Array 1 429148-429845 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTL01000004.1 Salmonella enterica subsp. enterica serovar Newport strain 29 NODE_4_length_656766_cov_27.8324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 429148 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 429209 29 100.0 32 ............................. TCTCGCTGGTTGCTCCAACTCCTGATATGCCG 429270 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 429331 29 100.0 32 ............................. AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA 429392 29 100.0 32 ............................. GGCGCCCGCGTTTCTCGGCTCGGCGCAATATC 429453 29 100.0 32 ............................. GTAGTGCAACGCCGGTGATTTTACCAGTATCA 429514 29 100.0 32 ............................. GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA 429575 29 100.0 32 ............................. ATCATCGGGATTCATTTTGTTGTCCGGGTGGC 429636 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 429697 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 429758 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 429818 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 446515-447947 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTL01000004.1 Salmonella enterica subsp. enterica serovar Newport strain 29 NODE_4_length_656766_cov_27.8324, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 446515 29 100.0 32 ............................. CTGGAACGGCAGTATTTAAAAGGGGTTATTGA 446576 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 446637 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 446698 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 446759 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 446820 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 446881 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 446942 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 447003 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 447064 29 100.0 32 ............................. CCTGGCGATCGCATTTGGGTGCGGGAAACATT 447125 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 447186 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 447247 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 447308 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 447369 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 447430 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 447491 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 447552 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 447613 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 447674 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 447735 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 447796 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 447857 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 447918 29 100.0 0 ............................. | A [447945] ========== ====== ====== ====== ============================= ================================ ================== 24 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGTCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTATAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGG # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //