Array 1 32238-30574 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAT01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SF12 Cotig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 32237 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 32176 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 32115 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 32054 29 100.0 38 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGACCGAGA 31987 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 31926 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 31865 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 31804 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 31743 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 31682 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 31621 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 31560 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 31499 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 31438 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 31377 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 31316 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 31255 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 31194 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 31133 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 31030 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 30969 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 30908 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 30847 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 30786 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 30725 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 30664 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 30603 29 96.6 0 A............................ | A [30576] ========== ====== ====== ====== ============================= ========================================================================== ================== 27 29 99.5 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 49622-48496 **** Predicted by CRISPRDetect 2.4 *** >NZ_NNAT01000036.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SF12 Cotig_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 49621 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 49560 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 49499 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 49438 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 49377 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 49316 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 49255 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 49194 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 49133 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 49072 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 49011 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 48950 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 48889 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 48828 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 48767 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 48706 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 48645 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 48584 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 48523 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //