Array 1 156416-154370 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWQ01000002.1 Salmonella enterica strain BCW_6257 NODE_2_length_601553_cov_3.39992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 156415 29 100.0 32 ............................. GCGGACTCCTGCACCTCTTTGAGCCCGTCGAT 156354 29 100.0 32 ............................. TCAGCGTAGGTTGTTGATGTTCCCACCAGCCC 156293 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCCGGATCACC 156232 29 100.0 33 ............................. TTGTCACTGCCCCTGTTGAATCAATACAGCCAC 156170 29 100.0 32 ............................. CAGGTCGGTTATCTCGAAGCTGCCCGCTCTGC 156109 29 100.0 32 ............................. AGGGCTGGCTGACGCGCACCGAGCGCCGCAAC 156048 29 100.0 32 ............................. GGGCTATATCCACGCCAAAGGGCCGCGCGACA 155987 29 100.0 32 ............................. CCAGGCACTAACTCGCAGTATCACTCCCTGCC 155926 29 100.0 32 ............................. GTCATCGCCGGTGAGGTATTTTTTTGGCTTAG 155865 29 100.0 32 ............................. GATAGCGCGGAAATTGCCGAGGTTATAGCTAA 155804 29 100.0 32 ............................. CGTCCAATACGAGCCGAGTGCTCACGCCCTTA 155743 29 100.0 32 ............................. TTGAGGAATTCTTCCCGCAACGCCTGTTTGTC 155682 29 100.0 32 ............................. CCCTGCCCGGCGATTGGATTATTCGCGGTGTT 155621 29 100.0 32 ............................. GGGGCTATTGAGGTTTGCCAGCACAACCTGTC 155560 29 100.0 32 ............................. TTCCACGCGTCGTCGTCAAACCTCGATTTCGG 155499 29 100.0 33 ............................. CAGAACCTGGCTGATGAGGAACTTTCAATCTGC 155437 29 100.0 32 ............................. TGCGATCTAATCTCCTCTGGCGTGACTGTACG 155376 29 100.0 33 ............................. TTGCCAGCCGAGGCCGTTACCGTTCGCCAGAAC 155314 29 100.0 32 ............................. CGCTGAATTCCGATATTCCGCCGTATTGCACG 155253 29 100.0 32 ............................. GGGTTATCTCCCTGCCGTTAAAACGGACGTTT 155192 29 100.0 32 ............................. CTCATTTGCCTTGCTTGATGACCACTGCGGTA 155131 29 100.0 32 ............................. TCATCGAGTACGGAAAATCCGTTTTTATTGTA 155070 29 96.6 32 .............C............... CTACGAAGGCGTCTTTATGGCGCACAGTACCA 155009 29 96.6 32 .............C............... CCGTCCAGCTCCACATGCTCGCCAATCTCCTG 154948 29 96.6 32 .............C............... GTTGGCAGCATGATCGCTAAATCTAAAATGCC 154887 29 96.6 32 .............C............... TTAGCCATCCCCATACCAAAGTTAAAGTCGTA 154826 29 96.6 32 .............C............... CCTGGCAAATTATTTCCTGGATACTCGATATC 154765 29 96.6 32 .............C............... GCTGCGTTCAACAACGGGGAAATGCCGGAGAA 154704 29 96.6 32 .............C............... GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 154643 29 96.6 32 .............C............... CATTCGCTCAATAGCGGCCCGCGTGGCGGTGA 154582 29 96.6 32 .............C............... GGGATTATGTCCTCTAAAGACTGGCTAATCAC 154521 29 93.1 32 .............C...........G... TTGAATACGTCGCGATACCAGTCACTCCGGAA 154460 29 96.6 32 ..C.......................... AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 154399 29 89.7 0 A...........TC............... | A [154372] ========== ====== ====== ====== ============================= ================================= ================== 34 29 98.5 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGCAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173800-172674 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWQ01000002.1 Salmonella enterica strain BCW_6257 NODE_2_length_601553_cov_3.39992, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173799 29 96.6 32 ..........T.................. GAACGAGTAATCTTTGTTTTCCCCGTACCTTC 173738 29 96.6 32 ..........T.................. CGAGGATAGTTGTACCAGGTCAGGCCGCGCTG 173677 29 96.6 32 ..........T.................. CAAAATCAAAATTTCGAAATAAATGATTGGAA 173616 29 96.6 32 ..........T.................. TCAAACGGTTCTGGAACATCTAAAAATACATG 173555 29 96.6 32 ..........T.................. CTGGCTGTCTGCGTGATAAATGCAGAGTGTGA 173494 29 100.0 32 ............................. CAGGAATTGGGGATGTTACCTGAAGATGTGAA 173433 29 100.0 32 ............................. TTCAGAACGATTATATTTTGATTTGTGTTCAG 173372 29 100.0 32 ............................. ACCGAGAGTGACATTTTCCCACTACTGGCTGG 173311 29 100.0 32 ............................. GACGCCATGCGCTACGTAGCGACGCGTGTTGA 173250 29 100.0 32 ............................. GAGAGTCGTGGTGAACTGGCAGTGCTCCGGTG 173189 29 100.0 32 ............................. AGATTGGCTATTGCGGTAGCATACTGACTCTT 173128 29 100.0 32 ............................. ATTTTTTGCGGTTCAATCAGCTCATACCACAG 173067 29 100.0 32 ............................. ACAAAGCCAAGCGCTATATGGCCGGTATTTTT 173006 29 100.0 32 ............................. CGCAATGAACTTTGTCGCGCCGCGAGGCGTGC 172945 29 100.0 32 ............................. ATGGTAAATATGAATTTAATGTCTATCCTGGG 172884 29 100.0 32 ............................. CCATGCTCCAGGGTAGCCAACCTGCAAGTAAT 172823 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 172762 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 172701 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGTGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTGATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTTCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGAGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGTGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //