Array 1 36060-40828 **** Predicted by CRISPRDetect 2.4 *** >NZ_FQZJ01000002.1 Cycloclasticus pugetii strain DSM 27168, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 36060 28 100.0 32 ............................ TATTACTTGAGCGCCACCGCTGGCATTAATAG 36120 28 100.0 32 ............................ CATCAGCACTTTGCAGATGACCAAGCGATATA 36180 28 100.0 32 ............................ GTTTAATGTGGGCGTACCAACACTCACGCTAA 36240 28 100.0 32 ............................ TATCTTGCGACTTGGCCATGCGAAACACATTA 36300 28 100.0 32 ............................ AATCACTATTTGTACTCGCCCTAAAGCGGTTA 36360 28 100.0 32 ............................ CTTATGCGGAACAATATGATCAACAACAGTAG 36420 28 100.0 32 ............................ TTTATGCTGGCGTTAGCGGCCTTTCTTTTGCG 36480 28 100.0 32 ............................ CAATCGGAAACGTACATCCATCCCTCTTCGTT 36540 28 100.0 32 ............................ AAAAGCCGACTAAACCCTCTGTGACCGGATTC 36600 28 100.0 32 ............................ GCACAACAGCAATCAGTACGCCAAATAAAAAT 36660 28 100.0 32 ............................ GAGATCGCGTTTATCCAAACTTGTACGCATTA 36720 28 100.0 32 ............................ TGTGAGCGTTTTGAGCCCGATGGCGAAATTAT 36780 28 100.0 32 ............................ AATCGCTAAACCGCCAACGTTTTCGACTCTAT 36840 28 100.0 32 ............................ TGTCGTGATGGCCGTTACTTTATAAATATGAT 36900 28 100.0 32 ............................ AGCTCTGTTGTGATGGACCCGCCGGCATCTAT 36960 28 100.0 32 ............................ TGATACTACGCTCATTTAATATCTCCCTTTTC 37020 28 100.0 32 ............................ AGTACATTACCACCAGCGGTATCATCATCGCC 37080 28 100.0 32 ............................ AACAACATCTGGCAAGCCACCAATTTCGTCTA 37140 28 100.0 32 ............................ CTCGCCAGCCATCGTGAATACGACATAACCGG 37200 28 100.0 32 ............................ GAACAGCCTGACTCCCGCCGTTGCATCAATAG 37260 28 100.0 32 ............................ ATAGTAGAGGCTGTGTTCTTGCGCCTGTCGCA 37320 28 100.0 32 ............................ TGTTGAAAATTTAAGTATTAATTCATAACTTA 37380 28 100.0 32 ............................ ATTTTTTGTTTTGTAGCCTTCGATAAGTTCTA 37440 28 100.0 32 ............................ AAACGTAGCATCTGAATCCAGCGCTGGTCTAA 37500 28 100.0 32 ............................ TTGTTTTAATATCACTGTCATAGAACGCTCTT 37560 28 100.0 32 ............................ ACTCAACCGCTGGCTTGACTTCGTTATATACC 37620 28 100.0 32 ............................ TATTGCCCTGTTTATTGGTATATTTATTACTT 37680 28 100.0 32 ............................ CTCAATGTTTTTCTTGGATGCAGCCTTGCCTT 37740 28 100.0 32 ............................ TGCGATTCGGCAAAATTCAGCGCTCTGCCTTC 37800 28 100.0 32 ............................ ATTAACCAGCAGTAACACGCGCTTTTAATTCA 37860 28 100.0 32 ............................ ATTCAAGCTGGACACATTCGAGCAATTAAATA 37920 28 100.0 32 ............................ TCTGCGTGATGTTTTAGCTTGGGTATTTTTTA 37980 28 100.0 32 ............................ TCTTTAACTAAAGCGTTATACGACAACCCTAG 38040 28 100.0 32 ............................ CTTGATTTCCTCCGTTAGGCTCCTTTCTTTAT 38100 28 100.0 32 ............................ GCTGAAGTTTCACGTGTCTGGGGTTGGTTTAT 38160 28 100.0 32 ............................ TACATCAGTTCTTGTCCAATGCGGACAGTATT 38220 28 100.0 32 ............................ AGTACACGGGTTGATTGAGGAAGGGGCCGCTT 38280 28 100.0 32 ............................ CATCACTACTACATCACCCGATGAGATAGCTG 38340 28 100.0 32 ............................ TCACAACGCCTGGCCGAATTTGCCACAACATC 38400 28 100.0 32 ............................ AATCAATTCGCGTTTCTTTGCCCGCCCTATCA 38460 28 100.0 32 ............................ TGTCATTAAGGAACTGGCAAACGAGCAAATGG 38520 28 100.0 32 ............................ TGTGGTTCGGTTTTCTCTGATTCTCGGCAAAG 38580 28 100.0 32 ............................ ACGCACTATTAGTTCAAGCTTCACCAGGGCGT 38640 28 100.0 32 ............................ GAATGTAGATTTAGGTGATGAACGAATCATTA 38700 28 100.0 32 ............................ ATACAACGGCGTCGTATTCTCTGCTTGTTAGC 38760 28 100.0 32 ............................ AGCGTTGTTAATAAATCGATCGCCTGATGATG 38820 28 100.0 32 ............................ TTTATTAATTCCCGCAGGCTGTACAACTAAAG 38880 28 100.0 32 ............................ GGTTATGTTAAGGCTCAAGGCGGCGTTTTTGT 38940 28 100.0 32 ............................ ATCTTTTTCGATAATGGCCGTTGAGCAAATAC 39000 28 100.0 33 ............................ CTCTGAAATATTGTCATCGGGTAAAGTATCGTC 39061 28 100.0 32 ............................ CGTGGAGGAATACCAAGGGACCATTTCATAAA 39121 28 100.0 32 ............................ TCCCAAAACAGCCGCTGCTAACGGATATAATA 39181 28 100.0 32 ............................ GTTTTCGTTTATTTTAAATTCTGCGGATGTTA 39241 28 100.0 32 ............................ ACGCACTAGAGCGAGACTATCAAACAACATGG 39301 28 100.0 32 ............................ AGACGCAGTGTTTGAGTATGATTTATCTACTT 39361 28 100.0 32 ............................ GGAACGCCCCTTATAATGCGAATGCCACCACG 39421 28 100.0 32 ............................ TTTTTTGTCGTCACTTTGTTGCATCATTGCAA 39481 28 100.0 32 ............................ ATACCTAACTTGCATTTCTTCTGCATACTCTT 39541 28 100.0 32 ............................ TAACAAGGTCAGTTATTTACAGTCTCATCAAA 39601 28 100.0 32 ............................ CATCGTTAGTATCATCGCCTGTGTCACAAACA 39661 28 100.0 32 ............................ TTGTTATATTGTGCCATTTTAACTACTATGAG 39721 28 100.0 32 ............................ AATCTACAAGGGAAAGATTAACGTCATGATCT 39781 28 100.0 32 ............................ AATCTACAAGGGAAAGATTAACGTCATGATCT 39841 28 100.0 32 ............................ AATCAGCTTAACCCTGTGCTTGATTGGGTAAA 39901 28 100.0 32 ............................ TATTTATATGTGGTGAACGGACAGGCTATTTG 39961 28 100.0 32 ............................ ATCGCTTTGATGAAGTTTGGCTGGATCCTTTT 40021 28 100.0 32 ............................ ATATTTTCTCGGGCTTAACTTTCCAGCCAACC 40081 28 100.0 32 ............................ TCTTCTGGCGTTGTTGGGTACTCACGCTTCAT 40141 28 100.0 32 ............................ ATTAGCACCTGAATTATCTTTTCCCAGCCCAC 40201 28 100.0 32 ............................ GCCCAATAGTAGATGCACCACCATCGCGCACA 40261 28 100.0 32 ............................ CAAAAGACGAGCAAGATTGGGTTTTAAGCACC 40321 28 100.0 32 ............................ TTTTCCAGACAATTCTAGCTCTACCCTCACCC 40381 28 100.0 32 ............................ AATCACATCATTCTTTACAGTTTGCGGCTTAG 40441 28 96.4 32 A........................... CATGAGAGGAAGGATCTGAGTAAACATGTATC 40501 28 100.0 32 ............................ GTTCGATACTTGGGCACCCGTCCAACTGCAAC 40561 28 100.0 32 ............................ TTGCTAACCATCAATCCCCTCCGTTTATTAAA 40621 28 100.0 32 ............................ ACAATCTGCACTCGTCCTGTTGGGGTTTCTTT 40681 28 100.0 32 ............................ TGCCTTCCGCGTCTACGCTTGTCGTCGTCGTT 40741 28 100.0 32 ............................ TTCGACAAATTAAATGAAGCGCAAAGAAAAGC 40801 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 80 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GCTAGATAGTACTTCAAGTGGACATAAACATAGGCGTTATATTGCTTTTGGTGAGCTATTGAGCAACCCGTTGAAAGGAGATTTTGACTCGTTTGGCTTAAGCAAAAAAGCCACTATTCCATGGTTTTAATCCAATGCCGAAAGCATTGCTATTATTTCAGGTAAAGATGGCTGGAGACTTAAATAAAATATTCTCCAAAATTTCTTTTATGCAGCTTTTGTCGTTTTCTTAAGCGCAAGAAACTTAGGTTCTCTTAAAGTAATCGCTATAAGAGTATAAGGTGGCGTAATCTTAAATGAACTATTATCCGTATGATATTAAAGCAAGTATGGAAAATGTTTTTTATGCCCAAAAGGTAAGTATTTCCAACCAAATTTTTTTAGCTCCTTAAAAATATATAAATATCAATAAGTTAAAGGAAGGCGATTAATTAAAGGGTTGCTTGTTTAAATAGCAGCTAACTATTTGTTATTACTTGATTTTCTTGCTTTATACTCTT # Right flank : AGGTAATTAAATTAAGAGGAGTGAGTGGTGATGAAGCGATTATCCGCACATACAGGCGAGGAGTTCATCAAAGAAGAGGTTGGAGGAGAAGTGAACCTTGCCTTCATTAATCAGCTATAACACAATCGTACCGGTAGTTTAGGGGAATTCAAAGTGAGTAGTTCATTGTGGATATGCATTCAAGTTAATAAAACTACAGTAAAAACTACAGTGGTTTACTCTCCTTTAAAGGTTTTCATACGTCTTTACAATTCCTTTAAATATGTTTAGTATTTATTCTGTAAGGAGTTATAAGTTGTATGCAGTTTTTAGAATAAGTCTAAGACGAACTTTTAATGCGATGGTCGCGCGTTTGAATCGCGCACGACCCACCATTCCAATCAAGAAAAGCCGACAAATTGTCGGCTTTTTTGTGCCTGTAGTTTGGGCTCTGTTGCTTAAACCCAAGGCTCTAACCGTCACATTGTTCCTCAATGCTCTTACTGCATCTCTGGTTAAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //