Array 1 26932-24721 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZFA01000011.1 Corynebacterium argentoratense strain CNM 601/08 c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 26931 36 100.0 28 .................................... AAAAGACCGGTGTTAGCAGGAATACATG 26867 36 100.0 28 .................................... GCAGAGCTTGAGGGGTTTCTTATGGTAG 26803 36 100.0 28 .................................... CTGATCTCCTCCGTATTATCAGTAAGCT 26739 36 100.0 28 .................................... GCGTGAAGAACGCGCCCGTGATTTCTAA 26675 36 100.0 28 .................................... GTGAGGCGCAGTTAAAAACCCGGTTGAT 26611 36 100.0 28 .................................... CATGAGGCGGGCTACTCGGACGGGATGT 26547 36 100.0 27 .................................... GTAGTCCATCCATCACCGCCTTATTAC 26484 36 100.0 28 .................................... ACTTCCTGCATCTGTTCAGCGGTAGACC 26420 36 100.0 28 .................................... CGTTTCTTTGGCCGCTCTGGCTGTGCTT 26356 36 100.0 28 .................................... CCTAACAATAGTGATTGTCTCCACGACT 26292 36 100.0 28 .................................... TACACGTATGGGGATGCCAGTGGGCATC 26228 36 100.0 28 .................................... GATTTCATATACGTAGTTAGCGAACTCT 26164 36 100.0 28 .................................... ATATTGTGAACCTCTCCAGTGTTCTAAA 26100 36 100.0 28 .................................... CCGAATGCTAATGACAGCAGACGACTTA 26036 36 97.2 28 ....................G............... TAGCGTATCTGATACGCAACGTAAAGTT 25972 36 100.0 28 .................................... ATTTGATACGCGGAATGATACGCTCCTG 25908 36 100.0 28 .................................... GGTCCTGGCAACGTGCGCATCGCAGATG 25844 36 100.0 28 .................................... CCGTGGCAGGAAGATTGCTTGCGTGATT 25780 36 100.0 28 .................................... ATGGGGTGTATGGCTACACCGTCGCTTT 25716 36 100.0 28 .................................... TTGGCGTTGTGCTTGCAGCCGCGTTTTT 25652 36 100.0 28 .................................... TGGTCGTACCACTGTCCGGCTACTTTGA 25588 36 100.0 28 .................................... CCGACCTTAGGCGGATCAATACGAATAT 25524 36 100.0 28 .................................... CGGAAACTACGGCGGGGTTTTCGCTTAT 25460 36 100.0 28 .................................... TGAAGCGGATCAAACAACAGCGCCCACC 25396 36 100.0 28 .................................... ACCAAACAATCCTTGCAGCAAATCTACG 25332 36 100.0 28 .................................... ATCTTCGGATCATCGAAGTCAGTAACGT 25268 36 100.0 28 .................................... TCCTCCACATGGGACCGGTAGCAAGAAT 25204 36 100.0 28 .................................... TTCGGGTACTTATCGCCCGTCAGTTTGA 25140 36 100.0 28 .................................... GCATTTGGGTCGATCCACGCCCCTGCAT 25076 36 100.0 28 .................................... TCTACGGACAAGGGGCAACCTCTCTTCC 25012 36 100.0 28 .................................... TGGATTTTGCGGCGGGCTGGCTTAATAG 24948 36 100.0 28 .................................... GTAGAACGGAGCAGACGAACACCGCCAT 24884 36 100.0 28 .................................... CCTGCGTCGACCTTGGCTGCTGCGACGA 24820 36 97.2 28 ...................................T GTGCCGCTATTCGTAAGGGTGAGGGTAA 24756 36 77.8 0 ......................TA...T..A.GGCT | ========== ====== ====== ====== ==================================== ============================ ================== 35 36 99.2 28 GAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGC # Left flank : TTGAGAGTTGATCCCCAGCTTGGCGTTGTGCTTGCAGCCGCGTTTTTGAAGTCTACCAGGGGGTTTGAGAGTTCGATCCCCAGCTGGTCGTACCACTGTCCGGCTACTTTGAGAAGTCTACCAGGGGTTTGAGAGTTGATCCCCAGCCCGACCTTAGGCGGATCAATACGAATATGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCCGCCGTAGTTTCCGGCTGGGGATCAACTCTCAAACCCCCTGGTAGACTTCATATTCGTATTGATCCGCCTAAGGTCGGGCTGGGGATCAACTCTCAAACCCCCTGGTAGACTTCTCAAAGTAGCCGGACAGTGGTACGACCAGCTGGGGATCAACTCTCAAACCCCRCTGGTAGACTACGACCAGACGG # Right flank : ATTAGTCACTGCGAGCACTAGCCTCAACAAGCCTAAGAGGTGAGCAGATGGCAGGTAGCGGGTAGTTTTATACGTCCCATCCTTCTTTTCTGAAGAAGTACTCCGCGATGGCGTGCTTGACTGGGCTATCGGCCACGAAGGTTCCGGCACGTAGTTCGCGCCGGGCGTGGCTCATCGCTTTATTAAACTCCGCCTGCGGGAATTGTTTTTGAACATGCTCTGGTAGTAGTGACCATGCCCCGAAGGAGTGCGACGGCAACCCTCGTTGTGGGCCCAGGAGTGCGCGTAGGTTGTGTTCGCGCTCAAAGTCGGCGACACTTCCTTGCCGCCGGCTGCGACCTGCACCACCACCGGGTGTGCCGGGGCCTGTGATGCTACGGCCACCGATCCCACCGCCACCAATGCCGCCGATACTGCCAGCGGATAGACCCCGGCTGCCTGTACCGAGTGCGGCACCCGCACCACCGATCCCGCCGACACCACGAAGGGATGTGCCCCCG # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.20,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 27108-26956 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZFA01000011.1 Corynebacterium argentoratense strain CNM 601/08 c11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 27107 24 100.0 40 ........................ CTGGTAGACTTCATATTCGTATTGATCCGCCTAAGGTCGG 27043 24 100.0 40 ........................ CTGGTAGACTTCTCAAAGTAGCCGGACAGTGGTACGACCA 26979 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 GCTGGGGATCAACTCTCAAACCCC # Left flank : TTGAGAGTTGATCCCCAGCTTGGCGTTGTGCTTGCAGCCGCGTTTTTGAAGTCTACCAGGGGGTTTGAGAGTTCGATCCCCAGCTGGTCGTACCACTGTCCGGCTACTTTGAGAAGTCTACCAGGGGTTTGAGAGTTGATCCCCAGCCCGACCTTAGGCGGATCAATACGAATATGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCCGCCGTAGTTTCC # Right flank : RCTGGTAGACTACGACCAGACGGAGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCAAAAGACCGGTGTTAGCAGGAATACATGGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCGCAGAGCTTGAGGGGTTTCTTATGGTAGGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCCTGATCTCCTCCGTATTATCAGTAAGCTGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCGCGTGAAGAACGCGCCCGTGATTTCTAAGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCGTGAGGCGCAGTTAAAAACCCGGTTGATGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCCATGAGGCGGGCTACTCGGACGGGATGTGAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGCGTAGTCCATCCATCACCGCCTTATTACGAAGTCTACCAGGGGGTTTGAGAGTTGAT # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGGGGATCAACTCTCAAACCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [43.3-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 291-710 **** Predicted by CRISPRDetect 2.4 *** >NZ_JZFA01000084.1 Corynebacterium argentoratense strain CNM 601/08 c84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================ ================== 291 36 100.0 28 .................................... AGGATTTTGTAGATGGCGGGGCGGCTGA 355 36 100.0 28 .................................... ATAGCGATCCCATGCCAATCGCGGAAAA 419 36 100.0 28 .................................... TCGCCGACTCGGGTATTCCCGTCGTGTT 483 36 100.0 28 .................................... AAAGGGGATTACAAGGGCGGGCTTGGTG 547 36 100.0 28 .................................... AAATCTGGGTGGACTACGACCAGACGGA 611 36 100.0 28 .................................... AAAAGACCGGTGTTAGCAGGAATACATG 675 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================ ================== 7 36 100.0 28 GAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGC # Left flank : TTCAGAAACGAGTTACTTGACCTCGGCTATCAGAGATTGCAGCTGTCGGTGTACGTGCAGTACCTGCCTTCAGGTGCAAGGGCGGTTGGCCTAGTAAAAGCAATTAAGCGGGCTATTCCTCCGGAAGGTGAGGTTCGAATTTTTGCGATAACAGATAAACAGTGGTCGACAGCATTCAGATTTATCGCTGCAGCAGAGTCTGAGGTCGAAGATAAGCCCTCTCAGCTCCAGATTTTCTGATACCAAGATTGAGGAAACCCCCTGGTAGAGATAGGATTTTCTTCCTATCTG # Right flank : GCAGAGCTTGAGGGGTTTCTTATGGTAGGAAGTCTACCAGGGGGTTTGAG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAAGTCTACCAGGGGGTTTGAGAGTTGATCCCCAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA //