Array 1 8798-9004 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUR02000121.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 8798 28 100.0 32 ............................ TCAGATGGTTACCATCAACCACAACATGCTCA 8858 28 100.0 32 ............................ TTCACCAACCGGCCCAAATATCTCAGTTGCAC 8918 28 96.4 32 .............T.............. GATACGCCTGCCGCCGTGGGCACGGAGCTGAT 8978 27 89.3 0 ....................T...-..T | ========== ====== ====== ====== ============================ ================================ ================== 4 28 96.4 32 GTGAACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTTCTGAATGGTCAATGATAGTCGGTAATACTTATTTTTTCGATAATAGTTATTGGTGAACGGTTATCAATGTTTTATAGGGATTTTCCCTGGCAGGAAAATATCTCATGTCATCATATATAACGATGGATTTGATATTGAAAAGTCAGGCCGATATGAAGGATATATTATTACAGAGGAGCATCTGTATAAGGTAAAATTCAGATCTTACAGCCGTTATTACCTTGTATCACCGGATGGGAAGAAATCGATTCCGCTGAGTGATGAATGGGATAAAATGGAAGATTTCTTGAAACGTAGTCGCTAGCTAAGAAAATTGCGTTAATGGTAACTTAAAAACTTGTGCATTCCCGAACCTAATTTTTAACCCTTTTTTAGCAGTCAATCGTAACTTATTGATTCTGAATTAAATGTTATCTCTTTTGTAAAAAAGGGTCTTTTGGGTTTTTTATAAATATATTCTTTGATAGTCAGTGGGTTGGAGTTAATATGTAACA # Right flank : TTCTTAAAGTTCTAGGTGTGGTTTAGAGTTATAGAAGTAAGGAATTTCTATTGAGTGATAAGACTGGAAATATTGGCCTCATATTGAGGTTGGTAAATACTCTACCTCAAGGGGGAGGTAGAGTATAAATGGGTTTGAGTTTTAATTGAGGCTTTTCACGTTTTACATGAAGCGACGTAAGCTTTATCAGATTAAATTTCCCTATAATCCAATTTTTCGAATGAATTTATAGCGCTATTTTTCGATAGATTATAAATTTTAACTCCTCTGTTTATTGCTATTTCATGAGCTAGGTTGAAACAAGGAATGATGAAATCGTGTAAGTTATTATTTAATTTGGTATCGAGTTTGTCATTTTGAGTTTCATAAAATCTTGGTTCTGAAAAATTGTTCATATCTAAACCTGCGAAATATATTTTTTTGTAGCCCAAAAACAATGCTATTTGCAGAGCGGAATATGCAACTGTTGTTCCGTTATAAAATCCAAGATTTAAGTTCAA # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGAACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 12651-12918 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUR02000121.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_121, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 12651 28 96.4 32 ...........C................ GCAGAGAGAGTTGGCTTCTATTTGGGTTATAA 12711 28 96.4 32 ...........C................ TTATCGGTAAAAATGCGGTCCGCTCTGACACC 12771 28 100.0 32 ............................ TTCTGTATCAAGTGCAAAATACACACCGACAA 12831 28 100.0 32 ............................ GTATTGTCGCGTACTTCAATTGGCGTCTGGTA 12891 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 5 28 98.6 32 GTGTACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGGTATTGATAGTGGCCGTGGAGTTTTAACTCACCAAGGGGATGCTATCAGAAATATTGAGGGCTCATTTCCTGGGGCAATAACAAATGGTTTTCATCTGGCAACAAAAGGGGCTTGTTATGCTAGTGCAACTTCTGGAATGGGTGTAGATGGAAAGCCTAGATCGGTAGGTCATTTTACCCCGGATGTTGTATACACTGAATACGGTTTTGGGTTCGATGCGTCAAGGGTTGTTCCAGTAACCTCAGAGAACCGCCCCCGCAATATAGCATTTAATTACATAGTGAGAGCAGCATAATGGTTGAATAGAAGTACCTTTTGAACCAAAAATAGAAGGGGAGGGTGCTCTACTTAAATGAAAGAAATTTTGACCCTTTTTTAACGGCAAATTTTAATTTATTGATTTTTAAATAAATATTATTCACCCCGTAAAAAAGGGTTTTTTGTTTTTTATAATGATTATTCTTTAACATTCAGTAGATTGGGGTTAATATGCAACA # Right flank : AGCCAGCACTCTCACTTACCAACTGGTTTTCAGAACTGGCGGCTCAAGTGTGTCGATGAGAACAATGAATGTGTGTTTTATGAAGATAGGGATTCCTGTGACATTCCAGAATACTGTCGTTTAGATATTCGTGTCCAAATGCCGGAAGATTCAGTTTGGAATTTAAAACAGAAGGAGTTGCAGGAAGAGATAGAAGGAATAGGAGAAAAATAGTTTCCAGATATTAAATATAAATGATTTTGATATATTTTAGTTCCTAAAGTGTTGAATTACTTATTGTTGCTAGTGATATAAAAACAGTCAGTCTCCTAATAAATAGGAATACTGTATTACTCCTCTTTCTGCACTAGACTTTAATTTTAATAAATTACAGTCGGATTGTTTTTACAATAATTAAATATGTTGATTATAAAAAATATTATTCTGCTTAAGGAGGAATTACATGAGTCAAAAAAATGATTTTAAGGCTTTTTCTATTAGTAATAATGCTAATGTAATTA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : GTGTACTGCCGCACAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTTACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [76.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 24947-24560 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUR02000044.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_44, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 24946 28 100.0 32 ............................ TGCGAAAGATATTACCCCCGACCATATTAAGC 24886 28 100.0 32 ............................ GCTGAACAACATCGTGACGCACTAATTAAAAT 24826 28 100.0 32 ............................ AAAGCTTGGTATTTCACATAATCAGGTAGCCA 24766 28 96.4 32 ...........................T GGTCAGAGAAGTTATAAAACATTCAACTGAAA 24706 28 92.9 32 ............G..............T TATACCTACTTGCCGCTTTTACGTTTGCAAGA 24646 28 96.4 32 ............G............... AGTCTGTACGAATCCCGGCAATGTCTGGCAAT 24586 27 89.3 0 ...........T.........C-..... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 96.4 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCATTGAATGACTTGCAGTCTTTATCTTGGTTAAAAGGACTTCGGGACTACACTGAAATGACTGATATTCAGCCAATTCCCCAAGAAACTAAGTACTGTTGTGTCAGCCGAGTGCAGGTTAAAAGCAGCGTGGAGCGGCTTCGTCGTCGTTCAATTAAAAAAGGGTGGTTAACGGAGGAACAAGCCTTACAACGCATTTCTATCAGCAAGGAACAACGTACTCATTTACCGTTCTTGTTTCTCAAAAGTTTGTCATCGGGTCAAAGTTTTCTGTTGTTTGTCAAACAAGGACCAATACAAGACAAATCGACATCAGGAGTTTTTAGCTCGTACGGATTAAGTTCATCAGCTACCATCCCTTGGTTTTGACCCTTTTTTAGCGGCTAATTATAACTTATTGATTTATTTAAGAGATTAGCCGCTGCTAATAAAAAGGGTTTTTCTGCTTTTTATCATTATGTTCTTTAATAATCAGTAAATTAAAGGTAGTATCTAACA # Right flank : AAAAAGAGTTTTGCTTTATTAATAGCAGAACTCTTTTTTTCCTTAAAATTTTGTATTAATAATACTTATTGACGTGTGTATCTTAAGAAATATTTAGGGAATTGAGGACGATATGCCCGTAGGAAAATAATGTAGCTTTGCCTGATAAATGCACCCGATCTCCATGTAATTCACACATAATGTTTCCACTGCGTTTTGACAATTGGCGTGCATACAATCTCTGTTTATTTAAACGGTCGCTCCAAAATGGGGCTAATACACAATGTGATGATCCGGTTACTGGATCTTCTGGTACGCCCTTAGCAGGTGCGAAATATCGGGAAACAAAGTCAATTTGTTGTTCATCTAGTGCTGTTATGACAACTCCTGGTAAAGGCAGAGTGGCTATTTTGTCAAAATTAGGTTTTGTATTTAAAACTTGTTCTGCGGTTTCTAGTAAACAAATGTAGCGATTATGAGAGACAAAAAGTTCGGATATTTTCTGACTTAATGCATTTTCG # Questionable array : NO Score: 5.93 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.85, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCGCGCAGGCAGCTTAGAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 380-52 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUR02000796.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_797, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 379 28 100.0 32 ............................ TACGCAAAAGAAGAACTGAGGGCTGAAATCGC 319 28 100.0 32 ............................ TTTTCTAACTTCTTGCTGTCTTGTCTGTATTT 259 28 100.0 32 ............................ TAGCTTCTGTCGCTTCACGATGTGCCGTATCA 199 28 100.0 32 ............................ ACATAGCAGATTTTGGCATTGATGATAGCTGC 139 28 100.0 32 ............................ TGTTAAATAGTCAATTAATCGATATTTGTTGT 79 28 92.9 0 .............T.A............ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 98.8 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : | # Right flank : AACAGTTCAATTAACTCAATGAGAGTCCGGCGAGTTCACTGCCGTACAGGCA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 3801-4608 **** Predicted by CRISPRDetect 2.4 *** >NZ_JXUR02000156.1 Photorhabdus luminescens strain NBAII Hb105 Chromous4_raw_trimmed_contig_156, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3801 28 100.0 32 ............................ ATTGCAGACCAACTTGACGCACAAAGGTAGAC 3861 28 100.0 32 ............................ GTAGATATTTCCGTCACCTGTTATAGCTGAAT 3921 28 100.0 32 ............................ CGTATACCACATTGCTAGAACCGAGTTGTCGG 3981 28 100.0 32 ............................ TGAGCGTGCTTTTCACCTTCGCGCGTGGTATC 4041 28 100.0 32 ............................ ATTCAGTGCTGAAGAAGCTGCTGGTATCTTAC 4101 28 96.4 32 .............T.............. ATGACTAAAAATACAGAGTCTTTAATATCAGC 4161 28 100.0 32 ............................ TATTGATACCTCTCAGTTCAGGTTTCCAATAT 4221 28 100.0 32 ............................ TGCACGTAGCCGTTGTATTCCAGAGTACGATA C [4231] 4282 28 100.0 32 ............................ CAAGTTTAAATTAATTATGTCTGAGCATCAGA 4342 28 100.0 32 ............................ TAGAATGACAATGGCTTATTTAGATTGTGAAT 4402 28 100.0 32 ............................ AAGCAGGAAGACCGGAAGCACCGAGGCTATCA 4462 28 100.0 32 ............................ GCTGAGCGTAAAATTTTGGTCTGTAGTTCAGT 4522 28 100.0 32 ............................ ATTGAACGGAAACCGACAATTTGTTCAGCCGG 4582 27 96.4 0 ........................-... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTGCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AGAGGAAGCAGGTCTGGAAGTTGTTATGGATCGCTGCCCAAAAATTGAAATTCCAAGATTGGGACTCGAAAAATAATCTTTACCAGCTTGTAATTATTTGGTTTCTAATCGGTGGATGAAGGGAGCCTGGCACCAATATCTAATACAAACTTAAGGAGTTGGATAAGAAGTGGTGCCCGGGTTCCGAGTGTTCAAAATAATGCTTAAGTTGGATATTGAGTTTACTTTTCTAGACATCTTATAAAATCTATTTTTGCAGTTATTACAATGTATTAAGGAACATTTGGTTGTTTTTGTGGTGGCTAAATTTTGCCAGAATCTACACTTTTATTGCTATAAGATATGGCGCTTTTGCTATGCCCCAGTTTTGACCCTTTTTTATCATTAAAAAATAACCTATTGATTTAAAAGAAAAATTAAATATCGCCTAAAAAAAGGGTTTTTTCATTTTTTATCACTATATTCTTTAACAGTCAGCAACTTAAGGTTAATATGTAACA # Right flank : ACACGATAACTGCCTTAGGTTGTTTAGGTATAAATGGGAGATTAATTGCGCAGCCTTGGGGCCAGTAGCTGATTGCGGATAGATTCTGCTAGTTCATCTAGAGAAGGTTGCTCTGGATGTTCATCAGATGTTTCATAGGCTAATTGCGCTTCAGCCAAATAAGTATGTACAGGTTGACCGTTGTCATCTTCCATCACAACGTGATACCAAGGAGCGGAACGCAAGGTAGCATTGGATGCAATGTCATCCTCTTGGGGTTGTTCCAGAGAGTATTCCACATCAATATCCACGATGACTCCTAAATAACCAAGAAGCTTGTGACGTACTTGTTGGCCGATACCGAATTTGCTGGCGATAATCATAGTCACCTCCAAAGAAGATCTTGCATTGACATTGATATAAGGGCAGTAAGGTGAATTACAAGAGCATACCCGGTGGTTGAAGCCTTTTTTTGCTTTAATTGCGAGTGTGACTTCATCTATTTCAGGTTAGCTGTAGTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //