Array 1 11482-11981 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFL01000028.1 Absiella sp. AM29-15 AM29-15.Scaf28, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 11482 33 93.9 33 ...............................CA ATGATTCATTGTCTAAGTCGTTTACGTCTTGTG 11548 33 93.9 33 ...............................CA TTTCCTGTACTTGCTTGATAAGGATAGAAATTA 11614 33 97.0 34 ...............................C. TTGTATCACGCTCAATATTAAATCTAAGGAATGA 11681 33 97.0 35 ................................C ATACTGTGCACGTAACTACACCGGTAGAGCGCTCA 11749 33 93.9 33 ................A...............C GAGTGTACGATCAACGTTGCTGAAGGGGCTGTA 11815 33 100.0 35 ................................. AAGTTGATTGATCATAGATTCCCGTTCATCCTTAG 11883 33 100.0 35 ................................. TTTAACGGCACGACACAGAATTTACAGTTTCTTAT 11951 31 78.8 0 ..................A.A.--.....G.CA | ========== ====== ====== ====== ================================= =================================== ================== 8 33 94.3 34 GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Left flank : ATACGCGGTGATTTGGATGAGTATCCACCCTTTTTAGCGAGGTAATTTTATATGCTGGTATTGATAACATACGATGTTAATACAGAAACGAAAGCTGGGAAAACCAGATTAAGAAAAGTAGCAAAAGAATGTATGAATTATGGGCATAGAGTGCAAAATTCTGTTTTTGAATGTTATATGGATAATGCAAAAGCACTTGAAGTTAAACATATTCTGGAAAAGATTATTGATAAGGATCATGATAGTTTAAGATTTTATTATTTAGGTAATCGATATGAAAATAAGGTTGAACATATTGGTGTAAAACCTAGTTTTAAATTAGATGATGTATTGATCTTATAGTAACGCGAATATGAAGCTCCCATGAAATCGCTGGGAGGTTCGCGCAAAAATGTGTTATATTTTGAATGATATGTAACATATTGAAAATAACAATGTTAATTTAAAAAAATATTGTTTGAAAATTCGTTACATTAGTTTGAATTCGATACATTTTTGCT # Right flank : ATCTAACAACGCCCACTTATTTTGGCGATATGCCCGCCTTTTTTCAGAACACCAATTTAAACACTGTACAAACCAATGAATTTATATCACATTTTTATAAACAATTTTACAAACGACCGATAATACAAAATACTATGTCTAATGGCTCTATAATTGTGTATAATATATTCGTTTGATTATGAGGTGAAAATAAATATGTACAAACAATATAGAGAAGGCTGGCTAGAAGTAATATCTGGATGCATGTTCGCAGGAAAAACTGAAGAATTGATTCGTCGTATTAAAGTATTAGAGTATGCAAAAAAGAAAATAGCTGTCTTTAAACCAAAAATAGATAATCGATACAGTGAAGAAAATATTGTATCGCATGCAGGAAGTAGTGTGAAAAGCTTTTCAATTGAAAATACACATGAAATATTCAATTATATTGATGATTCATATGACGTTATCGCGATAGATGAAGTACAATTTTTTGATGAAGAGATTGTTGAAATTTGTGA # Questionable array : NO Score: 5.44 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.47, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTATATGAGCTAGTGGATTTAAATT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.52%AT] # Reference repeat match prediction: F [matched GTCTAGCTCTGTATAGAGCTAGTGGATTTAAATA with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-5.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 8457-9686 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFL01000029.1 Absiella sp. AM29-15 AM29-15.Scaf29, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 8457 31 75.0 33 .A.-...A.T.T......C.A........A.. AGCACAGTCAATGACTAAAAATGATGAACATAA 8521 32 96.9 35 .......A........................ CGGCAAATGGTCAAACATCAATATTTACAAATTTT 8588 32 100.0 37 ................................ ATCATCCTCAAATGATACTTTTGCTTCATCTGTGATT 8657 32 100.0 36 ................................ CGAAGAAAGCAGGTGAATAGCATGTATGCTACACCT 8725 32 100.0 34 ................................ ATATCAATTTACAGATATATTTTTTTGATCAACA 8791 32 100.0 33 ................................ TAAACATTAAGTTCCGATTTATAATTTTTAATA 8856 32 100.0 35 ................................ TTTTACTGCCCCCGTTGACACCTCATGTAATCTAT 8923 32 100.0 37 ................................ TTAGTGCTGTGTCTATCAAACCGCATTCATCCTGTGT 8992 32 100.0 37 ................................ CGTAAAGGCGGCGGCTTGGGTAAGAGACACCGTAGGA 9061 32 100.0 33 ................................ GAAAATTTACTGAGGTCATACTTGTTGTAGCTA 9126 32 100.0 35 ................................ TCTCCATTAGGGTTTGCGTTTTCAACTGAGATTAC 9193 32 100.0 35 ................................ ACCGTTTTTAACCGCATTATCATACAGATTAAATT 9260 32 100.0 33 ................................ TTTATGCAAAGCTGATGGATCTAGCAAGTACTG 9325 32 100.0 34 ................................ TCATCTCCTCGATCTCCATTTTTATAGCGTTCAA 9391 32 100.0 35 ................................ AGGAGTGGGCAAAATCGTATAAAAATGAAACAGGA 9458 32 100.0 33 ................................ TATATTACTGCTAAATCATCATTCAAAGCATAT 9523 32 100.0 34 ................................ TACTTACGTAATGTTTAATGATGATTATGTAATT 9589 32 100.0 34 ................................ CCGTAAGTAAAGCAATAAATGCCCGTTTAAATCA 9655 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 19 32 98.5 35 ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Left flank : CAGTACCCACAGCCAAATGACCATTATTATATTGCAGCATGATATGAGGATCACTGACAAATCCTCTTACATGTCCATCACTATAAGCATCAACCATTATAGTTCCAATTGGTCCATGTCCATTAATATTGATAGTTATTTGCTCTTGTTCACTTTTTAACATGCTACCCATTAAACTTGCTACAGATAATGTTCTACCCAATGCAGCAGCACTTGTAGGCCACATATCAAAACGCCTTCTTGCATCTTCTACCAGATTTGTACTGGCACACATATAAATACGTACACGCTCTTCGCATGCTAGCGCTTTTACTAAATAGTCCTTCATTGTAATCAACTCCAATTCTGCTATTGAAGTATATCATAATTTTTATTGAAATGCGATGAATTACATATTTAAAATCTGGAAGTTTATACAATATATAAAAATAAAGTCCAGCCACTAAAAAAACTAAACTTTATTTTAATTATTATATACACAAAGCTATCTACAAAAAATA # Right flank : CCGCAAAAATATTATTTACTTGCTAACTTGTAACAAATTTCCATCAAATGAAATCTCTCTTTCTTTCAATCTGTTACATATCACTGATTAAGACACACAATTTAGCGCGAATCTCCTAGAGAAAACATGGGAGCTTAATATTCGCAAATCTTAAAATCTTGTTTTCCTATGATAATTATCATCGAACATGATAAATATCTGAAATAACTCTTCTGCTGAAAATTCAATTTTCCCTTGATATTTCTCAACAATCTGTTCAATATTACGGAAACCAAAACCGTGCATATGATGATCCTTTTTATTACTAATTAAACGATCATCCTTTATAATCACTTCATCTTTATCATAAGAATTTGATAAATCAATATAAATAAAATCATCCTTATGTCCAATACTTAAACGAATTAATTTACGCTCACATTTACAAACCGCCTCTAAACTATTATCCAACAAATTTCCAAGCAAAATACATAAATCCATATCATCTAAAATTGCCAGCG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAAATCCACAAGTTCATGAGAAACTTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.62%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : NA // Array 1 26336-25277 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFL01000013.1 Absiella sp. AM29-15 AM29-15.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ==================================== ================== 26335 34 100.0 34 .................................. TGGTCATTAAAATTTTCTGTGCCTGATTGTCCAG 26267 34 100.0 35 .................................. ATTTCGTGAGCTGTATACTCGTAAGAAACCATAGC 26198 34 100.0 35 .................................. GAAAACCTCTGCTGACGGAGGAGATGGTGTCCCCG 26129 34 100.0 34 .................................. TGATAGTAGGTGGAAATTATGGTAGCACGGTAGA 26061 34 100.0 35 .................................. ATTTTGACCAATAATGCTAAAACGCCACCAAGTAA 25992 34 100.0 33 .................................. ACACTATGACGGAGACGGCCATAAAAGCCGCCT 25925 34 100.0 35 .................................. AAGAAAGTAAAAATGTCGCTCCCATCCGACCAAGG 25856 34 100.0 36 .................................. TTTTTTAGGTACGATACACACTTGTATATAGTCATG 25786 34 100.0 33 .................................. TTCGAATACGTTTCCCCATTGATTACTATTTAA 25719 34 100.0 34 .................................. AAGTATGGCAAAGAGGTGTTTCAATTGCTGTTAA 25651 34 100.0 35 .................................. TATGATAGACCAACCAAATAATCCAAACTGCCAGC 25582 34 100.0 34 .................................. GATAAGATTAAGATTTTTTTTATACATCTTAAAG 25514 34 97.1 35 ...................A.............. TTTACTTCTAATTGCTTTTGGTTTACAGTTACTTT 25445 34 97.1 33 ...................A.............. TGTTATTCCTGATTTTTTAATAAGATAAAAAGA 25378 34 97.1 34 ...................A.............. CTATTTTAAAAATACCATCTATATATATTGTTTC 25310 34 82.4 0 .................G.A.....A..C...CG | ========== ====== ====== ====== ================================== ==================================== ================== 16 34 98.4 34 GTCATTATGCTATATGCATGATGTGGATTTAAAC # Left flank : AATATAAATATAGTATAGGAACTTATTTTTCATTGCTGGCATATGCAGATGAACCAATTCAGCATGCGTGGTTTCTATCACCAATTGTGAATATGCAGGTTATTGTAGAAAATATGATGGAATAGTTTCATATAGATGAAACACAATTAGAAAACAAGAGATAAACCAATTTAGATATGGTCTATTCGGATATCCTTTATGGAGAAAAGAATGATATGTGTGATTGGTTGTTCACAAATTTCATTGTGATTTACAAGTCATGAAGAATGGAGAGCATTATTTCCAAACATCTCAACAGCTTGCATATCATACTAAATGCTTAAACAATCATCTTATTTAAACGCTTGCGAACCTTAAGCTCACATGATATTCCTAGGACATTCGCGCATGGAGATATCTTATTTTGCACTATATGTATCGAAATGAAAAAAAGATTTAAAATCATGCGTTGAAAAGCAAAAAAAATTGTTTCATTAGCGTATGATTCTAACAATTTTGCG # Right flank : ATTAGCACCGGTGCTAATGAACCATTTGCAACTGTTGTTATACTTTATACGGCAATGATTGAAGCATTGTATCGTTGTAAATGTCTTGAATTTAAACTAAAAAAGATATCACATCCGATTTGGATATGATATCTTCAAAATGTTTAAGCTTTACTATCTGCCAGAACGGTTTTAGTTTCTGGCTTTTCTTCTTCATTGAATAACTTTTTACCTGAACAGAAGGTAATCATTAAGCCTAATGCCACAAGTAGAACAGCGAAGATTAATTGTAAACCATCTGTCATAAATACGAAACCACCATTAACAAATAATTTCAAACAGATATTGTAGATAGATAAACCAAGTGATGTCATAGTACAAATTAACATCAGGGTCATAGGTACATATAACATCCATCCTTTTCTTCCAGTGACTTTTAAGAATACAGATAATGATACAAGAACCATAGCGCCTAATAACTGGTTAGCACTACCGAATAATGGCCAGATATTATTATATCC # Questionable array : NO Score: 3.18 # Score Detail : 1:0, 2:0, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTATGCTATATGCATGATGTGGATTTAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.65%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 86453-85750 **** Predicted by CRISPRDetect 2.4 *** >NZ_QVFL01000013.1 Absiella sp. AM29-15 AM29-15.Scaf13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 86452 33 100.0 35 ................................. TTTTTGTGTGATACCTTTAAATCCTAGTAAGTTTT 86384 33 100.0 33 ................................. TTTTTAATATTTTCACTGGTATCTGCTTATGGA 86318 33 100.0 35 ................................. AACTATAGTTTACGATAAAAAACAAGAAAGTCAAT 86250 33 100.0 35 ................................. CTTGAATAAAATCATTTGTTTCTGAGAAACTCTCT 86182 33 100.0 34 ................................. ATGAATAGGTGTGATTTTAACGATAAATTTATCT 86115 33 100.0 35 ................................. TCCCATAATGATAATGTTGGTTGAGATATCTTAAA 86047 33 100.0 32 ................................. TCGATCTTTTGTCATGGATATATCTTGATTCG 85982 33 100.0 33 ................................. AATACGTTTGTTTGCTGATCCCATGCAAATCCT 85916 33 100.0 35 ................................. ATTATTTTTCTGTTTTTCGCTTATATAGGAACACA 85848 33 100.0 35 ................................. TTTAATGCCTCCTTACTTTCCGGATTGCGACAACG 85780 31 87.9 0 .......................--..G..C.. | ========== ====== ====== ====== ================================= =================================== ================== 11 33 98.9 34 GTCTAGCTCTTTTATGAGCTAGTGGATTTAAAT # Left flank : ATAGTGTGATATAGACGTGTACATTACAAAAGATACTTCTTACAAGCGACCAGTAATCAATGATTTGTGTTAGCTAATTATGGGAATACGTGAAAAGATGCATGATATTAAATTAAATTTGAATAAAAATATATAGTTTTAATTTACATTTACAATATATATTTATATGGGTATAATTAATTTATCATAAAGATGCAATAAAAAAATTATAATGAAAGGTTGTGATGTACTATAGGACGATACACGATGATTAAACAAATATCCTTCATTTAACTATGAAAATAAAGTAGAACATATAATGATAAAATCTATTTTTAAATTAAAAGATGTATTGATTTTGTAGAAATGCGAATATGAAGCTCCCATGAATCTCCTGGGAGGTTCGCGCAAAAATGTATTATATTTGGGACGGTATGTAACAATTTGAAAACATCAACGCTGATTTAAAAAGATTTTTTAGAAAAATTGTTACATTAGTTTAAATTTGATATACTTTTGCG # Right flank : TATGTAGTTTTCTTTTAAAATTCTGTGCGTTTAGTTCGATAAGAGTATTACAGTCCTTTTCTAATATTTATAAGAAAAGCACCTCCAATTTACATAACTAACCGACAACAGTTGTCTTAAACTGTATGATTGCTGTTTCAAGGGGAGGGGTATTTATAAGTTAATGTATTACCTGTCGGGTAGGTGTTGTTATACTGCCATTGACACTAAACCTTCCAGTATTATAAGTCATACCTTTTCTTTCATACGTGATGAATGCCGTTCTTTTTTTATAATGATTGTAATCGTCATGCACTTTTTAGAGTAAGTTATGAAGTGTGTTTATCAAATGTAAAAAAGTATGCTAAAAATTTATAAAAAGATCAAAAAAAGTATTGCATTTTTTTAACAGGTTTGTTATTATATTAGAGCTTTGATGCCGACTTAGCTCAATTGGTAGAGCAACTGATTTGTAATCAGTAGGTTGGGGGTTCAATTCCTCTAGTCGGCACCAGCTTGTT # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTAGCTCTTTTATGAGCTAGTGGATTTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.00,-5.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //