Array 1 46623-42689 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVQV01000092.1 Lacticaseibacillus rhamnosus strain 186_LRHA 752_87894_2478961_3_,...,572+, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================ ================== 46622 36 100.0 30 .................................... TCGGAGACCCCCACCTCTTTTATAATCTCT 46556 36 100.0 30 .................................... ATATCGTCCTTGAGGGCGTCCCACCCCGTC 46490 36 100.0 30 .................................... CCACCCCCTGAAAGGTTATCTTTTCTGTCC 46424 36 100.0 30 .................................... TCGGGATAGAGTTTTTCAGCTAATTCCACG 46358 36 100.0 30 .................................... GCAATCAATACAACAGAAGGTCGGTTTGGG 46292 36 100.0 30 .................................... TCAATTGCTGTAAAGCAATTGGGGTCGTTA 46226 36 100.0 30 .................................... CCCCTTGCACGTCTCTGCTTCTTATTGGCG 46160 36 100.0 30 .................................... ACGATGCAGCGTTTCTTCACGGTTTAACTC 46094 36 100.0 30 .................................... TAGTTGCAACATCCGTGCAACAATGATGCA 46028 36 100.0 30 .................................... TCCAACCGCTCATAGTTGAGACGCTCGCAG 45962 36 100.0 30 .................................... TCTGTTGTTCAAAGTGCCGCTACTACACTA 45896 36 100.0 30 .................................... ACTTGGTCTGCCGATAAGTTGGTTTCACCC 45830 36 100.0 30 .................................... TATTGGAAGACACAGCTTGAGGACAAGATA 45764 36 100.0 30 .................................... TTGACTAAAGCCTTTAATAAGCTAACTCGC 45698 36 100.0 30 .................................... GAAGGCGACTACCAAGGTGATGAGTTTAGT 45632 36 100.0 30 .................................... AGAATCACTCGATTGGAAGACCATGTAGGC 45566 36 100.0 30 .................................... TCAATAACTTCGAATCCTTCATCGGTTGGC 45500 36 100.0 30 .................................... CGCACCACTGCGTCCACTCCTTATGGTATG 45434 36 100.0 30 .................................... CCTCACGGCTAATGACTGGATCCCATACGG 45368 36 100.0 30 .................................... TCAAATGCTTTCAGAGACGATGAATCGTCA 45302 36 100.0 30 .................................... GCATTCAGCGTTGGGACAATCCTTCCAGAA 45236 36 100.0 30 .................................... TAATTCGCAGCTAAAACGTGTCACCGAGCA 45170 36 100.0 30 .................................... TAATGTGCCGGTGGGAGCAATGGTGTTATC 45104 36 100.0 30 .................................... AGTAAGGTAGCCAAATACAACCATAAGGGT 45038 36 100.0 30 .................................... AACTATCTAACACGCTATACACAGAATGGC 44972 36 100.0 30 .................................... TTTAATATGCAGGCGGCGACTGATTTATTT 44906 36 100.0 30 .................................... TGATTTGCGAGATGTCGCGATAAGAAGTCA 44840 36 100.0 30 .................................... GACAACAGACTCCGTCAACATCAGTCTTAA 44774 36 100.0 30 .................................... ATAAACATCGTATGCGAATCGTAACAACGT 44708 36 100.0 30 .................................... AGTTGATTGAGGCGCGGATGTACATTCCTG 44642 36 100.0 30 .................................... CGGCACGCTATTCCATCCGATTAGCTACTT 44576 36 97.2 30 .C.................................. CCGTTTTGGTTGCAAAACGAACCGATTACG 44510 36 100.0 30 .................................... AAGGTGTACTGCTTAGCTGACTCCCACGTG 44444 36 100.0 30 .................................... GAAAGTTCTTTAAGTTGACCACTCATTTCA 44378 36 100.0 32 .................................... TCAGGGTGCCGGCTACATATACACGACTTTCG 44310 36 100.0 30 .................................... TCTGGAAGCCCGCAATAGTCAATTGAAGCT 44244 36 100.0 30 .................................... AAATGGTTTGAATACCCTTATCCCGCCATT 44178 36 100.0 30 .................................... TAATGACGCTTAACGCTCTCCGGTTGGTCT 44112 36 100.0 30 .................................... AGTCGTGCAAATCCACGTGCGCGCGTTGCA 44046 36 100.0 30 .................................... TTTTATGATGGGCTTGTATTTTCCCAAATA 43980 36 100.0 30 .................................... GGCAATTTTAAAGCCGTGACCGATGCCACG 43914 36 100.0 30 .................................... CGGGCGAACGCAATGGTCTTCGCTGACAGC 43848 36 100.0 30 .................................... AATAGCAACCGAAAGCGCTCCAGTGTCGCC 43782 36 100.0 30 .................................... GTAGTGCATACCATCATCACGAGTGCCGTT 43716 36 100.0 30 .................................... TGAACACGATGACGTAAAAGAAATGTATGT 43650 36 100.0 30 .................................... GAATGTTTTACCATCGGAACGCGTGGTAAT 43584 36 100.0 30 .................................... AATAGCCAAGTAAATACCGGCACGATTTAC 43518 36 100.0 30 .................................... CAACATCAACAACAGCCGGCAATTGCTGCC 43452 36 100.0 30 .................................... ATGACGCAGTTGGCGAAACCTTTGCACGTT 43386 36 100.0 30 .................................... TCGCTGACATTGACCATCAACGGCGCCGAG 43320 36 100.0 30 .................................... GCGTGTTAGTCGCTTGTGTGGCTTACCGTT 43254 36 100.0 30 .................................... GCGGCATCTTCAAAATCAAAACGACGCGCA 43188 36 100.0 30 .................................... AAGTTCGGCCTCAACGGTGTACCACTTTCC 43122 36 100.0 30 .................................... TGCTAATGATACCTATCCGGACTTGTTTCG 43056 36 100.0 30 .................................... TACAAGGATGGCGGCAAGGTTTGGCAAGAC 42990 36 100.0 30 .................................... GTTGACGCGTTGCGCTGTCGCTGGCCGTTG 42924 36 100.0 30 .................................... AAGCAACATATCAATCAAGCCGAAAAAAAG 42858 36 100.0 30 .................................... TGATGACGAAGTGAGTTTGCCCACCGCTTG 42792 36 100.0 30 .................................... ACTCGGGTATTGACAAAGATCGACGCGGCA 42726 36 86.1 0 .......................AA.C....G...G | T,C [42692,42698] ========== ====== ====== ====== ==================================== ================================ ================== 60 36 99.7 30 GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Left flank : GAGCTGGATTTGGACAAGTTATTTCAACGCTTGATCATCAAAAAGGTAAGCCAATTGATAGAGGATCAGCGGCTGATTGAGTTGATTGAGCAGTCACAACGACTGGCAATGAGCTTATTGAGAGAGCCGTTGTTAAGTGAACTTCCAGTCACAGTCGAACCTGGTGGAAAACTTGAACAAATCATGAAATACTGTAATGTTCATTTTGATGAGGAAGTACTCACGGAGCCTTTCTCGAAAGTTGAAGCGGCAATTCAGACTTTGGCGAAACTTGAGGAGAAACGTCTTGTCATTTTTGCCAACATCAGTCATTATTTAGATGTTGAAAGTCTGAGCAAGCTGTTAGATCAGGTTAAGAACACATCGTTGGAATTACTTCTCATTGAATTTTCAGATGTCGAACGCAGAAAGTTTTTTGAGAAGTGCCAGTATATCTATATTGACAGAGATTTTATGGATAGCCGAGAACTGATTGATTAAGAGGCTGTGTGAAAACACCG # Right flank : ACTCACCTCATAAATGCTATGCAAATCCCAAAAGAAGGCAACAGCAATGTCAAAAGCGAAACTAATCCTTTCGCCAGTATTTTACACTGATCTCAAAGAAATCCGTCACATGTACCAACAGGCGTTCAAATCACTTTACGGCAAATATCAAGATCGGGAAACCAATCCCTACTGTGAATCGTTGAAAAGCTTACAGAAAAAGTTCAAACGGCCTAACAATGCCTTCTTCTTTATAACCGTTGAAGATAAACACATAGGCCTGATTCGCGTTGTAACAGATCTCAAAAATTCGGCAGCCCGTATTTCACCATTTTTAATCTTGCCGTTTTATCAAGGAAAGGGATACGCTCAGCTCGGACTACAGTTGATTGAAGAACAGTTTCCGCTCATTCAAACATGGTATGTAGACACGATTGCGGAAGAACCCAAGTTGGTACATTTGTATCGCAAAGTCGGTTTTCAGCAGCTACCAGATCGGGAAACGACGATTAATGAGCATA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: R [matched GTCTCAGGTAGATGTCAGATCAATCAGTTCAAGAGC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-2.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //