Array 1 3535-5516 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIOQ01000069.1 Corynebacterium diphtheriae strain ST378-KZN-2016-48347 48347_contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 3535 29 100.0 32 ............................. TGTAACGTCGCGTAATGGCAAAGTCTGGTACA 3596 29 96.6 32 ............................G TCGATCCTTTACCTGCTGCCACGCCGACGACA 3657 29 96.6 32 ............................G AGATGAAAGACTGGACGAACGCCCAGCTAAAA 3718 29 96.6 32 ............................G TCGCCTGCGGAAACCACACCCTCAAAGCGCTA 3779 29 96.6 32 ............................G CACTACTTTCCCATGGTCGTAAAGGTATGTTG 3840 29 100.0 32 ............................. CATGATCACACTCACAACCACACTCACCCTCA 3901 29 100.0 32 ............................. CTGTCATCGGATTTTTTGAGTTTTACCAACCG 3962 29 100.0 32 ............................. GTCTCGCGCCGCGACGCTAAAGCGGTGGGCCG 4023 29 100.0 32 ............................. CATTCTTAGCGCTTGGCGTCGTGCGAGCTGGT 4084 29 100.0 32 ............................. ACGCGCCCTACGTCGGCTAATTCCTCAGCAGT 4145 29 100.0 32 ............................. GCTTATTAGGGCTTCCCCGTCAACAACGGACA 4206 29 96.6 32 ............................G ATTCGACTTCCACCGATCCGATGTTTGCTCAC 4267 29 96.6 32 ............................T CCTCTGCGATTCGTGTGCGTATGGAAACCCTG 4328 29 100.0 32 ............................. GTTGGCGAGGGCACCAGATACCAATGTCAAGC 4389 29 100.0 30 ............................. TCGTCCACAACGGCTAGGCTCTCGGTCTCG 4448 29 93.1 32 .....T......................T CATGTGAAGGTGATGGTCGAATGAGTGCCGGT G [4450] 4510 29 100.0 32 ............................. CACGGCGTAGTTGGTAGGGGATGGTTCTTCAT 4571 29 100.0 32 ............................. ACGAGCGGTGGTCTAGCGTTCCTCCCCGCAGT 4632 29 100.0 32 ............................. CAGGTAAATAGTCGAGTTATCCGGATTCCTCG 4693 29 96.6 33 ............................A CAAGGCCACTAGACGCGTATTGCCACAGTTCGA 4755 29 96.6 32 ............................G GAGACCTGATGGCTAAAGCTACTGTGACTTTT 4816 29 100.0 32 ............................. ATCTACACCACACGCCGCACACACGAAATGCA 4877 29 96.6 32 ............................G AAGCCGCGACGAAAAAACAATAAATAGAGCAC 4938 29 96.6 32 ............................G TTTTACGGATGATTCCGAGCGTCCCAGTCGTG 4999 29 100.0 32 ............................. TCTCCCCAGGTCAGATAGAGGCCATCAGGGAG 5060 29 96.6 33 ............................G CAGGCCCCCACGTCAACCCCTGCCACGTCGAAG 5122 29 100.0 32 ............................. TGTGACGTCGCGCAATGGCAAGGTCTGGTACA 5183 29 96.6 32 ............................G TTGGCTGGTGCATCTTCGAATGGGATGTAGTT 5244 29 96.6 32 ............................G CGTCGGATGTGTGCGAGGGCTTCTTTTTTGGT 5305 29 100.0 32 ............................. ACAGGCGGTTGCGCTGATTGGACTAGGAATCT 5366 29 100.0 32 ............................. CTCAAGGCCAGAGCTGGAAAAGCCGACGCCGG 5427 29 100.0 32 ............................. AGATCGTTAAACCAATCTGCTTGCTTTGCGGA 5488 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 33 29 98.5 32 GTTTTCCCCGCACCAGCGGGGATGAGCCC # Left flank : CTTACTTGGAAAGAAGCTGAGGCATTGGCTGGAAACACAGTGCGTCTGCCAGCCCAAATGACACGTAGAGATTCGGATTTTAATGCCGTTATTGATTCGCTCGAAGCACAAACACCACCAGAATGGCAACGATCCGGTTTGCTTAAAGGCCAAGTTGCGTTGTTTTTCGACGAAAGAGGAGAGGCTCGTTTAGGTCGATTCCTAGTGCGTTATACCAATGAACGTGGATTAGAGGTGGAGGTCTGCCCAAAGGAAGACGCATAAAAGGAAACCCCGCTGGTGCGGGGAAGTATGCCTATGTAAATCTTGTAGAGATATTAAAAAGGCTCATCCCTGATCGCAGGGAACAATGCCAGCCTATGGCTAGAAGAAAGGACTAAGCAAATTTGGGTGAATGGCTGATCCTAAAACAGTAGAAATAAAGATGAAGCAGAAAAATTGCTGAAACAAAGTTATATGTAATAAGCTCTAACTGGCTCTAAACGTGCAGCTTGATAAGT # Right flank : CAGGGACTTTGAGAACTGGACCGCCGTGATTCCTTGCACTAGCAGGGTGGATGAATCTTTGTTGAAGAACGGGTTTTGGGATCTGTGTTTTCATTCAGAGAAATCAGTAAATGATGGGTCTACTAAAAAATTTTGAAAAAATTAACTTTTAATATCTATAAGGTGTATTCTGTAGAGAAAGTGCTTCCTAAGTTGGGAGTTTTAAAACAATCAGGAAGGAGTTGGTGGTGGCTTCGTTACTGGAGATCCGCTGGATTCTGGCTCTTGATACTCAAGGTAACCAGATTTCAGTTGGAATACGAGATATTTTCGCGGGGGAGGTGCAGGTTGCCTATATTCAGGGGGAGTCCCCAGCTCAAGACTATGCTGTGATGCGGCTTTTGCTGGGTATTTTCTGGCGTGCCCATTCCATGGATATCGACATGGACGTGGAACCTTTTGATTTTCTTGAATGGTTCAACAAGATGAGACGTCAGCTTGCTCGAAAAGGGAAAGATCAG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.93, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTCCCCGCACCAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCCAGCGGGGATGAGCCG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-12.70,-12.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //