Array 1 9457-10883 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPGP01000045.1 Mycobacterium tuberculosis strain 0660T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 9457 28 100.0 46 ............................ TTAAAACCGTGTTGCACTGCAACCCGGAATTCTTGCACGTCGTCAG 9531 28 100.0 49 ............................ CATAGAGGGTCGCCGGCTCTGGATCACGCTCCCCTAGTCGTGTCGTCAG 9608 28 100.0 44 ............................ TTTTTGCCTCATGCTTGGGCGACAGCTTTTGACCAAGTCGTCAG 9680 28 100.0 42 ............................ TCGCAAGCGCCGTGCTTCCAGTGATCGCCTTCTAGTCGTCAG 9750 28 100.0 45 ............................ AACACCTCAGTAGCACGTCATACGCTCTCCCCACGTGTCGTCAGG 9823 28 100.0 47 ............................ CGGGCAGCGTTCGACACCCGCTCTAGTTGACTTCCGGGTCGTCAGGA 9898 28 100.0 47 ............................ TTGCGCCAACCCTTTCGGTGTGATGCGGGTCTGCGCTGGTCGTCAGG 9973 28 100.0 47 ............................ CAGGTGAGCAACGGCGGCGGCAACCTGGCTGACTCCGGTCGTCAGGA 10048 28 100.0 46 ............................ TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGTCGTCAGAC 10122 28 100.0 49 ............................ ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAGGTCGTCAGG 10199 28 100.0 35 ............................ CTTGAATAACGCGCAGTGAATTTCGCGGATCAGAC Deletion [10262] 10262 28 100.0 48 ............................ ATGGGATATCTGCTGCCCGCCCGGGGAGATGCTGTCCGAGGTCGTCAG 10338 28 100.0 44 ............................ TGGATTGCGCTAACTGGCTTGGCGCTGATCCTGGTGGTCGTCAG 10410 28 100.0 49 ............................ TCCACATCGATTTCCTTGACCTCGCCAGGAGAGAAGATCACGTCGTCAG 10487 28 96.4 48 .................A.......... TCGTCGACGATCGCGTCGATGTCGATGTCCCAATCGTCGAGTCGTCAG 10563 28 100.0 45 ............................ TTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAAGTCGTCAG 10636 28 100.0 44 ............................ TGCATGGACCCGGGCGAGCTGCAGATGGTCCGGGAGGTCGTCAG 10708 28 100.0 45 ............................ TTGGAGCGTGTCACCGCAGACGGCACGATTGAGACAAGTCGTCAG 10781 28 100.0 47 ............................ CCTCAGCTCAGCATCGCTGATGCGGTCCAGCTCGTCCGTGTCGTCAG 10856 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================= ================== 20 28 99.8 46 ACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : GCCCTCGACTTGCAACTGCAAAGCCTCGTGCGTGTTATCGAAGCCGGGCACCCGGCGCGGCTCGTCGATATCGATATCACCTCCGAGCCATCCGGAGCCTAAATGCCCACTCGCAGCCGTGAGGAGTACTTCAATCTCCCGCTCAAAGTGGACGAGTCCAGCGGCACTATAGGCAAGATGTTCGTCCTCGTAATATACGACATCAGCGACAACCGGCGGCGGGCTTCACTTGCGAAGATCCTGGCCGGGTTTGGCTATCGCGTCCAAGAGTCCGCATTCGAAGCGATGCTGACGAAGGGCCAGCTCGCGAAACTAGTTGCACGTATCGACCGCTTCGCCATCGACTGCGACAACATCCGGATCTATAAGATAAGAGGTGTTGCGGCAGTTACGTTCTACGGAAGGGGACGGCTTGTCAGCGCAGAGGAGTTTGTGTTCTTTTGACATCATCAGCAGGCATTGTTACCACACGCTGGACGAATTGTCCATAGAGTCGTCAG # Right flank : CCAACCTCACCGCCTGCTGGGTGAGACGTGCTCGCCGCGAGTCGTCAGACCCAAAACCCTGAACCGCCCCGGCATGTCCGGAGACTCCAGTTCTTGGAAAGGATGGGGTCATGTCAGGTGGTTCATCGAGGAGGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [11,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.70,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [51.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 4780-3937 **** Predicted by CRISPRDetect 2.4 *** >NZ_CPGP01000054.1 Mycobacterium tuberculosis strain 0660T, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 4779 28 78.6 44 G.GGTTC..................... TCGGGGAGCCGATCAGCGACCACCGCACCCTGTCAGTCGTCAGG 4707 28 100.0 48 ............................ TTTATCACTCCCGACCAAATAGGTATCGGCGTGTTCAAGTCGTCAGGA 4631 28 100.0 45 ............................ TGCCCCGGAGTTTAGCGATCACAACACCAACTAATGGTCGTCAGG 4558 28 100.0 46 ............................ GCCCCGTGGATGGCGGATGCGTTGTGCGCGCAAGTGTCGTCAGACC 4484 28 96.4 46 C........................... ATTTTGAGCGCGAACTCGTCCACAGTCCCCCTTTCAGGTCGTCAGG 4410 28 100.0 49 ............................ CCGACGATGGCCAGTAAATCGGCGTGGGTAACCGATCCGGGTCGTCAGG 4333 28 100.0 45 ............................ CTGACGGCACGGAGCTTTCCGGCTTCTATCAGGTAGTCGTCAGGG 4260 28 100.0 47 ............................ TAGTACGCCATCTGTGCCTCATACAGGTCCAGTGCCCTGTCGTCAGG 4185 28 100.0 44 ............................ CCTCATGGTGGGACATGGACGAGCGCGACTATCGGGGTCGTCGA 4113 28 100.0 45 ............................ TGGACGCAGAATCGCACCGGGTGCGGGAGGTGCAGCAGTCGTCAG 4040 28 92.9 48 ........AA.................. ACACCGCCGATGACAGCTATGTCCGAGTGACATCCTCCCAGTCGTCAG 3964 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================= ================== 12 28 97.3 46 ACCCAAAACCCCGAGAGGGGACGGAAAC # Left flank : CCCGCCGGTCGAACTCGAGGCTGCCTACTACGCTCAACGCCAGAGACCAGCCGCCGGCTGAGGTCTCAGATCAGAGAGTCTCCGGACTCACCGG # Right flank : TACGACGACTGGGTCGCCACCGCGTCTGTTGACCGGCATTCAGGATGAGCATGATGGCGGCGTTGACGGTGAGGACGTTTGGTCATGAAATGACCCCGCCGGGAGATGTCCGGCGGGGTCGGTGGTGTTCGGGGTGTCGGTGTGGTGTTCAGTCTGCCGTGACTTCGGCGATGGCGGTGCGGGTGGTGGATTCGTCGACGATGGCCTTGTCGGCGGCGAAGGCGGCGACGAGGGCTTGCAGGGCGAGGTTGTTGACCGCGCGGGGGTAGCCCCGGCTGGTCTGGTGGATCAACCCGATGGCGTCGTCGGAGAACAGGGCATCGTCGCGTCCGGCTAGCTTGAGGTGGTGGCGTAGGTAGCTGCCGGTGTTGGTGTCGGTCATGGGCGGCATGGCATATCGGAGTCCGATGCGCTGGTCAAGCGCGGCGAGCACGCCGAGTTTCATCCGCCGCCGCAGGGTGGGTTGGCCGATGAGCAGGCAGGCGAACGGGCTTGACGAG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCCAAAACCCCGAGAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [0,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.40,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //