Array 1 96064-94816 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEM01000046.1 Escherichia coli strain NS-P059 sequence046, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96063 29 100.0 32 ............................. CCCCTTGACCTTAACGCCGCGTTTAGCGTCAC 96002 29 100.0 32 ............................. GGTATTTTCAGCAGATTAACCACCGCGATCGC 95941 29 100.0 32 ............................. ATTACATCCGGCAATATCATGCTGATGCCTCG 95880 29 100.0 32 ............................. GGCGGGCCGTTGGCTAAACGCTGCGATCTGCC 95819 29 100.0 32 ............................. GGACGCCCAGGAAAAGGACATTGCAGCGTCAT 95758 29 100.0 32 ............................. AAGGTCGTAAACATTGAAGACGCGATCGCGCG 95697 29 100.0 32 ............................. TAACAGGAATGTTTACGCTGGCTGAGGCTGAG 95636 29 100.0 32 ............................. CCGCCGTCGAGTGTAATACCCTGATCCATCGC 95575 29 100.0 32 ............................. CAGGATTGAAATACAGCCTCGGCCTGGGACAG 95514 29 100.0 32 ............................. AGGCGAGGGAGATCAGAGATCAGGCTATTACA 95453 29 100.0 32 ............................. AGATCGGCGGCCAGTGGATAACCGTTATCCCC 95392 29 100.0 32 ............................. GTGTGGTAATTGGTGGTCTGGCTGGTGGTTTA 95331 29 100.0 32 ............................. AGAATCTGGACACTGCATATACCGCAATCCGT 95270 29 100.0 32 ............................. CCAGCCGTTCAGTATTGCCGGTGTCAGCAAAA 95209 29 100.0 32 ............................. GAAAAGCTACTTTTGTGTTCAACTGATGCATT 95148 29 100.0 31 ............................. CCGCGCAAATCCAGCGAGCCGCCGACGCTCA 95088 29 100.0 32 ............................. TTGCAAACCGTGGCAAACGCAATTAACAAAAA 95027 29 100.0 32 ............................. ATTGTTATAATTATTTATTGAAATATCATTCC 94966 29 100.0 32 ............................. AATCTATTGTGAATTTGAAATGGTCCAGCACT 94905 29 100.0 32 ............................. GGTAAAAACACGGTCTGAACCGACATTCATGT 94844 29 93.1 0 ...........AT................ | ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTTGCCGCTGGTGAAATTGAACCACCACAACCCGCGCCGGATATGTTACCGCCTGCCATCCCTGAACCTGAAACGTTAGGCGATAGCGGTCATCGAGGACGCGGCGGATGAGTATGATCGTAGTTGTAACGGAAAATGTTCCTCCACGTTTACGTGGACGGCTCGCTATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTCGGAGATACATCCAAACGTATTCGGGAGATGATCTGGCAGCAAATCTCTCAACTGGCAGGTTGCGGAAATGTAGTGATGGCTTGGGCGACCAATACCGAGTCAGGTTTTGAATTTCAGACCTGGGGTGAAAATAGACGTATTCCGGTGGATTTGGATGGGTTGCGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTATCCGTTCTTTAAAAATAAGGAAATGTTTTAATTTAGTTGGTAGATTGTTGATGCGGAATAAATTTGTTTAAAAACAGTTATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 861-161 **** Predicted by CRISPRDetect 2.4 *** >NZ_BGEM01000032.1 Escherichia coli strain NS-P059 sequence032, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 860 29 100.0 32 ............................. GATACGCTTCATCGCCCGACGTGGGGAGCATA 799 29 100.0 32 ............................. ATATTGTCAGAAACTGGCTGGAGCATGGTGAC 738 29 100.0 32 ............................. GTGGCTGAACTTCCGATGCGATGAATGTTATT 677 29 100.0 32 ............................. GCGAATGCCCCATCTGTAAACGCCGGGGAAAA 616 29 100.0 32 ............................. TTGATTACCTCGCTGTTGCTGCGCTACTGGTG 555 29 100.0 32 ............................. GCGTTTCCATGCCGTTGATAAACATCCCGCCC 494 29 100.0 32 ............................. GGTTGCCATCGCTGACGCAACGTCATTAAGGC 433 29 96.6 32 ....................T........ GGAATAATTACCGCGCTGATTAAATTAATTAA 372 29 100.0 32 ............................. GCGGCAGCGCCCGCCGGGTACGACGGCAGCAC 311 29 100.0 32 ............................. TATTACGCGCCAGCAATGCTGACAGCGGCAAA 250 29 100.0 32 ............................. CGCGAGAGCCAGCAAAACGCCAGGGCACAAAA 189 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTAT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //