Array 1 304118-304290 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJU010000002.1 Bifidobacterium sp. LC6 Contig_2, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ============================================== ================== 304118 27 100.0 46 ........................... GTACGGCGGCCGTAGAACCTGTGGCACGTTTTGGGGAGACGGCGGC 304191 27 100.0 46 ........................... AGACGGAAGCCGTAGATGCTGCGACACGTTTGAGAGGTATGGGAGT 304264 27 100.0 0 ........................... | ========== ====== ====== ====== =========================== ============================================== ================== 3 27 100.0 51 CATAGAACCTGTGACGTGTTTTGAGGG # Left flank : CTGTTCGGCCCCGGCCGTGGCGAGGATTTCGCCGAGCCTACCGCCGACGATTGGGCTCGTGCCGCCGACACCATTAGCTATGAGATCTTCACGTGCCTGAGGAATCGCATTCCGCGCCTCTACGAGCACGCTGCTGAGGTGCTGCCACCTGAGGATTTGGCGAAGCTCGACGCGTCGACGCTGCTGTAGCCGACGCTGCTGTGAGGCCGGTTTTCGTGCCGTGAGGTCGGTTTTCGAGATTTTACCGCGCTGAGGACTGCTCAGCGCGGTTTTTTCTCGAAATAAGTGGCATCTTCGAGATTTCACCGCGCTGAGGACTGCTCAGCGCGGTTTTTTCTCGAAATCAGGCCCGTCCTCGAGAATTCACCGCACTGAGAGTGAGTCAGTGCGGTAAATTCTCGGGATTAAGGATTATTTCGAGATTTTACCGCGCTGAGAGGGGAGCGAGGGGGCGGACGTCTTGTAACACGCCGAGAGAGTGTGGAGGCACAGATGGAAGC # Right flank : GGTACGGGGCTCATCGATATCAGTGAAACGGTGGCGGCTGGCTTATGCTGGGCTTATGGAAACAACGCGGGATGGGGAAACAGTACTGACGAACGAGGGCTACAGCGCCTTTGACGAGGAGCGCTGGGCTCCGGAGCCGCCAAAATCGAAATCGCGCACCGCCTTCGAACGCGATCGTGCTCGATTGATCCATTCATCGGCATTGCGGCGGCTTGGTGCCAAAAGTCAGATTCTGATTGCTGGTACCGATGACTTCGCCAGGACACGCTTGACCCATACGCTGGAAGTGGCCCAGATCGGTCGTCAGATCGGAGCATTGCTCGGCTGCGACCCGGATGTGGTCGATTGCGCCTGTTTGGCCCATGATTTGGGGCATCCGCCGTTCGGCCATAATGGCGAGAGAGCGCTCGCGGAAATCGCCAAGAACATCGGTGGTTTTGAAGGCAACGCCCAAACCATGCGTATTCTGACCCGGTTGGAACCCAAGGTGTTTCATCCGG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CATAGAACCTGTGACGTGTTTTGAGGG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [36.7-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 71653-77356 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFEJU010000004.1 Bifidobacterium sp. LC6 Contig_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 71653 33 100.0 35 ................................. GCTTAATCATTTTCAGCGTCCTTCCAGCCCATCAG 71721 33 100.0 35 ................................. TGGCTTATGTTTTGTTGTTAATATCAATATAACAC 71789 33 100.0 34 ................................. GGAACCTATGGGCAAACCCTCTGGTGGAATACAT 71856 33 100.0 36 ................................. TACGACGGAAACGATTGCGTTGAAAATCGCTCCGAA 71925 33 100.0 36 ................................. GTGCAGAGTTCCCACGAGTAGGGAATGGGGGCCATG 71994 33 100.0 34 ................................. TAACCTGAAGCTGGATAAGCTGAATAACGTCGTC 72061 33 100.0 35 ................................. AGCTTGGAGGTGCAAATTACGCCGACTCGCGGCAC 72129 33 100.0 35 ................................. CTCGTCACTGCGTCTCAGAGCATTAGACTCACTCC 72197 33 100.0 34 ................................. CGATGGTTCGATTGAACTGGACGCGACGATTGAC 72264 33 100.0 34 ................................. AATAAGGCCATAATGGATTTGGGTATGACTGACG 72331 33 100.0 36 ................................. ACGCTATTGTCTAAATCCATGCTGAGGCTCCCAACA 72400 33 100.0 36 ................................. TGGATAGTCTCATTGCCAGTCCTTTACTTGGTTTGG 72469 33 100.0 34 ................................. GTTTAGATGGTCTAGGAGGCAGATGTAGACGAGT 72536 33 100.0 34 ................................. GGCTGTGCTGGTGGCCTTAATCATGTTCGCGCCA 72603 33 100.0 33 ................................. TTGATGATTATGTTAGCGATATCTGTAATAGCG 72669 33 100.0 35 ................................. ACGTAATCGCGTCCGTTAATCTGGAAAACGTCACC 72737 33 100.0 34 ................................. AACAGTTCGGGATGAACGACCCTATCGCGGTATG 72804 33 100.0 35 ................................. TGAGCATAATTGACTCCGACTACTGGCAGGTTATG 72872 33 100.0 33 ................................. CCATCCATTATCATCGAAACGCAGGTGAAAAAA 72938 33 100.0 34 ................................. GAGGATTAGCGCTAATGCTACTGTGGTGCTTTTG 73005 33 100.0 35 ................................. AGTATTTATGGAATGCAACCCGCGCCCAAAGGCTC 73073 33 100.0 36 ................................. TATTTGATGAATACACCAGTGTGGTAGACCGGACAG 73142 33 100.0 34 ................................. ATTCATGCTCCGAAAAAAAGTATCACGCTCCGAA 73209 33 100.0 33 ................................. CTCCGGGAACCACCATAGGCTATCCGGCTCGAA 73275 33 100.0 35 ................................. GGGTAGAGGTCGTATCGTTTTGCTTTTTGCGCGTA 73343 33 100.0 34 ................................. ATGTATCGGCAGAAATCACAGGTCTTCGCGTCGT 73410 33 100.0 35 ................................. TGAAATTCGCGGGTGCAGAGCACGCGAATAGGATG 73478 33 100.0 34 ................................. TTGATGATTCGATTGTCAGCTTTACTCCTTTTCA 73545 33 100.0 35 ................................. GTAGCGTGCTCGAAAAACTATCCCATCGTAGCCAG 73613 33 100.0 34 ................................. GGTTCGAAGGTCGCCGTTGCATCACCCCAAAGAT 73680 33 100.0 35 ................................. TTAATTGTTCGTCTCGAATGTCCTCGTTGCGTCTG 73748 33 100.0 35 ................................. ATGTCGGTCATGATGGAGCGGAATTTGCCGAGGTC 73816 33 100.0 36 ................................. TTTGGCGTTACCCGCGTAGGGCACTAGCTCTGCTAG 73885 33 100.0 33 ................................. ATTACGGGGTTCCGTTCGATGTGTCCGGCGAGG 73951 33 100.0 35 ................................. TCCTTCCGTTGGTCGCCGCGCCGGTCGCCCGTCGT 74019 33 100.0 36 ................................. TGCTGGGTCATGCCCTGGCCGCCCTCGTCCTTCGGC 74088 33 100.0 34 ................................. ACAGTGTCGCTGGGAGACCCGTTCGGCTTGGAGG 74155 33 100.0 34 ................................. GAGCAATTCCGAGCCTTATGGATGGCCAGAGGCA 74222 33 100.0 35 ................................. ACGGTGAGCGAGGACTACAGCCGAGGGTATGGCGC 74290 33 100.0 34 ................................. CCGTATTTTCGCGCGTAATATCGTTGAGCCATCT 74357 33 100.0 35 ................................. ACGGTTCCGGCCGTGTTGGGCACCCACTCGAACGG 74425 33 100.0 33 ................................. ATGAATTGGCAGCCCGGTGATTGCGGTCTGAAG 74491 33 100.0 36 ................................. ATGACGTCTTCGGACACGCCGAGACGGGTGAGAGAC 74560 33 100.0 33 ................................. CATGCGTGCCGTGTCGAACTCGGTGGCGCTCCA 74626 33 100.0 34 ................................. ACCGAGGCACGCTATCTCAAATCGCCGGTTAATT 74693 33 100.0 35 ................................. AAAAAAGGCGGGAACGTCGTTCACCTTTTTCTGTT 74761 33 100.0 35 ................................. AATCAGGCCATAATGGATTTGGGTATGACTGACGT 74829 33 100.0 34 ................................. AGCTACGTTTGATAGGGGAGGTAAACAATGGCTC 74896 33 100.0 35 ................................. AGCACGATTGGCGGCACGCTCGCAGACATGGTGGG 74964 33 100.0 36 ................................. CCTGATTATTCGCATGGGAAGGTTCGCGTGCTCGGC 75033 33 100.0 35 ................................. TCTGAGTATCCGAGAGGGCGTGATATCCGTATGAA 75101 33 100.0 34 ................................. TACTGGTCAGGTATCCGGTGGTGCTGTGGGGTGG 75168 33 100.0 35 ................................. ACGCTGAAGCCAATGACTACGGACGTGTATTTCAC 75236 33 100.0 34 ................................. AAGTACAGTCTCAACGATGTGAGCGCGACTGGCA 75303 33 100.0 33 ................................. ACCGTGAGCGAGGACTACAGCCGAGGATATGGG 75369 33 100.0 34 ................................. ACGCCGGGCTGAGCTTGCGCCCACTCACGCCGCG 75436 33 100.0 34 ................................. CCCGTAGTCTATTACGAGGGCGGGAGCGATAACA 75503 33 100.0 35 ................................. ACACTGGTTTTCACCGCGTTGGTGATGGCGTCCGC 75571 33 100.0 34 ................................. TCAATCTTGACAGGCAGATCCAGGAAAGGCAGCA 75638 33 100.0 33 ................................. TTGAAATGGTCGCCCGCGTCCTTGCCGGTTTGC 75704 33 100.0 35 ................................. AACATGAACCAGCCCTGGTATCCGCGTCACCGCAT 75772 33 100.0 35 ................................. CTGTAGTCCGGCATATAGGTTTTCATATGCCTCGA 75840 33 100.0 35 ................................. ATCACCCATAAGTCAAGGTCGGCCAACTCGTACAA 75908 33 100.0 34 ................................. GTCTCGTCGGTTGCCGAACGCGCGCGCCCATCCT 75975 33 100.0 34 ................................. AACAAACGGCTTGACTCATGCCGTGCCGGCGCGC 76042 33 100.0 34 ................................. TTGTTCTTCGTCTTCACGTCGCCGCCGAAGGCGA 76109 33 100.0 33 ................................. CGACATAGCGCGAGGATTGGTCGCGGAAGCCCT 76175 33 100.0 36 ................................. GATATCGTGTCCGCCGCTGGAGATTCAACTGGCCGA 76244 33 100.0 35 ................................. GATAATCAGGGAGGGGAAGCGCGCTTCAGAGTCTA 76312 33 97.0 34 ........T........................ ACTATCGGCCTGTACCCCTCGGGTACTGTGCCGA 76379 33 97.0 35 .............T................... ATCGATGATTGCAAAATCAATGCAGTCAATCACCT 76447 33 100.0 34 ................................. TCTTTCCGAGTCCCCTCGTCAAGCAACCTACGCG 76514 33 100.0 34 ................................. ACTGGCCCTTATGCGATGCGGGTGAGGCTGACCC 76581 33 100.0 33 ................................. CTGTTGTGCTCGCGCTGCCATGAGCAGTACGTG 76647 33 97.0 35 ................................A ATGACCCGTTGCAATACAGAACCTACATTCTGAAA 76715 33 100.0 35 ................................. GATTTTCTCGAGTCGCTGCGGCACGGGGCGTGGCG 76783 33 100.0 35 ................................. AACTAACAAAAAGAAAACCCTCCACTCCACAAGGA 76851 33 100.0 35 ................................. TTCAGCACCCACCTCGCCGAAACCGGAGCCCCCGA 76919 33 100.0 33 ................................. TCGACGGGCACACCGAGGGCGGCAGCCAGACCG 76985 33 100.0 35 ................................. AACGCGGTGCCCAGCAGCGGGAACTTCTGGCCGGC 77053 33 100.0 35 ................................. ACCTGCAAGGTGAGGCGCTCCTTGAGGCGGATGGC 77121 33 100.0 35 ................................. TCAGATGCCGGTGGTGGATGCTGTGGCCGCTCCAC 77189 33 97.0 34 ........................A........ CACGGGCACGAGCTGGAGGCGTGGCTGATCTGCT 77256 33 90.9 35 ............G..C......T.......... TACAAGCCGGTGGCCGCACTGGTCATGGCGGCCAG 77324 32 84.8 0 ............G....-...AT......G... | A [77327] ========== ====== ====== ====== ================================= ==================================== ================== 85 33 99.6 35 GTCACCCTCCTCACGGAGGGTGCGGATTGAAAT # Left flank : ATGTTCGGTTTCGCCGTCAGACTATTTGCAGCTTCGTCATGAGCTGAATGACATCATCGACATGGACAGCGACAGTCTGCGTTTTTATAATCTGGGTGCGAAGTATTCGGATCGTATCGAGAATGTCGGTAAACAACGGCATCTGCCAGTTGATGATGTCATGTTGATATAAGACGGTTCGATGTGCTGCGTATCTTCGTTTGCCTTGAATTTGTTTCTGGGGAATAGGATGCTCAGGAGCGAATGGTGCGATGTATGAGCTGTCATAAAACTAACAGAGGTTCGCACCGCCGTTGGTGGGGCGAAGGATAATCTTTAGGTGATTTGGCATATATTCCCAATATCGCTTGCAGCTTGATAACAAAAGAGTGGTTAGAGATTAGCCCGATATGTAGGATGTGACGTGAGTTTAGGATGATACGAGGAATGAATATTTGATACACTTCAGATATCCATGAACATGTCGTCCAATATGTGGGCTTATATATCTCATGGATGCT # Right flank : TGCCATTGTCCGCACGATAATCGCTTAAGGCCACGTTGCTTGCCTCTAATACTGATTAAGCAACGGCACTTTACCGGCCACGGTATCGGTGGCGGTGTCATGTTCACAAAGTGGACTCGGTTGTTTAAGCCGGATACCCTCACTAGACGTGAATACGATAAGCGATTGATAGGATAAGGTTCACAGATCTAAGGATAGGTGGGCGTTATGGGCTTAAGGGAATTGCGACTGAAACGCGGCTTGACGCAACAACAGCTAGGCGAAAAAGTTGGCATGAGTCAGGGTAATCTTGGTGATTATGAGACTGGACGCCGGCCAATCGAGAACATGACGTTAGGAATGTCTCTCAGACTTTGCGACGCTTTGCGTGTGTCTAATCCGCGTAAGTTGCTGGATGATTCCCCTAAATCCTAGGTCAATCCGTACGGCTGACATTATGTCAGGTTGGGCGAGTGGTAAGGCTAGGTCTCCATTGTTGGAGTGGTGCTATACCGGCGTAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCACCCTCCTCACGGAGGGTGCGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCACCCTCCTCACGGAGGGTGCGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-8.30,-8.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //