Array 1 1911-844 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQK010000046.1 Klebsiella pneumoniae strain RGF4-1 NODE_46_length_17768_cov_278.612911, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1910 29 93.1 32 ............TG............... TAACTTTACCCCGGATCCTGATGAACCTGTAC 1849 29 93.1 32 ............TG............... TCGTGTTGTCCACGGTTACCCGCTGGCTGGAA 1788 29 100.0 32 ............................. AGGTATTTGACCTCATCCAGAAAGGCACAGAC 1727 29 100.0 32 ............................. GCACCCTCACGGATACCTTTTGCACAGTGTTA 1666 29 93.1 32 ............TG............... TTACCAATGGGGAAAAATCTTCATTTGTAAAT 1605 29 96.6 32 .....T....................... CGAAAACGGCAACCTTCATAAAAACGTCTTTT 1544 29 93.1 32 ............TG............... CCGAGATTGAGTAAAGCAAAGTAACGGCGGTG 1483 29 100.0 32 ............................. AACAATTTGAAGTTTCTGCGCCAGGTCGTTTC 1422 29 100.0 32 ............................. AGCAGTTCGAGGAATAGTGACAGGCAGTGCAG 1361 29 93.1 32 ............TG............... TTAATGTTTTGTTAATTTATGAGTGTGGTGAT 1300 29 93.1 32 ............AC............... AGCAAATCGAAAATCCGGCTGTTTGAAAAATG C [1295] 1238 29 89.7 32 .............T.A............C CATGAGCCTGCGCACTCTGACGCGCACCTGCT C [1226] 1176 29 100.0 32 ............................. TGAGGCTGCTGACGGAGAATTGGGACCTGTTC C [1165] 1114 29 96.6 32 ..............C.............. CCGACCCGGTGCCCAGGAGAACTGGCTGAATA 1053 29 93.1 31 .............G.A............. TTCCCTGCACTAAGACGCTGGTGGTCGCCAC 993 29 93.1 32 ...C......................T.. CCGGTTCGGATTTTGCGAAACAGGTGCAGGGC 932 29 96.6 32 .............T............... GGCATGAGCGAGAACCACTGCGAGAGTGTGGT 871 28 86.2 0 ..........A.....T......-....A | ========== ====== ====== ====== ============================= ================================ ================== 18 29 95.0 32 GTATTCCCCCCGCATGCGGGGGTTATCGG # Left flank : GATAAAGACACCAAAGCTGAGCTTCAAATCAAAGTACGGGAGCTCGATGAAAAAATTCAGGCCCGCAAAGATCAGAAGCAGGAATCTCGCGAGTCAATTCGCCGCCCGATTGACCCGTATGAAGCGTTTATCACCGGCGCAGAACTCAGCCATCGCATGAGTATTAAAAATGCGACTGATGAGGAAGCAGGGCTTTTCATTTCTGCATTAATCCGCTTTGCAGCCGAACCACGTTTTGGCGGTCATGCGAATCATAACTGCGGTCTGGTGGAGGCTCACTGGACAGTTACGACCTGGAAGCCGGGTGAACTGGTACCAGTTACACTTGGAGAAATCGTCATCACACCGAATGGTGTTGAGATTACCGGGGACGAGTTGTTTGCTATGGTAAAGGCATTCAATGAAAATCAATCTTTTGATTTCACTGCCCGCTAACTCCAAAAGCTGGTGGATTTTAGTGGCGCTATTTAATATTTTATAATCAACCGGTTATTTTTAGA # Right flank : CATAGAAACCGCAATGGTGGGGCTTTTGTCATGTGCCCCTACAAGCAGATGGGACTTTTTACAATCAAGGAAAGTTACTTTCCTGGATAACCCACTTTCTGCCATCTTTTGTCTCAAAGGGTACTCCCACCGTGGCAGGTGGGAGGGGAATTTGAATTGACGCGATAGCGTTAAAGGAACATTTAGCCGCGCTGGTGCTGAATGTAGCGCTTTACGACTTCCAGCGGTGCTCCACCACATGACCCAACAAAGTAGCTGCGTGACCAGAGAACAGGCTTACTGTACGCCTCCCGCAAATCCAGAAATTCATTCCGTAGCCGCCGACTTGTGACGGCTTTCAGGCTGTTAACCAGTTTTGACAGTTGCACAGTTGGTGGGTATTCGACCAGCATGTGAACAAACAGTTTTAAACAGAACCAAAGCAGACTGGCAAGGTTACAGCGCCAGCTTGCCCGTAAAGTGAAATTCAGTGCGAACTGGAAGAAGCAGAAAGCAAGAAC # Questionable array : NO Score: 5.42 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.41, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCCCGCATGCGGGGGTTATCGG # Alternate repeat : GTATTCCCCCCGTGTGCGGGGGTTATCGG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCCCGTGTGCGGGGGTTATCGG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 95622-93823 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHCQK010000002.1 Klebsiella pneumoniae strain RGF4-1 NODE_2_length_343784_cov_215.752414, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95621 29 100.0 32 ............................. CTACCGGCAGCGCTTTTTAACCGACACGTCGC 95560 29 96.6 32 ............................T GGCTGACGCGCCATCTGTACAGTTGGACTGGT 95499 29 100.0 32 ............................. GAATCGGCCCTGACGGGCCGTTAAATATAATC 95438 29 100.0 32 ............................. CGTTAAGGGCGGCCTCGGCTGTGATTTTTCCA 95377 29 100.0 32 ............................. CAATGTTTGATTGTGATCCTGATGCGGTATCG 95316 29 100.0 32 ............................. CCCACCCCAGCCACCTTTGCCGTTCTGCATTT 95255 29 100.0 32 ............................. ACAGAAACGGATCACGCGCACCCTGATCAACT 95194 29 100.0 32 ............................. CTAAACCCTTTCCCCTGAACGGAGGCGCTCAC 95133 29 100.0 32 ............................. CAGGCAACTATTGAAAGTTACGGCATCTTACA 95072 29 100.0 32 ............................. TTTTATTCATAAAATCAATGTGTTGCATTTTG 95011 29 100.0 32 ............................. ACGTCTTGTCGCAAAGCGGCTTTGACTATCTG 94950 29 100.0 32 ............................. TTTGCAATATCTGCCTGCGCCGCCGCCAACGT 94889 29 100.0 32 ............................. CAACACTGAAAGGCGTTCTGCCCAGTTTCTCG 94828 29 100.0 32 ............................. GAGCTGGAAGACGAGGACACCGGGGAGCGTCT 94767 29 100.0 33 ............................. CCGTAATTTTTCAGACCCGCAATCCCAAAAAAG 94705 29 96.6 32 ............................A AATCGCAAAACGCCCGGGGGCGCTGCGCTCTC 94644 29 100.0 32 ............................. CAGCTAATCCCCTGTCTGTTGGGGTAAGCGCT 94583 29 100.0 32 ............................. GCTTACGATTAGCTGGCTGAGCGATTTGGTAT 94522 29 100.0 32 ............................. GACTTGCCAGTAGGTGTGGAAATCCACGGTAA 94461 29 100.0 32 ............................. CATTCCCGGTGGGTGTTCGTTCACACCACGGC 94400 29 100.0 32 ............................. CGATAGCCTGGCGGTTTAACCATGAAAGAATG 94339 29 100.0 32 ............................. CAAACGCAGATGAAAATTCATGGGTCGAATAC 94278 29 100.0 32 ............................. CTTAACGGTGTCAGCGTTGACGCTGTCATGCA 94217 29 100.0 32 ............................. CCTCCGGATTCATGTCCCATCTGGGCAATGAA 94156 29 100.0 32 ............................. GAGATACCGTTTTAATTCAATACGGCGGCGGC 94095 29 100.0 32 ............................. GGCAAAAAACGGATCCGCCACGTGGAGTGGGA 94034 29 100.0 32 ............................. TCGTTATGAAGTATTGGTCGGGCGTTGGTGGG 93973 29 93.1 32 ........T...........A........ AATATTAATCACACATTATTGCGATTGGCTCA 93912 29 100.0 32 ............................. ACTGATATCACCGAACTGGCTCGGGCCATGAA 93851 29 79.3 0 ...........ATTC..........G..C | ========== ====== ====== ====== ============================= ================================= ================== 30 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTGTCTGCTGGCGAAATTGAACCGCCTCAACCACCGCCGGATATGCTGCCGCCGGCGATACCCGAGCCCGAGTCGGTGGGAGATAAAGGGCATCGAGGGCATGGCTGATGAGTATGCTTATGGTGGTGACGGAAAATGTTCCACCTCGCCTGCGAGGACGGCTCGCAATCTGGCTGCTTGAGATCCGCGCTGGGGTATATGTAGGTGATACCTCAAAACGGATCCGGGAAATGATCTGGCAGCAGGTGATACAGCTAAGTGACGGTGGAAATGTCGTGATGGCCTGGGCGACAAACAGCGAATCAGGTTTTGAGTTTCAAACCTGGGGAGAAAACCGCCGTATACCGGTAGATTTAGATGGCCTACGACTGGTTTCATTCCTTCCCGTTGAAAATCAATGAGTTGGATGTTCTTTAATAATGTGAGATTGTTGTGATAAAGTTGGTAAATTGTTGTGTGCTTAAAAAGCTATTATAAAACAGTAATATATCTTTAGT # Right flank : GTCCACTAACGTTATCGATCCTGAGGGTGGGCACGAAAGCTTGCGGAGAATAAATATCGCTACCTGCCGCTCTAGCGATATCACTGTTTTTTTACCGTCTCCTGGATCGCGCTAAAATCCGGCTCCGGGCAATCCCGACCAAAATTTTCGGCCCATGGGAACGGGGCGCCGTACTTAACATAGCGCTGATACAGGTGTTTGGTTAATTGAGCATCCCGCCCCCATACCCATCCTGTTGCATTACACAGCACGGCAGCATAGGCCTGTGATTTATATGGCAACAGGTCGGCCGCTTTTTCCGCCAGCGTCACCGCCTGCCAGCGATAGTGTAAGAAATGACTGTCCTGTTTTGGCAGGGATCGCTGAACGCGTTGCCGTTCGCCATCACTTATCCACGATGTCACGGCCGAATTATCTTCCGGTCCCTGGTTGTAATAGGGCCATGAATACCCGCCTCCATATAGCGCAAAATCGGGCGCCATCTCATAGCCTGTCAATTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //