Array 1 277086-278375 **** Predicted by CRISPRDetect 2.4 *** >NZ_MANH01000022.1 Streptococcus agalactiae strain AB-46 NODE_2_length_322109_cov_64.9675_ID_3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 277086 36 100.0 30 .................................... GATTGCTCATGCAATTCTTTCAAATTATTT 277152 36 100.0 30 .................................... TAGTCACTTGTAACATTTCCATGTTCAAGC 277218 36 100.0 30 .................................... AGCGGATGTCAATAGATTTCTACGAACAAG 277284 36 100.0 30 .................................... CAAGAATTATAGTAGGTTATTAAAGTTAAT 277350 36 100.0 30 .................................... CATGCTTGCTGTTGTAAATTGCCCGACTGT 277416 36 100.0 30 .................................... ATCAACTGCTAGATACGATAACACGACAAC 277482 36 100.0 30 .................................... TACCACCTGATGGATTATCAAGTGATAAAT 277548 36 100.0 30 .................................... TAACTTTAATTCGATTATGTTTTGGTTATC 277614 36 100.0 30 .................................... GTAAGTATTTTAAACGTGACTATTCCTGAA 277680 36 100.0 30 .................................... TTTTTATTATGGAAAGTAATCATTATTTTT 277746 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 277812 36 100.0 30 .................................... TTGTAATATTTGGTAACTCTTCTTTTGTTA 277878 36 100.0 30 .................................... TCCGACCATGTCAGTCCAACGGTATTTTGT 277944 36 100.0 30 .................................... TTCTTTAATACCTGAAATCATTGCGTTGTA 278010 36 100.0 30 .................................... AGGGAGGAGAGAATCAATGCCGAATGCTGA 278076 36 100.0 30 .................................... TGGCGAAAAATGGTATTATCTCAAAGGCAA 278142 36 100.0 30 .................................... TTTTTACCAATGCTTCCATATCGCTTATAT 278208 36 100.0 30 .................................... TACTTGACGAATTGAAGATGACGGAATTTA 278274 36 100.0 30 .................................... TGGTTATACATTTACTAATCCATCAGCATT 278340 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 20 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Left flank : CGAAAAGCCAGAAGTGAAATCAATGGTAGAAAAATTAGCAGCTACTATTACAGAACTTATCGCATTTGAGTGTCTAGAGAATGAGCTTGATTTAGAATACGATGAAATTACGATTTTAGAACTCATTAAGGCACTGGGAGTCAAAATTGAGACACAGAGCGACACTATCTTTGAAAAATGTTTTGAAATTATACAAGTTTACCATTATTTAACGAAAAAGAATCTCTTGGTTTTTGTTAATAGCGGAGCTTATCTTACCAAAGATGAAGTTATAAAATTATGTGAATACATCAATTTAATGCAAAAGTCAGTACTCTTTCTAGAACCTAGAAGACTCTATGATTTACCGCAATATGTTATTGATAAGGATTATTTCTTGATAGGCGAAAATATGGTATAATATTAGTAAAAGCACAGTAATAACAAGGAATCATCGAAACTGAAGTCCTGCTGAGACGAATGGCGCGATTACGAAAGCTCAAAAGAAAATTTTCTACGAG # Right flank : CAAGCTAATTCTCATCTCACCGAGATGGATAGTTTTAGAGCTGTGCTGTTATTATGCTAGGACATCATTGTGGTGTTCTAGTTTTTTGTTATACTGAAATAAATTTTCAGAGAATGTGGGGGAAGGCGGTAATTAGATTAATTCAAGACGTAATTCAGAACTTAGTTGGCCAAGCTAACGAAATCACCCCAATTTATCAGTTTGATTGGGAAACTTATATATTGGCGACTAAAAAATATGAACGTCATTTAGAGGTGTGTCTATTAGTAGAAAATTCGAATTGTTTTTCGGATTCAAAGAGAATGTGTCAATAAAAGAGATATGAAAGGCTATAATTCCAACCTTATGGTTAAAGGGCTAGGTTGTTCTACGCTTTACTTAATTATTAGTTTGACAGCGTTGGTTCTTTTAGTGATTGCTGGTGTTTTCTTTGTCATTAATACTTGCAAGCTTACAAGGAAAGCAGTGGAGAACCTATCCATAATCAACTAACAGCTATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //