Array 1 233788-234608 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIKY01000003.1 Klebsiella pneumoniae strain TUM14125 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 233788 28 100.0 33 ............................ TATCAGGAGTAAAGTAAGGCAGATGCCGCTGCG 233849 28 100.0 33 ............................ CACGCTGGACCAGAGCGCATCTTCTTCTGTTGA 233910 28 100.0 33 ............................ CATAAAAGTGACGTCTGTTAATTTTTCAAGTGT 233971 28 100.0 33 ............................ CAAAAGGCGCCTTGAACATTAGCAGTTCAGCCG 234032 28 100.0 33 ............................ CGGTACTGGTGGAGGTATCAATGCGCTGCTTGC 234093 28 100.0 33 ............................ TTACGATGTTGAAAAAGCGATGTCGGCTGTAGG 234154 28 100.0 33 ............................ CCAACGGGTATAGTTTTAACTCCGCTTTTCTCA 234215 28 100.0 33 ............................ CCAACGGGTATAGTTTTAACTCCGCTTTTCTCA 234276 28 100.0 33 ............................ TATCCGGCGGCCATGATCCCCGGCATGGCGTCC 234337 28 100.0 33 ............................ TCCACATTTTCAAAATGCGGTAAACTTCTTTCG 234398 28 100.0 33 ............................ TTCCATCATCTGCGGCGGGATAGCGCTGCGGGT 234459 28 96.4 33 ............C............... TCTGCAGCTGGCCGTCGAGCTGACGGATGCCGG 234520 28 100.0 33 ............................ TTCATCACGTGTGAGCGGATTTGGCTCTATCCT 234581 28 92.9 0 ...................A.......T | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.2 33 GTCTTCCCCACATGCGTGGGGGTGTTTC # Left flank : TTAGCGTTGGCGAGCCGGCGACGGCGGTGATCCGCGTCGAGCGCCTGCGACTTGACGGCGCCGCGCAGGATAATAGCCTCCAGCTACCGCTGCTGACCAGCATGTACCTCGGCGACCGCTGGGAGTACCTGTTCCGTACCGAAGGCGACGACTTTCCGCTGCGCGCCTACGGAACGGCGCTGCGCGATGCCGAACACTGCCATCTGACGCTCCCGGCGGAGGATGTGTGGATTTTTCCGCAGCGGTAACTACGCGAAGCCACAGAAGGCAAGCGTCAAGACGTCGCGCTATATTCTGGGTATGACAAAAGCGTTTTGCGCCTGGCTGCGGGGCGGGCAGGCCAGTAGGGTAGACCGGCCCAGGTCAGCAGCAAGTCGACGGTGGTGATATGGGGACATACTTTTTCGTTTGATGAATGTTGATGCTGATGCGGAAACCCTGCGGAGTGCAACTATCGTAAATCTGGTATTTTAATACGCCGCTAGACACAATATGCTGGT # Right flank : TCGCCTTTCAAGTGTCGACAAGTAACGTCTGTGCGCATTTCTTAGATGAAAGGGGATTCCTGACGTAGAGGCATCAATGCCGTGACATAGTTATCCTTAATGTACATCAATGTCTTCGAAATTTCGTTTGGCCAGCACAGTCTCATATGTTTTTTGTATGATTTTACTTATAAATATTCGTGAACTATGTTTGTCCTATACTTTCTTTAGGGGCATCTAAATCATTCGAGTTTATTACTCGTCTGGAGATATTGTTCTTCATATTAATTATTTATAGCTTTTTATATTATTATTTTTGGCTTTTATCTTTAATTCAGTGTGTTGTGGATGTTTTTGATTTTATAAAAAGTTATTTATAAGTTTCCCGGTTTTTAGTATTAATAAAGGGCACATGTTTTTTAAGGAAAAATTCCATGAGGCGCTTGATCAGGGTTTCGCTACAAAATCAACATGCCATCGCGGCGATAAGTTTTGAAAACTGTCCAGCGAAAACCCGGATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACATGCGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,9] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACACCCGTGGGGGTGTTTC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 243362-244183 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIKY01000003.1 Klebsiella pneumoniae strain TUM14125 sequence03, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 243362 28 100.0 33 ............................ CGGACGGGTGCGGGTGCGCTACAGCTACAGCCC 243423 28 100.0 33 ............................ CATCACGGTGCGTGATTCCAGATCGGCCAGGCG 243484 28 100.0 33 ............................ TCGAGTTCACGATTACGCTGCAGCGCGTGGACG 243545 28 100.0 33 ............................ CCTGCGAGCCTTCGTGTATGCGTCCTGCCACGA 243606 28 100.0 33 ............................ CAGGCCAAAGGCGAGGCGGCGACCGTGGCCGCA 243667 28 100.0 33 ............................ TAAGAGAATGTCTCCTCAAAAGAAGTTGCTTTC 243728 28 100.0 33 ............................ CGATTGATGTGTCATTTATGTTCGCTTACTCTT 243789 28 100.0 34 ............................ CGTCGAGGGTCGCAGAGTCACCAAGGCCCAGGTT 243851 28 100.0 33 ............................ TATCTTCTGACAGCTCCTTGCCGCTAATTTTTC 243912 28 100.0 33 ............................ CTCTGTCGATTACGATCTGTTTATCGCGTCATA 243973 28 100.0 33 ............................ CGGCTATTCCTCGTTTGAACAATCACTACTCCG 244034 28 100.0 33 ............................ CGCGGGGAGGATTCCGGGGAGCGCATTCGATTT 244095 28 100.0 33 ............................ TGCAGCAGGTTGGGGCGCAAACATTCAGCAGCA 244156 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================== ================== 14 28 100.0 33 GTCTTCCCCACGCACGTGGGGGTGTTTC # Left flank : TTTACAAAGAACGGCTCTGTATTGATTTGGCATTTTCACTCTCGAGGGAAATGGCGGGCCGCTACGATAAACACAAAGTCTCTGAGGCATTCAGAAAGCGAGTGATAGCCCTGGATTTGCTCAACCTGATTGCGGCCGATATCAATGAGCTGATGGGAGGGAAAGGTGCTCGTCGTACTGGCAAATGATCTGCCGCCAGCGGTCCGTGGACGAATGAAGCTGTGGTTTGTCGAACCACGGCCAAATGTTTTTGTCTCAGGCGTCAAAGATTCGGTCGCACAAACCGTTGTTGATTACCTGTTGCAGTACACGCCTGTGGAATCAGGCCTGATGCTGTTTCGCAGTATTCCTCAACCGCCTGGTTATGAAATTCGCTACAAGGGTGAGGTCAGAAAGCCGATTATTGATCTCAGTGGGTTACAGCTGATTATTGAAACCCTAAAACTGTCGTAATACGTGGATATTGTGGTTAAACTCTCGCTCTTTCACAATATGTTGGT # Right flank : CTTGTGAGGGGTCTACCAGCATTGGCGTACTGGAGTCTTCCCTACACATATGGGACTTAGCAATAAGCGGAATACTCGTATTAGAATAAATATTTTATAGCCAGCGAAACTTAAAATAATTTTTAGCTAATGAAACTGTCGTTTGGGAGAGGTAGGAATATTTTATTGCGAAAGAGAAGGGAACTGTTTAAAGCAATAACGGCGAATGATTCTTATAAAATGAAGGATAGGGAATTCATATGTTTCGACTTTACCAGTCACATGATTTAATACGCCAATTAAATCCTGAAGACTTTCAATATATTTTGACACCAGCAGGTTCGCTAAGAGAAGCGTGTATACATTACGACCTCTCCTGTGAGGCGAATGGTCACAGCCTCGCATTTGGCCTACCGAAGGAAATATACAACTCATCTCCACATAAAAGGCCCTATGAACGAAGGCAACGTAGCTATGCAGATCCTATCTATGATGAGGTAGAGCACAGGCTACAAATTGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTCCCCACGCACGTGGGGGTGTTTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCTTCCCCACGCACGTGGGGGTGTTTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //