Array 1 102-1411 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGZ01000039.1 Propionibacterium cyclohexanicum strain DSM 16859, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 102 28 100.0 33 ............................ TTTTCCCGGTGATGACCGGATTCCGTGGTGCGG 163 28 100.0 33 ............................ GGGTGATGGTTTGCCCGGCCTCGATGTGGTCGG 224 28 100.0 33 ............................ GAGTCCCAGAAGACAGAAACAGCAAAGTACTCC 285 28 100.0 33 ............................ CTCCTACCGGGGTGACAATATCTGGCAGGATAT 346 28 100.0 33 ............................ CTATCCGAAGCAATCGAAGCAGACCGAAACCAC 407 28 100.0 33 ............................ TGATATGAGACGAGGCAGAAAAATGCTGGCAAG 468 28 100.0 34 ............................ CGCGAGCGGCTCGCACACGGCGCTTGTTCGGATA 530 28 100.0 33 ............................ GTGTCCCACACGAGCCCCCGAGCGCCGATCTGG 591 28 100.0 33 ............................ GTCATGCGTCTGCGCGCTGGCCTCGATGTCGCG 652 28 100.0 33 ............................ CCGCCGAAGCCCGTGTAGTGGCTCGGATGGTAA 713 28 100.0 33 ............................ CAACCAGCTGGTCAACATCACTCGCCACTGCCA 774 28 100.0 33 ............................ CCTGTACGACCCGGTCGCGGCCGCATGGTGGAT 835 28 100.0 33 ............................ CCCCGTCGGAGAAGACAAAGCACCGGACATGCT 896 28 100.0 33 ............................ CCGCGGTGCACGCCCCGCACCGTCACCACCCTG 957 28 100.0 33 ............................ CGCTCGTCATCGCCCCACCTCTGGGGTGATCGT 1018 28 100.0 33 ............................ CCTCTACGCCCGCCTCAACGACGCCCGCATAAG 1079 28 100.0 33 ............................ CATGACGCGAGATAATCCCGCTCCCGCTCCCGC 1140 28 100.0 33 ............................ GGAGTGGCTGCAATACATCGTCGCGGCCCGCCC 1201 28 100.0 33 ............................ CGCTGCTCGCGTGCTGGTCAGCCGGGTTCGGCA 1262 28 100.0 33 ............................ CCGATGGAATCGAGGAGGCGTTTGAGGGCCAGC 1323 28 96.4 33 ..................C......... CGCCGACACCGCCGTGAACTACTGGGAGCACCG 1384 28 96.4 0 ..............C............. | ========== ====== ====== ====== ============================ ================================== ================== 22 28 99.7 33 GTCTTCCCCGCGAATGCGGGGGTGAGCC # Left flank : ATCCTCGGAAGGCCTCGGCCACTATCCGGGCACCGACGCGCCGCGCCCTCCCACCACGGCTGCTGCGTCGCCTACACCCTCATCTGGGAAGAGCCCCGAGAG # Right flank : CCGGCCCCATCCGGGGCGCCTACGATCATCTCGCATGGGAAGGATCAGGAATGAGTACCAGTTGGAACGTCACCGTGGGGATCGGGGAAGTCGACCCCGAGGCCTTCGACCTTGACCGGTTCGCCGAGTGGAGTGGTGTCCTCGCTGCCGCCCCACAGGGGGGTGCGCAGGTCGTGTTGACAATCCCCGCCGAGGGGCTGCGCCAGGCGGTGGCCACGGGGATGGCGATCGTTGAGGCCTGCGGGCACACCCCGACAGCGGTGGACGCGCTCACCACGGGCGCATTCGACCACCGCTCGGCAGCGGCTGCTCCGGACAGGGAACAGTCTTCCCCGCGAATGCGGGGGTGAGCCGGCATCAAGGCCAGGGGCGGTGAGCTCCCCGACCTCCGACGTCGTTCCCGCGAATGCGGGGTGAGCCCTGCGCCCACTCACCAACCCGGGACCGCCCAGCGTCTTCCCCGCGAATGCGGGGTGAGCCCTGCGCTGTGCCTACTTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGAATGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [30.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6022-131 **** Predicted by CRISPRDetect 2.4 *** >NZ_FOGZ01000022.1 Propionibacterium cyclohexanicum strain DSM 16859, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ====================================== ================== 6021 28 100.0 33 ............................ CCGATCATCGTTGCTACTGTGGTTGCCGAAGCC 5960 28 100.0 33 ............................ TACCCGTCGAATCGGACAGATTCATACGGTATA 5899 28 100.0 33 ............................ GGATCGCCTTGATCACCGGCATCAGGAGGCTGA 5838 28 100.0 33 ............................ TTCGAAGGCGGTCTATGCGGCGCAGCTGGAGGG 5777 28 100.0 33 ............................ GTGTCCCACACGAGTGGTGCCACGAGCCCGACC 5716 28 100.0 33 ............................ CCGGATCGTCGGGAGAGGATGAAGCATCCCACG 5655 28 100.0 33 ............................ CGTGGATTCTCCTGAGGAAGGTCAAGTCCTCGG 5594 28 100.0 33 ............................ CCGTCCGACCGCGCCAGCAGCCCGCCTGACCCG 5533 28 100.0 33 ............................ TATGCTCTGAACTGTTCCGGAACAGAATACGCC 5472 28 100.0 33 ............................ CTCTCTTGAAAGGGGCCATTGTGGCCAAGACTA 5411 28 100.0 33 ............................ CGCAGAGATGGCGCTTCAGTACCCGGGGAGCGA 5350 28 100.0 33 ............................ TCGCATGGGCACTCCACCTCCCATTCGAAGACC 5289 28 100.0 33 ............................ CGCGCATGGCTCGCCGCCGGGGCGGCCGTCGCC 5228 28 100.0 33 ............................ CGGCGCGGCGGGCTTCGCGGAGCTTGCGTTTGC 5167 28 100.0 33 ............................ CCGGTCAATGTTGAGGGGTGGTGGGGGGGTGTT 5106 28 100.0 33 ............................ TGCCTACCGGGGTGACAATATCTGGGAGGATGT 5045 28 100.0 33 ............................ GATCGGAGGCGAAGATATCTGCCCTGGCGGCCG 4984 28 100.0 33 ............................ CAGCCCGCCTTGTCGGCGAGTGCCCGCACCGTG 4923 28 100.0 33 ............................ CACCAGCCATTCCGCCATCACGGAGCGGTACCG 4862 28 100.0 33 ............................ CGTCTGCACGTCGTCGGGGGTGAACCACGATGA 4801 28 100.0 33 ............................ CCGGCTCTTCGCGGCACTCCGGCAGCACGGCTA 4740 28 100.0 33 ............................ TTGTTCTGGGCCAGGATGAGGGAGTCCTGAGGC 4679 28 100.0 33 ............................ GCAGCGCGGCGGCGTGTTCGGCACCGCGCAGCA 4618 28 100.0 38 ............................ CTGCACCCTCCCGTGGATCTCGACTACTACCTGGACCG 4552 28 100.0 33 ............................ CCAGGGTTCGCCTTCGCGGTTGATGACGCGGAC 4491 28 100.0 33 ............................ CGTCGACCGCATCGCACGGACCGAATACGCACC 4430 28 100.0 33 ............................ CGTCATGGCAGGTGATCTACGGCGACACGGGAT 4369 28 100.0 33 ............................ CGTCATGGCAGGTGATCTACGGCGACACGGGAT 4308 28 100.0 33 ............................ CTCCGCCCACAGGCCAGCCGTGACTTCCGCGCC 4247 28 100.0 33 ............................ CTCTCCGCCGACATGGCGGACGCGCACAGGGCC 4186 28 100.0 33 ............................ CAGTTTCTCGCGACCGTCGCAGGCGAAGGGCGC 4125 28 100.0 33 ............................ CATTCGTGCTCGGGAAGCCCGGCCTCGGCAAGT 4064 28 100.0 33 ............................ CAACACATACACCTGCGCCGGCTTCAAGACCGC 4003 28 100.0 33 ............................ GCCCGAGGTGCTGGCCACGCAGCAACGATTCGA 3942 28 100.0 33 ............................ CCCGAGGCTGGATTGCACTGCGCTGCGTCTGAC 3881 28 100.0 33 ............................ CCACTGCGGCAGTCCCCACGCTGGCGACAGTCT 3820 28 100.0 33 ............................ TGTGACGAGCTCGGGCGGCACGATGTTCAAAAA 3759 28 100.0 33 ............................ CGGGCCGAACGTTATCGGCACCCAGCCCGGCAG 3698 28 100.0 33 ............................ CTGCATGAGTCCCGCCGAAGGATGCCCTGCTTG 3637 28 100.0 33 ............................ CGGGCATAGTTCCTACACCCACCCCCTGAAACC 3576 28 100.0 33 ............................ CCAGGCGATTACCCCGGCGGACACGCCGGGGTA 3515 28 100.0 33 ............................ CCAGGCGATTACCCCGGCGGACACGCCGGGGTA 3454 28 100.0 33 ............................ CGTGTGCAGCCCGGTCTGGTCGATCACGAGCCG 3393 28 100.0 33 ............................ GTATGGGAATGGTGCCTGGAGTTGGTAGCTGGC 3332 28 100.0 33 ............................ TGCGATATCTACTGGCCCGACGGCAGACACGAC 3271 28 100.0 33 ............................ CAGGAGGCCTCCCAGCGGATTGACTGGCTCAAG 3210 28 100.0 33 ............................ GCCGGTCAAGCGCCGCACCGAGAGACTCGTCAA 3149 28 100.0 33 ............................ TCGCCCGCGTCCGGTGCACAGCCACAATCACGA 3088 28 100.0 33 ............................ CGTGGCCCCTGACGCCACCGACGTCGCACCGCC 3027 28 100.0 33 ............................ CTAGGTGATCACCCCGGCGACCGCGCCGGGGTG 2966 28 100.0 33 ............................ TTCTAGTTGGCCGACTCAGGATCCCGGTGCTAG 2905 28 100.0 34 ............................ CATTGAGGACCTTCATGCACGCGGCGGGCAGATT 2843 28 100.0 33 ............................ CGCGACAGCCCACGTGAGGTTGAACGGTGCGGA 2782 28 100.0 33 ............................ TCTACTACGAATCTGATGGCTGGCGGGCCTCCA 2721 28 100.0 33 ............................ TCGCATACGAGAAAATCTTGTGGATCACGATAT 2660 28 100.0 33 ............................ GTCTGTCTCTCCCCACCGGTCGCCGGGGAGAGA 2599 28 100.0 33 ............................ TTCACGACCGGACGGCCCGAGTTCGTGTAGCGC 2538 28 100.0 33 ............................ GGTCTCGGCCAGGCCACCGCTCCGGCGCATGAC 2477 28 100.0 33 ............................ GTGCTGCGCGGCGGGAGTGAGCGTGCAGAACTG 2416 28 100.0 33 ............................ TTTCGGCGCCGGTCCCCTGTCGCGTTTCTGGCA 2355 28 100.0 33 ............................ CCCAATACACCAAGCCCGGCGCCGCGACCCACT 2294 28 100.0 33 ............................ CTGCACCCTCCCGTGGATCTCGACTACTACCTG 2233 28 100.0 33 ............................ CTGTGGGTGGACGAAGACACCCTGTACACCCGA 2172 28 100.0 33 ............................ CAATCATCCCCCAAGCAGTCCATTCATCCGATT 2111 28 100.0 33 ............................ CGCCCCCAGCCACACGACCGGCGCCTGACGATC 2050 28 100.0 33 ............................ TGGATCGCGGCGGCCGTGACGGGCTCGCTGCTG 1989 28 100.0 33 ............................ CTTCAACCTTCGGGTCCAACGTGCACACCCAAG 1928 28 100.0 34 ............................ CGGGGCCTTCACCCGGCTCGTGCTCGACACCGGG 1866 28 100.0 33 ............................ CAACATGATCGGGCAACTGAGGAGATCCGGATT 1805 28 100.0 33 ............................ CATTCGGGGCGAAACACACGATAGCAGCCTTCA 1744 28 100.0 33 ............................ CCAAACACGCAAAAGAGTGCCCCACGCCAGACC 1683 28 100.0 33 ............................ CAATCGTGATCTGGTCAGAAGCCTTAACGGCCA 1622 28 100.0 33 ............................ CGAGGCTTCGGGCTCCGCGCCGCCTACGTCTGG 1561 28 100.0 33 ............................ CGATTTCCAGCCCGTTGAGCTCCAAGAATGCGA 1500 28 100.0 33 ............................ CCGTCCCCGCTTGATACTGACTTGGCGACTGTT 1439 28 100.0 33 ............................ CGCAAGGTCGGCTGTCCGTTCTCCCTCCACGTG 1378 28 100.0 33 ............................ CTCACGTGAGGGCGTCCCCCACAGTCCGGAGCC 1317 28 100.0 33 ............................ GGTCAGTCTGCTGCAGGACCCAGCGGGCCTGGG 1256 28 100.0 33 ............................ CGTCAAGCGCGCCCTCACGGTCATCCGCAAGCA 1195 28 100.0 33 ............................ CACTTACCAGGGTGACAATATCTGGGAAGATAT 1134 28 100.0 33 ............................ GCGGTGGCCGCCACGAATTTTCTTTCAGCTCTA 1073 28 96.4 33 .................A.......... CTCGCCCCATAGGCCGGTGCGCCAGTCGGAGAC 1012 28 100.0 33 ............................ CCTCCTGCCCTTCCTCATCAACGGCTGGTCGGC 951 28 100.0 33 ............................ CAAACAACTCTGCATAGCAGCCGCCAGATACCG 890 28 100.0 33 ............................ CGGTATGTTGAAAAATCAACTTCCACACGGATA 829 28 100.0 33 ............................ GGTACGCGTCACGCTCGCGCCGCCAGCGTCGCG 768 28 100.0 33 ............................ TACACCACAGCGGGTGATGGTGGCGGTGGTGTC 707 28 100.0 33 ............................ TCCTCAAGGCGGCGAAGGTCGATGGGCACAAAA 646 28 100.0 33 ............................ CTGGTGCTTGTCGGCTCACCCCCGAACATTCGG 585 28 100.0 33 ............................ CTGTCAACGTCACGCTGGGACAGCAGAAGAAGG 524 28 100.0 33 ............................ CGGGCGGCTTAGAACCATGAGAGACCTTGGAGA 463 28 100.0 33 ............................ CGCGACAGCCCACGTGAGGTTGAACGGCGCGGA 402 28 100.0 33 ............................ GTATGTGAAAGGCACCCTCTAAAATACTGCCCG 341 28 100.0 33 ............................ GGAAAAATCATGGATCAGATCAGGCACACGCTG 280 28 100.0 33 ............................ CTCATCGCACAAAACGCCATCATCGGACAAGAC 219 28 100.0 33 ............................ CCAAGCCGTAGCCGCCGAATGCTGGCGGCAGGG 158 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ====================================== ================== 97 28 100.0 33 GTCTTCCCCGCGAATGCGGGGGTGAGCC # Left flank : CCACGAGGCCTGCTGCGCTGGCCAGACACCCACCGCCAAGCCGACTGGGGCGTCCGTAGCCCGGTAATGGACGGGACTCGCATAGTGGGCTCCACTCCCCCGGCGGTGAGGCACTTCCCCCGGCGACTTCTTTGCTGTGCAGCCCCTTGGTTGTCGCCGATAAGTGTCCTTACCCAAGCGGCCCACTGAAGGATGACCATTGGCGGTATCCCGGCCCTCTGGCCGTTGTTCCAGGGGTGGCAACACTTCAACGCAGGGCGCGATTGAAGCTCGCCGCCTGTAAAGCAACGGCTCGCTCCCCCACCTCATTGGGCATCCGGTTGCTGGTGATGGAGCTCTCCGGTTGTCGCCCGATCCGGAGAGCTCCCGACGTCATGTGGGATAGCCGCGGACCCAGCGATCCTGCCCCCGCGAGCTCCATCCCAGCTGCAAGGCGCCAGGGGGAGGCGGAGTATGCTTCTATCTAGGCTCGGCAAGCACGACACACCTAGTCACTAGGT # Right flank : CGACGAGTGTGACCGTGAAGGCCCGCCACCGAGAGTGGCTCATCCCAATCGAGGGTGTAGTTGGGGTCTGAATCCGCCTGTCTCGAGCAGGCTTCTGGCGATGTAGTTGGTGAGGTTGCGGAAGCCCAGGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCGCGAATGCGGGGGTGAGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAATGCGGGGATGAGCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //