Array 1 141345-142349 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVU01000039.1 Saccharopolyspora rectivirgula strain DSM 43113 contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 141345 29 96.6 32 ............................T CCCCACCACCAGATGCAACGGAGGAGCTAGTC 141406 29 96.6 32 ............................C CAGATCTGGCGAGGTGACGCGGCCGGCCGCGG 141467 29 96.6 33 ............................A CTGAACATGACCGCCCGCCGCTGCTGGCGCAGC 141529 29 96.6 32 ............................A TCACCTGGATAGGAGGTGTTTCCGGTGCACCC 141590 29 96.6 32 ............................C ACCTGATGGGGAGGGTTTCCCGTGTCACCCAT 141651 29 100.0 31 ............................. GACAAGCGCTTCGTCGCTCGCCGCGACAACC 141711 29 96.6 32 ............................C GGTCTTCGGCAGCCCTCTCGAGTACTCGCGTG 141772 29 96.6 32 ............................C AGGTCGGTGCCGAACGGGGCGCCTTGCCAGAT 141833 29 100.0 32 ............................. TTTGCCAGATAGACGTTGTTTCCGTTCCTCAC 141894 29 96.6 32 ............................T GCCGGTTATGCGCACTAGATCGATCCAGGGGC 141955 29 100.0 32 ............................. TCGTACATGCTCCGGCTGGCAAGGGTGCCGCC 142016 29 96.6 33 ............................A CTTATCCAGTTCCCTGGCGGCGCGGAACCGCAG 142078 29 96.6 32 ............................T TCGCCGGATGAAGTACTTCGAGAAGATCGGGT 142139 29 100.0 32 ............................. CGGGTCGCGGTGTACTTCACCAAGCATGGCGC 142200 29 100.0 32 ............................. TTCAGACGAGCTTGCAATTTTGCAGCTCATCG 142261 29 100.0 33 ............................. CCCAAGGTCACACGGCGAACCGCCTCAAAGGCG 142323 27 93.1 0 .......................--.... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 97.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : AACCCTCGAGCTGACTGCCGCGGGCTATGGCCGCCATGCGGCCAGTTCGTTCGGTGCCAGGGGAGTTGGATCTGCGGCGTCGCACTCGCTGGAGGACTGCGGGAGAGCACTAACCAATGGTGGTTGGCTCCCGCATCGTCGCTTTCGACTGCGAGTTCACCGAACCTGCTCGATGCAGCGGTCGGTGCCCGAGCGTTTGAGCTTGTGAAAAACACGATTTCAAGCGGCTGTCCGGGCCAACGCACCTGTGCGGGTAGATCTTGAGCCACCCGTTCGACAGAGGTGCAGGTTGGCGCTGCTCCGTTGCGTGCTGAATTTTCTGCTCGCCGAGGTGCTCCCCTGCGTGCCGGGAGTCGTTCACCTTCGAATCCACCGGCGGCAGGTGCAAGTACTCTTCCCACACGTGGGACAGGAGTGCGCTCCGGAGGCTACCTTCCTGGCGGCGGAACAAAGTGAATCTATTTTGCGGTGTGGGCTGCTATAGTCCCTGGTCATCAAGT # Right flank : GCCTCGGAAGCTGAGGCTGTGCCCTGTGGTGCGGAAGGTGAAGAGGCTGCAGGAGGTCAGGAGGTTGCTGAGGTCCGTGATGCGGTGAGCATTCCGCGGTCGCTGCTGCTCATCTGGCTCCGGCACTGGTCGAGGCCGCGGGTGTGGGTCGTTCAGTCGTCGGGCAGTAGCGCCAAGAGTTGGCGGTGCGTGGTACTGCTCAACAGTTTGCGATCCGCTCCTGGTGAGGGTGGTCCTGCTGATTTCGGCTTTTGGGCGGTTCCAGCGGTGCAGGTCCAGATCGGGGCTTGCACTGTACTTCTGGCGCTAGTTTTCAACGGTGCCTCCCTCCTGCTCCTCCCGTGCAGGGGCACGCTTGGATCGCAATCCACAAGCGCATCAGCGGGCCTCCACTTCGACGCACTCGGTGGCTGCGCTGCTCACTCGCTCGTTGCGGCGAAGCGGATTCTGATTTCCCCCAGCCGATGAGCAGCTCGGCGGCACCAGTACCCCGGCCGGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.53, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 147181-146907 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVU01000039.1 Saccharopolyspora rectivirgula strain DSM 43113 contig00040, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 147180 28 100.0 33 ............................ TGCAGATGTCGATCGAAACCTTCCTGCACCTCA 147119 28 100.0 33 ............................ CCCTTTGAGGTCGGCGATGCGCAGTCGCACCGA 147058 28 100.0 33 ............................ CGAGGGTCGGCGACGTGCCCAGCGTCGGCAAGG 146997 28 100.0 35 ............................ TGCGCGCAATCGCTTCATGCTCAGGTAGCTGATGA 146934 28 75.0 0 .......TT......T.G.A.....T.G | ========== ====== ====== ====== ============================ =================================== ================== 5 28 95.0 34 GTCTGTTCCGTGCGCACAGGGGTAGCCC # Left flank : GGGTTGAACCGATCGATTCTCGACACGTCGCCGGCAGAGTTCCGACGACAACTGCAGTACAAGGCCTCTTGGTACGGGGCCACGGTCGCTGTTATCGACCGGTGGGCACCGACCAGTAGGACGTGCTCGTCCTGTGGGGCAGTGAAAGCCAAGCTGTCTCTGGCCGAGCGCACATTTTTTTGCGAGCACTGCGGGATGGAGTTGGACCGCGATATCAACGCGGCCCGGAACATCCTGGCGTTCGCGCAATCCGCCTACCCCGGGGAGGGGAAGGCGTTAAATGCCTGCGGAGGCTCTGTAAGTCCTGGATCACAGTCTGTGGTTCAGGCTGGAGCTGATGAAGCTGGCAGACCTGCGCGGAAACCGCGCAGGTCATCCCGGGGGAGTGATCCCCCGGCTACCCCCACAACACGCGCATAACTACAGAGCAGGACTTGGGCGGGCCAGCGAAACTAATGCTGTTTCGCAGTTCAGACGTCTAAATCCCCAGGTCACGAAGT # Right flank : CCTCCGCGGTAAATCCTGGCGAGTGCCATGATGGCGGGCCGGGTGCGGGCGGCGGATCCGTCGAGGTAGGTCTGGCTGGTGGCGATCGACCTGTGGCCGAGTTGGGCGGCGATGACGCTGGCGTCGGCTCCGGCGTAGTCGCGGGCGTGCACCGCCCAGGAGTGCCGGAGCTGGTGCGGGTGGATGAGGTGTCTGCCGCGGCCGCCGCGGCCGTGGTTGTCGGACCACAGTGGTGCCAGCGCGTCGTGCGCCAGCCGCAGCTCCTCGGTTTCGGAGTCCGGGCGGGGGATGGCGGCGAGGCGTTGGAGTAGGTGGCGGATCTGGTCGGGGTGCAGTCGCTGCCCGCGATCACCGGTGATCAGTGGCTGGTCGGCGCGGTGACCAGCGTTGACTTCCCCGAGGCGTGCCGGGGTGGCAGAGGCCTCCGGTGGCTCGATGCGCCCGGAGGTCAGGTAGGCCTCCAGGATGTCGGTGACTTCCGGCGGCAATTCCACGGTGCG # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTGTTCCGTGCGCACAGGGGTAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.90,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 153683-154920 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVU01000039.1 Saccharopolyspora rectivirgula strain DSM 43113 contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 153683 28 78.6 141 .....T......C.G...A..AC..... GAGCACCCAGTGACGGTAACGTTGCCTCCCTTGCTCCCCGCACACGCTGAGCAAGGACGGGTTTTGATGCTGCCTGCTTGGCGGCGGCGCAAAGTGAATCTGTTTTGCGGTGTGGGCTGCTATAGTCCCTGGTCATCAAGT 153852 28 100.0 33 ............................ CAGGAACGCGCGGATGGCCACGTACAGGCGAAA 153913 28 100.0 33 ............................ GCAGTCAGTGTCGCGCGCCACCGACGCGGCCGT 153974 28 100.0 33 ............................ CTGCGGTTTCACCAAAACATGAGGGGGTTGAGG 154035 28 100.0 33 ............................ CAAGCTCGCCACCGCGAGGCCGCGGGGGGCTGT 154096 28 100.0 33 ............................ GCAGGCCGAGAAGCTGGGGCTGAAGTCGCCGAA 154157 28 100.0 33 ............................ TCGCCGCAGCAGGCGTCCGTCGTCGATGATCGC 154218 28 100.0 33 ............................ CGATCGGCTGCAGCCAATCGGGCCGCTCATCAA 154279 28 100.0 33 ............................ CCAGTGAGCACCCAGCACGACACCCAGTACGAC 154340 28 100.0 33 ............................ GGAAGCCGCGGTCCCCGTTGATATAGGTCCACA 154401 28 100.0 33 ............................ TTTGGTGAGCGAGGGGGCCTCTTGCCCCTTAAC 154462 28 100.0 33 ............................ GGCGATCAACGACACCCACGGGCACCGCTTCGG 154523 28 100.0 33 ............................ TGCAGGCGACAAGGCGCAGCAAGGGCGACCCCA 154584 28 100.0 33 ............................ ACCAGCGCAGCAGCCGCCCGTCGTCGATGACCG 154645 28 100.0 33 ............................ GACTTCTGACCGGCTCCGCTGGGCGTAAAGGTG 154706 28 100.0 33 ............................ AAGGTATGCCTCTGCTGCAGATCCAACCAAGAT 154767 28 100.0 33 ............................ CAGCACCGCCACCCACGCTGCCCAGTTCGCACC 154828 28 92.9 32 .............G...........G.. GTCGGTGGTCAGCCACCGACGGCTGGACTCGC GGGA [154845] 154893 28 75.0 0 .........A..GTC.......AT...T | ========== ====== ====== ====== ============================ ============================================================================================================================================= ================== 19 28 97.2 39 GTGCTCCCCGCGTATGCGGGGGTGATCC # Left flank : CTGTGGCGTTGTGCACCTCTCACCGCGCAGGAGCGGGGTGACAGTAGAGACATGGAGATGCCGCACAGCGGCCAGGGGGATGTGCACCACCAGGAGAGAACGGGCGATCCGGCCTATGTGTACGCAGGTGAGTGGACCGACCGCCAGGGGGTAGTGCACATCCGCAACGCCAGTACAGGCTGCACCTACTGCGGCCTGACGACCAGTTCCCGCAGCACCACACACTCGGTCGTCGGCTGCGACCAGTGCGTTGCGATCTCCATAGGCGCCTACGCCCGCCACGACTGTGGTCGGGGGTGCTGTGGAGCGGACTAAACCCCGATTACCGCGCCGGCCGGATACATCACCGTGCTTTCCGGGGATTTGCAGCAGCTCCCCTCGTACTCGCAGAACTTGCAGCCGGCGGCGACGTGGTGGCACCAGCATCGCCCCTCGCTCACCGTCCTGCAGCAGGTCCTGGAGGGGATGAAGCACCTGTAGGCCTCGCTGGCGGAGAGGTC # Right flank : TCCCTTCACGAGCAGATTGAGACCCCCTAATTGGCGAGGTTTTTGTCCTTTTAGTCCTAATAGCCTTGAATGCGGGTGTCTGTTCAGGGGTCGGGGTAGGTCTGTCTTGCTGCTCCGAGGCCCAATGTGCGAGAAGCGCTTGATCAACTCTTCAGGGTCGATTACCTTTCGTGATCGCGCGATTGCTGAATCTGCTAGTTGTCCATGGGGGTTCGGTTTCATCTGGGGTGCCTGGGGGATCGGGGAGAGCTCTTTGTCGGTGCTCTGTGCTCAACTCCGAACAGGAATGCCACCGCGGTGGGGCAGATGGTTCGCGAGCACGATGAGGTAAGGAAGAAGATTGGAGTTGAGCGAAGCGGCCCGTTCGGTGTGGGCGAAGTCGACCGCTCGGGACGGGAGTTGGTTGCCGCTGTGGCAGCACATGGACGACTCCGCGGACATCGCAGGGCTGTTGTTCGACCAGTGGCTAGCTCCCCGGATCGTCCAGCTGTTCGCCGACG # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:-0.54, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTATGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCATGCGGGGGTGATCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.64 Confidence: HIGH] # Array family : I-C/E [Matched known repeat from this family], // Array 4 164531-165047 **** Predicted by CRISPRDetect 2.4 *** >NZ_JNVU01000039.1 Saccharopolyspora rectivirgula strain DSM 43113 contig00040, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 164531 29 96.6 32 ............................C CGATTGCTGTGTCGGTACCTGACGGAGATGTA 164592 29 100.0 31 ............................. TTCGTTCCACGGGCGTGCGTCTCCCAAGTGT 164652 29 100.0 32 ............................. TGGTGTCGGTTCGGAGAGCGCCTGCCGGTGCT 164713 29 100.0 32 ............................. GCTGTCGAGCCCATTGCCTCCGCCCGCACCGA 164774 29 96.6 32 ............................A GAGCTGGGGTGTGACGGCTACGTCCGGGCCAT 164835 29 96.6 32 ............................C CACATTCGCCCGGCCCGCCCCGTACAGGAGGC 164896 29 93.1 32 ............T.T.............. GTTTTCAGCCACGGCACGTGGTTGCGGTACTG 164957 29 93.1 32 ............T.T.............. TTGTGCGACAAGGGAAGAAGGCGGCTGTTGCC 165018 29 82.8 0 .......T..T.............GG..A | A [165035] ========== ====== ====== ====== ============================= ================================ ================== 9 29 95.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCG # Left flank : ACACTTGACCCGGTGGCTGCTGGAAATCAGCCCCGGGGTTTTCGTCGGGCACATCTCCGCTCGGGTGCGGGAGGAGATGTGGCGACGCGTCGTCGAATTCGTGGGTGACGGGCGAGCGATCATGGTGCACTCGAAGCACGGTGAGCAGCGGCTTGCCTTCCAGGTCCACGGGCACGACTGGACCCCGGTCGATCACGACGGTGTCGTGCTCATGCGCCGCCCGGCGGGTTCGGAGCATGTTTCCGACGAGTACACCGCCGGTGCGGCTCCCTCATTCAGGCGGTGGAAACCACCGGGCTCCAGCCGCGCTTCGGGCATCAGCTCCGAAGCCGTGTGGAAACGCCGCGAGAAACGGCGGAAGTTCAAACGCAAGTAGAGCTCGTGCGGACGGCGGGAGGAGGTGACCGCGCGAAGCGATGCCGAAGCGGCAGGCTGACTGGCAGAGGCACAAAGTGAAGCTGTTTTGCGGTGCGGGCTGATATATTCGCTGGTCATCAAGT # Right flank : AGCACCACCACGTCGTTCACCATTGCTGGCTTTGGAGTTCCTCGGCGTTCGGGTGGTGGGCGATGGCTTCGGCGAGTCGTCGTTCGGCGGTGGGCGCGTCGGCGGCCAGCGCGCTGGCCATCGCTCCGCCCTTGGCGAGGGGCACGAGCGACCACCACTGCCCGCTCGACGACTCGACCGGATCGTCGTCCCACACCACGGTTTCGGTGGCGATCACCCGCACCCCAGCGAGACGCTCGACGCTCGTCTGCGGCCCGCCGATGTCCAACCGCTGCCGCAGCAGCGGTGCACCCTCCCGCGAGAACCGGGTCGTGCTCACCACCGACCCCGGCTGCTCGCCGTGCCGGCCGAGCACCAGCGTCTCCCGGCAGCGCGCCCGGGCGTCCGACGACAGTTCGACGAGCAGATCCGCCCGGTGATCAGCACGCGAACTGACCACCGCGGGCTGCGGCAAGTACTCCACCACGCCCCCGTCCGACACCTCGATGGTCACAGTGGAC # Questionable array : NO Score: 5.62 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.59, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCG # Alternate repeat : GTGCTCCCCGCGTATGCGGGGATGATCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //