Array 1 1023122-1024609 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQR01000001.1 Neisseria dentiae strain NCTC13012, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 1023122 36 91.7 30 .CC.....C........................... GCAAGGACACAGCTGCCTTGCATAGCAGGT 1023188 36 100.0 30 .................................... CGAGGGCAAGGGCAATCTGCCGCTGAGTAA 1023254 36 100.0 30 .................................... AACAAGGGCTGGCTGCACCCCAACGGCCAC 1023320 36 100.0 30 .................................... CTGCCACTCGGCCAAATCGTTGCGTTGGCC 1023386 36 100.0 30 .................................... TTTTATCCACGTTGTAAATATCAAGCTGGC 1023452 36 100.0 30 .................................... GACGGCAGCAGTTGCCATCTGGCGTATGGT 1023518 36 100.0 30 .................................... TCCTTTCATTGGTTTGCGGCTGCGTCCAGC 1023584 36 100.0 30 .................................... GTTTTGTTCGGCGGCTCGCAAGCGTTTCAA 1023650 36 100.0 30 .................................... TCGTATAGTGCCAATACGCGCTTCAATCTG 1023716 36 100.0 30 .................................... TACTACTACTACCGCTACTACTACTACTAC 1023782 36 100.0 30 .................................... TTTTTTGGTTTCCATGCTGATGCCTTTCGG 1023848 36 100.0 30 .................................... CATCTTTTTCCGGGTGGCTGATGGTTATCA 1023914 36 100.0 30 .................................... CCAGAATTTTCAGGGTGGCGCCGGTCATGC 1023980 36 100.0 30 .................................... CTGCGTGATATGCCATTGCGCTCGATTACG 1024046 36 100.0 30 .................................... CGATATGTTTACCGACCCCGCAGACGTGGA 1024112 36 100.0 30 .................................... TACCTGCTTTCAACCCAGCCTTTATCGGTC 1024178 36 100.0 30 .................................... CAGATGACGCTATGATATGCGGCGTGGTGA 1024244 36 100.0 30 .................................... TTCGGGTTCGGGCGTTACGGTGTAATAGGC 1024310 36 100.0 30 .................................... TTTGCGTATTTTTCAGGCTGTTTCGTGCGA 1024376 36 100.0 30 .................................... CCGCCGATACGGTAGATAACTTAACCGCTA 1024442 36 100.0 30 .................................... TATTACCGCTACTCCTGCTACTGCTGCTAC 1024508 36 100.0 30 .................................... GCCGTTTTTAACGTAGTCTTTGCACATTTC 1024574 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 23 36 99.6 30 GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Left flank : GCCGGCGGGCGGGCGCTGGGCAGCGCCGAACAGTTCAATGCCCTCCTTATGCCGTTGGCCGATATTTTCGGCGCTGCTATCGGTGCATCCCGCGCCGCCGTCGATGCCGAATATGCCCCGAACGACGCCCAAGTGGGCCAAACCGGCAAAGTGGTCGCCCCGCAACTCTATTTTGCCATCGGTATTTCCGGCGCCATCCAGCACACCGCCGGCATGCAGGACAGCAAAGTAATCGTAGCGATAAACAAAGACCCGGATGCTCCTATTTTCAGCGTGTCCGATTACGGTATTGTCGGCGACCTGTTCGACATCGTGCCGCAATTAACCACAGCCCTAAAAAGTTGAACGTTTCACGTGAAACAATATATTCCAGATGTTATTGTAAAAGCCGAGCATCAGTTGTTAATAGATGCTCGGCTTTTATTGAAATCAAGTTGGTATACAAAATTTTCATCTGGTAGTGCTGCAACTATGAGTTTCAGATGGCGCAACAGCGACTG # Right flank : TACTCAAGCCTGAAATCCTTATTTGATAAGGATTTCAGGCTTTTTTATCGTTTTTAAAACCACGCTAAAATAGTAATAATTGGTCGGCATTGACCTTTTTTTCACGGGGTTTGGGCTCGCCAATCAGCATAATCATGCCTGCAAATTGCTTTTCAGTTACCTCTAAATAGCGTACTTGGCCTTCTTCGGGTAGGTGTGCTTTCAATCGATTGTGGTGTTTCTGCAACGCATCACGGCCGCGTACGATGCGGGAGTAAACGGATAATTGCAGCATTTGATAACCGTCTTTTTGCAGAAATTGACGGAATTGGTTGGCGGCTTTGCGTTTTTCCGCAGTGGTTACAGGTAGGTCGAAAAATACGATTAAGCGCATAAATTTGGCCTCACTCATAATCTTGTACCTTTAAAGGAAGCATCTCGGGGAGTTTCAAGTTTTTTGAGTTGCCGGTTAGGGCTGCCTGAAAAGATTGAACGGTACGATCGATTGCTGCCAAGAGAGA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTTCCTCTCTCATCTCGTAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: F [matched GTTGTAGCTTCCTCTCTTATCTCGTAGTGTTACAAT with 95% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.40,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.68 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 2436378-2435989 **** Predicted by CRISPRDetect 2.4 *** >NZ_UGQR01000001.1 Neisseria dentiae strain NCTC13012, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================== ================== 2436377 36 100.0 35 .................................... GTTACGAATAGTCAGTAATTGTTCAACTTGCTGCA 2436306 36 100.0 35 .................................... GTTCTGCCTGCAAAGACAATTCTTCGAGAATTTCT 2436235 36 100.0 36 .................................... CCTTTGGCCACTTCCAGCATATCGTTGACGGTCTGT 2436163 36 100.0 33 .................................... CTTTTTTGCCTTTGTTTTTACTGCGCTTTTTTC 2436094 36 100.0 34 .................................... CTGATGTAGTTCGGTCGGGTGAGCAGCGCCCATT 2436024 36 88.9 0 T................................GTT | ========== ====== ====== ====== ==================================== ==================================== ================== 6 36 98.1 35 GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Left flank : TGCCCAAGAGCTATCCCGAAGCCTGCACCCTGCATATCCGCACCCCGCTCAGGCTGCAAAGCCAAGGCAGCGTGCTGGGCATCCACCGCATACAGGCAGGCATACTGCTGCGCCAACTGATGCGCCGCACCTCGGCTATCGCCACCCGCCATTGGGAAGCCCCCATCGAAGCCGATTTCGGCAAACTGGCCGCCGCCGCCGACCGCATACCCAACCATGCCAAGCTGCAATGGCAGGATTGGACGCGCTATTCCAACCGCCAGCAGCAGAAAATGACCTTGGGCGGCATTACCGGCACTTGGCGGTTCGACCATTTGCCTTTATCATTTGCCCAATTGCTGCATATCGGCCAATGGCTGCATATCGGCAAAGAAACCGTATTCGGCTTAGGCCGTTACACGTTGGCAGAGGTTAAATAATGATTAGCTTTGTAAAGAAGAGATTTGTTGGAAAACCCCTTTTCAACCGATTGATTTTGAAAGTGAAAGTTGCTGTCTGCT # Right flank : TTTCAAACAGGTGTTACTGTGTGTCTGAAATCTTTGCAAACATACTTTAAGGCCGAGACCTTTGCAAAATTCAAATTGCTATCTAAAAAATCTGAACTCCGTCATTCCCGCGTAGGCGGGAATCCAGACGCTTGGCATCTAAGTATTTGTTTAATCAATGCTTCAATATTTCCATCTGGATTCCCGCCTACGCGGGAATGACGGGATTTAAGCATTTCAGACGGCCTTAAGGTATTTTTGCAAAGGTCTCAGGCCGTCTGAAATGCTCCTTCGTTTGCCCGGGCTTGAGCCGGGCATCTTGTTGCTTTGAAAGAAATAGAGCTACCCGGGTCAAGCCCGGGTATGATGATGGCCGGGGGTGTTTCAGACGGCCTTCGGGTGTTTTGCATAGGTTTCAAGCTGATTAACGATGGCTTAAAATTCAAGGGGAATCGAAGATGGCGAAAAGGCATCTTTATCTGTTTGCCTACGATATTGCCGACATCCGCACGCAAAACCGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGACACAAAAAAGCCCCATCAACACGGGGATTGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,15] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.10,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA //