACAAAAAAAGACGCAAACGGCCATTCCTCCGTTTGCGCCTTTTTTTATACCTTCCCGCAGTAGCAAACCGCTGCGCCTAACTCCTTAAGCTTCCTCAATCTTCACCGTCATCCCCTGCAGGGCCGCTCCGGCGGAGCGGTTCAGGCGGAAAGACTGTTCGCCGAAGGAGACTTCTTCGCCGCCCTGGAAGCGGATATTGCGCGCGACGGCGTAATGCACGACCGAGAACGTCAGCTCGAAGATCTCGTTGCCGGAGCGGCGCGAGTCGAGCATCTCGAACTCTTCGGAGCCGAAGTCTGCCATGCCGTGCGTGTACGCCGCTCCGCCTCCCTCGCTGCCGTACAGGCCGACGAATACCCACAGGTTCACCGGCAGCTCGTTTTCCTTGAGCAGCTCGGTGCTCGCCAGGTAATCCGCCCGGCTGACGAGCAGCGGCGCGGAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCGTGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.40,-5.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //