Array 1 161289-157219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRQ01000032.1 Pseudomonas sp. 1-7 pse1-7-32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================== ================== 161288 29 100.0 32 ............................. CCGTGCAGGCTTGCTTTGAGTCAAGTGTCGAG 161227 29 100.0 32 ............................. CCAAGAACCGCGCATCCGACTACTGGGCCCGC 161166 29 100.0 37 ............................. TGGGTGGACGTGGACATTGCCATCGCCCTATTGTGTT 161100 29 96.6 32 ....C........................ CTGCCCGAGCACTTGAACATGCCGGCAGGCAA 161039 29 100.0 32 ............................. GCGCGCATGTGCTGATCGTCCAGATTGCGCGC 160978 29 100.0 32 ............................. GTACCGAGCGCTCCATTCTGGTGTCCGGCGAT 160917 29 100.0 32 ............................. TGACTCACGCACTTTCGGATTGATCGGCAGCT 160856 29 100.0 32 ............................. GATGTAGCTGACCAGTGGCCCCATATAAGCTC 160795 29 100.0 32 ............................. CCTCGGCCAGTGCTTCGCGGATGCGCTCGACA 160734 29 100.0 32 ............................. CGGATCAAAACCAGCTTGAGGCGGCTTCGTAA 160673 29 96.6 32 ............................A CTGCCACGTCCAGGGTAGCGAAGCGCAGGTTC 160612 29 100.0 32 ............................. TACGACTTCTTGGTCTGGTCTACGGCAAGAGC 160551 29 100.0 32 ............................. GTGCGGTTTCCGATCTTCACCTTGGACGGGGC 160490 29 100.0 32 ............................. GCCTCCGAAACCGGGCGCCTGGGTGACGTGCT 160429 29 100.0 40 ............................. CTGGTGCGCATCGATGACGGGCGCGTGGACAATCGACGTT 160360 29 100.0 32 ............................. GAATCTAGGAGGGGCATCGCATAATCGACGTT 160299 29 100.0 32 ............................. TCGGCACACGGCTCGCAGCCTTGACGAGTTCG 160238 29 100.0 32 ............................. CTCGCAGTTGCTGGCCAGCTCATAGCGCAAGC 160177 29 100.0 32 ............................. GCGGCTTCCGCTTCTGGGGTTCGCGCACCTGC 160116 29 100.0 32 ............................. CCTTCATAGCCGGCGCGGCCGAGCAGCTTCCA 160055 29 100.0 32 ............................. ACGATGTACGCGCAGTGCACCAACATGGCCTG 159994 29 100.0 32 ............................. CCTTATCGATGCCAATTCACAGGATGGCCGCC 159933 29 100.0 32 ............................. CAGAAACAGGCGGAACTACTTGAACAGCGCCT 159872 29 100.0 32 ............................. ATGCTGTTCCGCATTCCTGACGTGAGCGCGAC 159811 29 100.0 32 ............................. CCAAGCAGGCAGCCACGCAGGACAAAGGCAAG 159750 29 100.0 32 ............................. GAATCTAGGAGGGGCATCGCATAATCGACGTT 159689 29 100.0 32 ............................. CCCGATAGGTCGCTATCGGGCTAATTTGTTAC 159628 29 100.0 32 ............................. TACCGGCACCAGGATGGCGGCCGCCTGCACCG 159567 29 100.0 32 ............................. TCGCTGCGACTGGTGTTTTTTGCAACGATTGG 159506 29 100.0 32 ............................. ATGCACTGCGTCGCCATGGTATCCATGCGCCG 159445 29 100.0 32 ............................. GAATGGTGTGCTTGCCGTCCTTGGTCAGAACC 159384 29 100.0 32 ............................. GGAAAGGCCGCCGGGTGCGGTTCAGGCGGCGC 159323 29 100.0 32 ............................. CAGATCACAGCGCATTACCGGGCGCTGCTGCG 159262 29 100.0 32 ............................. TCATTCAGCAGGCTCTGCAGCCTTTCGTCCTG 159201 29 100.0 32 ............................. TCCAGGCCGTAGTCGTCGCGCAGGCGATTGAG 159140 29 100.0 32 ............................. TGACCACCTGATCAAACCCGTCCTGCCGAGCA 159079 29 100.0 32 ............................. AGAAGAGAAGAGATATACAACAACAACAGGGC 159018 29 100.0 32 ............................. AATGATGACGCCCTGGCCGTACTTCTCAGGCG 158957 29 100.0 32 ............................. CGCATACAGCCCGGCGTCGAGCTGAAAGCCAG 158896 29 100.0 32 ............................. GCCGCGAGAGCCTATGGCGGCGCTAATTTCGT 158835 29 100.0 32 ............................. GTATATCCATGCGAGTAATTAATGACGAAAAA 158774 29 100.0 32 ............................. CCCATGGTGCCGTTAACTTCCTCGATGTTGAA 158713 29 100.0 32 ............................. ACACCAACCAGTACGGCATCCAGGAGACCAAA 158652 29 100.0 32 ............................. CGCTGGGAATTCGAGCGCGTGAACATGGACGT 158591 29 100.0 32 ............................. CCAGGTGCTGGCTGGTCGCCAACGTAGTAGGT 158530 29 100.0 32 ............................. GCGGTAGAGCCTGGCCTAATCTTGACTGCTAT 158469 29 100.0 32 ............................. TCTGGGGCATGACCGCAGGCGAGGTGAAAATC 158408 29 100.0 32 ............................. GCGGAGGTTGCGCGGGCCAATGGTAAAAAGGG 158347 29 100.0 32 ............................. TCGTCTCAAGCCTCGACTGAGGGAATGCCTAA 158286 29 100.0 32 ............................. CCGGATTCTGACGCCATTTCTCAGGCTGAGGC 158225 29 100.0 32 ............................. GGCATTGCGCTGGCTGACACCCTGCTGCTGCC 158164 29 100.0 32 ............................. GCCCGGAATGGTCGCCTGGTGTCATGACCTAC 158103 29 100.0 34 ............................. GCCTACCGAATGCAGTGCTTCCTGTTCGCCCCGC 158040 29 100.0 32 ............................. GCCCGGAGTGGTCGCCGGGTGTCCTGACCTAT 157979 29 100.0 32 ............................. CCACGGGTGACTGTCAGGTTGTTGCCGGACAC 157918 29 100.0 32 ............................. GGAACTACCACCCGGAGGACGACAATGCGTGA 157857 29 100.0 32 ............................. CCTTGACCGCCTGTTGATTGAAGCGGCCAAGA 157796 29 100.0 32 ............................. GCCAAATCGTTGGTGCCGCCGAACTGGATGGT 157735 29 100.0 32 ............................. CCCGCTAACTACTGGAGTAAGTCCCATGCAAA 157674 29 100.0 32 ............................. GTGCCGGCCGCCAGCTCAAGCTTGGCGCCTGT 157613 29 100.0 32 ............................. CTGACGCAGGAACTCGGGGTGCTTCAGATACG 157552 29 100.0 32 ............................. GTATTCCGTGGGGTGTTCATCACCCTGGCGGA 157491 29 100.0 32 ............................. CCGGGGTTTTTCTTTGTGGGCCAGCCGGGCGG 157430 29 100.0 32 ............................. TCGGGCCTGCAGGAGTAGACGCAGGTGGAGCA 157369 29 96.6 32 ....A........................ GGCGACGTTCCCACCATAGGCCATGGCTCGAC 157308 29 100.0 32 ............................. CTGGTGTGCAATAGTCGGCCACATCAGATGTC 157247 29 89.7 0 .........................G.TT | ========== ====== ====== ====== ============================= ======================================== ================== 67 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GCGAAGATCATCCCCACCATCGAAGAGGTGCTGTCCGCAGGTGGTATCTCGCCACCCGAGGCACCGCCGGAGTCCGTACCACCAGCTATCCCCAACCCGGAAAGTATCGGCGATGCCGGGCACAGGGCGCAGTAATGAGCTTTCTGGTCGTGGTCACCGAGAACGTACCGCCGCGCTTGCGCGGACGCATGGCTATCTGGCTGCTGGAGGTGCGTGCCGGCGTCTATATCGGTGATGTCTCCAAGCGCACCCGCGAAATGATCTGGGAACAACTGAGCCGGGGGCATGAAGATGGCAACGTTGTTATGGCCTGGGCGAGCAACCACGAGTCGGGTTACGAGTTCCAGACGCTAGGCCCGAACCGTCGTTTGCCGGTGGACTTTGATGGCTTGAATCTGGTCGCCTTTCAGCCCTTGGAAAACCCTGATCTTTAACAAGGAAAAGTTGGTAGATTTTTAGCGGCTAATTTTCCCCTTTGGGGACAATTGGTTACGCTAAGA # Right flank : GGAGGGGGGCTCGGCACGCTGTTTTTTAGCCGGGCAGGCGAGTAATCTTGCCGCCGATGGTTCTGCGTGCACGTACATGACGCGGATGAAAAGGGAATAGGGTGCGGCGAATCTCGCCAACGCCCTGGCTGCCCCCGCAACTGTAAGCGGCGAACGATGCCCTCATGCCACTGACTCCGGTCGGGAAGGCGGGCGAAGTGCCAAGCCGTGAGCCAGGAGACCTGCCATCGATAACGGGCGTTTCGCCCATCCTTCATCCGAATCGTCGCGCGGTGGGCGCGGCAAAGGAACTCGCATGCATATCGAACCCGGTGTCGTCGAAGGCGCCAAGATCCTGCTCAGCTACGCAACGGCCGTCACCGCTTTCGGCCTGACCGCCAAACTCGCCCTGGACAGCGTCCGCAACAACGGCGGTGTCGCCGCCCTGGCGCTGCGCAGCCTGCTGACCACCGCGCTGGTGTTCTGCTTCTTCGAGGTGTTTCCGCATCATGCGGTGGGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [35.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174513-172406 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRQ01000032.1 Pseudomonas sp. 1-7 pse1-7-32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174512 29 100.0 33 ............................. GTCGCATGCGTGACTTCCTCGACCTGTGCGTCC 174450 29 100.0 32 ............................. TCAGAGGCTGAGGCGCTGCTGGCTGATAGTCA 174389 29 100.0 32 ............................. CCAGTTGCCCAGCAGTGCCTGCCGATGGATCT 174328 29 100.0 33 ............................. TTTGCACCACTTGCGCACATCCTCTACGTCGCC 174266 29 100.0 32 ............................. GCAAGGAGCCAAGCATGACCTCCCACGAACGC 174205 29 100.0 33 ............................. TCGGGAATGCAGTATCTGTATCAGACCAGCGTT 174143 29 100.0 32 ............................. TCCGGTGCCCGGCGTGCGGGACACGCTGTCGA 174082 29 100.0 32 ............................. GTAGTCGCACGATCAACGAAGCTAGGAACGTC 174021 29 100.0 32 ............................. CCTGGCGCTTTGCCGGGTTAAGGCTGATGCCG 173960 29 96.6 32 ............................T CCAGACCAGCCAGAGTCAACACCTCCTGACTC 173899 29 100.0 32 ............................. TCAGGCTCTTTCATCAGGGCGCCTAGAACGCC 173838 29 100.0 32 ............................. ATTCAGCGGATAACACCCCTATACATATCGCT 173777 29 100.0 32 ............................. GCATTGCCCTTCGCTGCTGCGAGGCTTTGCGT 173716 29 96.6 32 ............................T TGTACGAAATAGGGCTAATCGATTACCGGTTC 173655 29 100.0 32 ............................. ACTGGCGCAAAACCAGCTTTGACGGCGCTCAC 173594 29 100.0 32 ............................. CTGCCATACATCGCCCAGTTTAGTGACAGGCT 173533 29 100.0 32 ............................. ATTGCCGACCATTTCAACGATGAAACAAAGAT 173472 29 96.6 32 ............................A GCATCAGCGCGGCCAGGACGATCACTGTCCAA 173411 29 100.0 32 ............................. TACGTGGCCGACCTGGCATATCAGGCAGGGAT 173350 29 100.0 32 ............................. CTAGTAACCAGCTCAGACGCTTGTTCGTGCGG 173289 29 100.0 32 ............................. TCCGGCTCAGCCTTGTTCAGCGCGCGCTTGCC 173228 29 100.0 33 ............................. GTGAACTGCTCCAGGCTGGCATCAACACCGGTC 173166 29 100.0 32 ............................. AGTGCGCATTGGCTTGGGCGTGAGTGTGGAAA 173105 29 100.0 32 ............................. TTGCTGAAATTCGCGCATCAGGCAGCCTCCAC 173044 29 100.0 32 ............................. AATGAAGTGCCGCCAACGCGACAGGCGCACGT 172983 29 100.0 32 ............................. TTGGGGGACAGCTTGACGACACCCATCGAAAC 172922 29 100.0 32 ............................. TCGGTGAACTTGGCGAGATGCTGGTCAAAGAA 172861 29 100.0 32 ............................. CGTTGTAACTAATCCATCAGGCCCGGTTACAA 172800 29 100.0 32 ............................. ATCATGATTAACCCCTTACCACTGGCCGAGCG 172739 29 100.0 32 ............................. TTACGAGGCCTGCCGCGCACAGGCCTACAGAC 172678 29 100.0 32 ............................. TTGATAGACGTTCATTTTCGCAACTTGTGCAA 172617 29 100.0 32 ............................. CAGATTGATGCGCGGGAGGCGCTGGCAAAGGT 172556 29 96.6 32 .................A........... CGCATGGAGACGTTGGTTTTGCCGAACTGGAA 172495 29 100.0 32 ............................. TTCTGCATTTCCTCTTCGTTGCCTTCGCGCTC 172434 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================= ================== 35 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATGAACCG # Left flank : GGAAACCATCATGCCGCGCCTGTACCGCGAGGCGCCGGTCAACTCGATCTGGGAGGGTTCAGGCAACGTGCAATGCCTGGACGTGCTGCGCGCTATGTCCAAGGAACCCGGTGTGCTCGATGCGCTGTTCGCCGAGCTGGGTGATGGCCACGGCGATACCCGCCTCAAGGCGCACATCCAGCGGCTCAAGGCAGATTTCGCTGACACAGCCGATATCCAGTACCGCGCGCGCCGGCTCACCGAAGACATGGCCGTAGCCCTGCAGGCGAAGCTGCTGCTGGAGGCGGGCAACGCCACTGTCTCCGATGCCTTTATCGCCAGCCGGCTGGAAGGCCGTGGCCGCGTCTACGGCACCCTGCCGCGCGGTGTCGACGTCGAGGCGCTGCTGGCGCGTAGCACGCCGAATCTGCTTTGATACAGGGGCAATCTTTAACAAGGAGAAGTTGGTAGGTTTTTAGCGGCTGATTTTCTCCTTTAAGGAACAATTGGTTAGGCTAAGT # Right flank : GCTCAAGCCAAGACGCACGAATCCTTAGGAGCGAGCTCTGCTCGCGAAGCTTCTGACTCATCCAGATTCACGAGCAGAGCTCGCTCCTACAGGTCAGGCAGTCAGGCATATTCACCGCGGCGCACTGGTCTCCCCCTGCGCTGTTGTCAGTCCAGAACGATGCTGGCACTTTGTTGGGCCAGTAACGATGCGATGCAAGGAGTGCCAGATGAAAGGATTCGCCGATCTCAGCGAGCAGGCCCGTCGTCTTTGGGCCAAGAGTGACGATGGCTTCGGTCATGGTGTGCTGGCGCATTTGCTGGATGTGGCGGCGGTGGCCGAGCGGATGCTGGCCCATGAGCCTCCGAGTACGCTGGATTGGGCCGCTCAAGCGCTGGGGTTGGAGCGCGAGCATGTCGCCCGCTGGGTTGCCTGCCTGGTGGGCCTGCATGACTTCGGCAAGGCCATCCCCGGCTTTCAGGACAAGTGGCTCGCTGGGCGGCAGGCTGATGAGGCGCTTG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 28978-29547 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRQ01000007.1 Pseudomonas sp. 1-7 pse1-7-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28978 28 100.0 32 ............................ TTGGTCGAGTGCGTGATTTTCTCGCCTGATGG 29038 28 100.0 32 ............................ TCGGCTGCCGGGCTTGTCATTATCGCAGGCAA 29098 28 100.0 32 ............................ AGTTCCAACCAGGCTTCGACGAGCCTACGACA 29158 28 100.0 32 ............................ TGACCAACTCCGTCATCAAAGGCGAACAGCAT 29218 28 100.0 32 ............................ ACGTCCCACGCTTTCATCACCAGCTGGGTTTT 29278 28 96.4 31 ............G............... ATGGTCGAATCCGCCCAGCTCTACGCCCCGC 29338 28 96.4 31 ............G............... ATTCATGTGCGCGGCGCGTGGCTTGATCTTC 29398 28 96.4 34 ............G............... AGATCACGGCCAAACGCCCGTCGGCCACCATCAA 29460 28 89.3 32 .T.........TG............... TGCACGCAGAGGCCGAGTCGCTGCGGACTGAG 29520 28 75.0 0 .T.........T.........C.GCC.C | ========== ====== ====== ====== ============================ ================================== ================== 10 28 95.3 32 CCTCACTGCCGAATAGGCAGCTCAGAAA # Left flank : GTAAGCGGCCAACGCCGACAGCAGCAGGTGACTCAGCCAGAACGACACCGATTGACGCAACAAACTGACGTAGTCGACCTCATCGATCCGACCCCAGGTAATCAATGTGATGACAATGCCGATCACCCCGACCGCCAAGGCAACCCAAGCCACGTGGCGCGGCAATGCCGGCCACTCGCCCGGACTGGAATTCACTGCCGCAGCCGGCAAAGGTTCGAAGGGATTGGCTTGGCTCATGAGGTACTCCCTGTCGAGGTCTGAATCCATCGAAACGCGAGAGTACCGCCCCTCCCAGCAGGGCAATAGCTCGAGATGGCAGAACTGTGCGGTATGGCCAGACAACGGTCAGCACCTACAAGGCATGCCCATACCCATTTTTCTACGACGGACAAATCGTCTTTTAAAAATCAATGAGTTGCCGGATGACGAGAAAAAATGGTCAACCACCACCGAATCCCGCCATACCTTGAGCGATGCAAGTTTGCCGGCTATCGCGCCTA # Right flank : CTTGGCAGCCACAAGCAAAAGGGCTTAACTGCCAGCATTGTTTCAGGAGCCCCTCATGGACGACATCAGCCCCTCCGACCTCAAGACCATCCTCCATTCCAAACGCGCCAACCTCTACTACCTGCAGCACTGCCGGGTGCTGGTCAACGGTGGGCGGGTGGAGTACGTGACCGACGCAGGCAAGCAGTCGCTGTACTGGAATATCCCCATCGCCAACACCACCACTATCCTCCTCGGCACCGGCACCTCGATCACCCAGGCGGCGATGCGTGAGCTGGCCAAGGCCGGCGTGCTGGTGGGTTTCTGTGGCGGTGGCGGCACACCGCTGTTCTCGGCCAACGAGATGGACGTGGAGGTCGCCTGGTTCTCGCCGCAGAGCGAGTACCGCCCCACCGAGTACCTGCAGAAGTGGGTAGGGTTCTGGTTCGATGACGGCAAGCGCCTGGAGGCGGCCAAAGCCTTTCAACTGGCGCGCCTGCAACGTATCCGCCAGGGCTGGC # Questionable array : NO Score: 5.94 # Score Detail : 1:0, 2:3, 3:0, 4:0.76, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCACTGCCGAATAGGCAGCTCAGAAA # Alternate repeat : CCTCACTGCCGAGTAGGCAGCTCAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACTGCCGAATAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 41561-45557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JPRQ01000007.1 Pseudomonas sp. 1-7 pse1-7-7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ =================================== ================== 41561 28 100.0 32 ............................ ACGCCAAAGCACTTGATATCCTGATCGACCTT 41621 28 100.0 32 ............................ ATCGAAACGAACAACGCCCCGGAGGGTAAGAA 41681 28 100.0 32 ............................ TAAGCCAGAGGTGCCGCAGCGTGACCGGATGC 41741 28 100.0 32 ............................ TTGCGAGTGGTCACGTCCGGCGTAAATCCGTC 41801 28 100.0 32 ............................ CGTACACCTGCATCAGTCGCTTAGCTACGCCG 41861 28 100.0 32 ............................ TGGGCATTGAGGAGCCTCAAGACCTGCTGACG 41921 28 100.0 32 ............................ AAGCCACACACGGCCGGGCTGCCAGCTCCAGG 41981 28 100.0 32 ............................ TAGATGACGCTCTCTGGAAGCTAAACCCGATA 42041 28 100.0 32 ............................ ATTTCGAGGTCACGGATTTCGTTGATGGTCAG 42101 28 100.0 32 ............................ TGGCTAATCGACGACGCCAAGCCAGTCAGCCG 42161 28 100.0 32 ............................ AGGAACGCTCAATTTTGCGTTTGTCGGTGGTA 42221 28 100.0 32 ............................ ATCCAGTTCGAGGCCGACATCCTCGCCGGCGA 42281 28 100.0 32 ............................ TGGCGCACCAGGCGGGCATCACGCTGCCGATG 42341 28 100.0 32 ............................ CTGCGCCGCCATATTGCGGATTGTCTCGGTCT 42401 28 100.0 32 ............................ AGTAGATGCACGTCCGTGTGCGCGGGTGGTCA 42461 28 100.0 32 ............................ TGGATATCGCCCGCATGTATCAGCGCGGCTGC 42521 28 100.0 32 ............................ TATGCGAATCGGCGCGGTCTCTACCGGCCCAT 42581 28 100.0 33 ............................ ACTGGAGGCAATCATGAGCAAGAACGATCTTTT 42642 28 100.0 32 ............................ TCGACTGCTGGCCAATTTGCTGGCCGCCCCAA 42702 28 100.0 32 ............................ TTGACCATCGGGACGGCGCGCTTGCCGCCCAC 42762 28 100.0 33 ............................ CTCTCGGTTATCAGGGTTGACTGTTGGTGAAAA 42823 28 100.0 32 ............................ TGAAAACATACAGTGGCGCCTTGCTTGTTGGT 42883 28 100.0 32 ............................ ATCAGCGCCAATACTGCCGAAACAACCCAGCC 42943 28 100.0 35 ............................ AACTGATGAAAAGCCATGTTGATCAAGACGCCCTT 43006 28 100.0 32 ............................ GCGGGTGCCAGGCCACGGTAGCGGCCTCTATG 43066 28 100.0 32 ............................ AGCAGGGCGCAGATAGTCGATAGCGCGGCGAA 43126 28 100.0 32 ............................ ACAGTGGAGTAAGGCAGGAGCGAGGATGTGTA 43186 28 100.0 32 ............................ TGGGCGCTGGCATCTATGACCGCCTGGTGGAA 43246 28 100.0 32 ............................ CGACCATGAAAGAGCTCGCCGCCGCGGCGGGC 43306 28 100.0 33 ............................ ACGATATGAGCGCTGAGCTGATCGCGCCTCGAC 43367 28 100.0 32 ............................ AGGCTGAACGAAGGGGCGTTGATGGTAAGGTC 43427 28 100.0 32 ............................ AGGTGCTAGCGTGCATCGAGCGGCAGGCGGTG 43487 28 100.0 32 ............................ AAGCCACACGCGGCCGGGCTGCCAGTTCCAGC 43547 28 100.0 32 ............................ ATGGCTGTGGTCGGCATCATCGTGCGCATGCT 43607 28 100.0 32 ............................ AGCGTGTGCTGATAACCGTAGTCGATCCCGTA 43667 28 100.0 32 ............................ ACTTGGCAGGACGAACAATGCCCGAACATCCC 43727 28 100.0 32 ............................ AGATCGGGATACAACTACCGCGACTATACATG 43787 28 100.0 32 ............................ AGTTCGAGTGGGTCTTGCAGGTTGAGCAGCAG 43847 28 100.0 32 ............................ GGGGCTATTATTGAGCGCGGCAGTAATGCTAA 43907 28 100.0 32 ............................ AAGCGCCTCACTGGCCACGGCCTGGGTGGTGT 43967 28 100.0 32 ............................ ATCCGCATGACGTGACCTCGTTCCCGTGATCC 44027 28 100.0 33 ............................ AACTGCGTTGACGCCGGGCAGGTTGATATTGGC 44088 28 100.0 32 ............................ AAGCTGCAAACCGCGCGCACTATCGGCGGCGT 44148 28 100.0 32 ............................ TCGCCAGTGCGCTCGTCGCGGTAGATCTCGGG 44208 28 100.0 32 ............................ AGCTCCGGCAGCGGGTTCGGGTCAGTCCAGAA 44268 28 100.0 32 ............................ TGCCACACGCGGCCGCAGGCGTAGAGCGTGGT 44328 28 100.0 32 ............................ ACGCCCTGCGCGTAGTTGCAGTACCTGCCTCG 44388 28 100.0 32 ............................ ATAAGGCGGCGACTAGGGATTCCAGTCGCGTC 44448 28 100.0 32 ............................ TCCAGCTCCGCCAACTGATCGTCTGTAATACT 44508 28 100.0 32 ............................ GTGGCCGAAGCGGAGAAGGTGCTGATGGCCAT 44568 28 100.0 33 ............................ TGGTCACGGATCTGGTTCAGGGTCATGGATTTT 44629 28 100.0 32 ............................ ATGAAACGGCCTGCGCTCCAGCCACAAATCCA 44689 28 100.0 32 ............................ TGGGCGATGGTGGCGAGGATGGCGCCGATGGT 44749 28 100.0 32 ............................ TTGGCGATCTGGGCGTTGCAGGTTTTGCAGTT 44809 28 100.0 32 ............................ AGCAGCAGCCAGTGCGCGGCAATCCGTCGGCA 44869 28 100.0 32 ............................ AGGCGATGCCGAGCAGTGGATAGCCTCGGATG 44929 28 100.0 32 ............................ CCGTCCAGAACGCGAACTGCAGCAGGTTTCGG 44989 28 100.0 32 ............................ ATGCTAACCACAACGGCGAGGCGAAACGAGGA 45049 28 100.0 32 ............................ ATGGGTTGGTCGGCGGCGGTGCTGGTGGCAGC 45109 28 100.0 32 ............................ TGGTCGATGAAGACCAGGACTTTGTCCGGGTT 45169 28 100.0 32 ............................ TAGCACCGGCGAAGTTTGCCCCCCTGGCGATG 45229 28 100.0 32 ............................ TCGTAATGATTTGGCGCAAACTTCCCCCACTT 45289 28 100.0 32 ............................ TTGAAGGCTTCGCCATTGGTGGCGCCGCACTG 45349 28 100.0 32 ............................ ACGAACTGCTGTGCGGCTCCGGCCATAGCCTC 45409 28 100.0 32 ............................ CGCAGATGATGGCGAAGCCGCCGCCGGTGTAG 45469 28 100.0 32 ............................ TGCTGCAGAACGCGTTGCATCCGCTTGCGCTC 45529 27 82.1 0 ......................TT.CG- | AA [45550] Deletion [45556] ========== ====== ====== ====== ============================ =================================== ================== 67 28 99.7 32 GTTCACTGCCGTGTAGGCAGCTCAGAAA # Left flank : AGCGCTGGATCGGCTGATGGCGCTGAACTGGCTCAGCGGCATGCGCGACCACTTGAACCTGGGTGAACTGGCGCCCATCCCGGCGAAGGTGCGCTGGCGCTGCGTCAGCCGCGTACAGGTGGACAGCAACCCGGAGCGCGCCCGCCGCCGCCTGATCAAGCGCCACGGCATCAGCGAAGCAGAGGCGCGCCAGCGCATCCCCGACAGCGCCGGCAAACGCTGCGACCTGCCTTATGCCACCTTGCGCAGCAACGGCAGCGGTCACAGCTTCCGCCTGTTTATCCGCCACGGCCCACTGCTCGACAAACCCACCCCCGGCACCTTCGGCGCCTACGGCCTTAGCGCCCAGGCCAGCGTGCCCTGGTTCTGACCCTTTTTCCCAGCCCAAAACGGAGCCCTTGCAAAATCAAGCACTTGCAAGCGGCTCCGAAAAAAGGGGTAGCACCGGAAAAATCGGGCAGGTTCTTTAACAATCAAGCCGTTAGGGTTATTAGGCTCTA # Right flank : GCGCACTTCGCTTCGCTCCTGAGCCCGCCCTACGCAAAAATCCGTGTCCGGAACCAAGCCGCCGGTCTAAGCGGAATCGCAGATACGACTCGCTGCCGCACGGACTTTCAGGTGTCCAAACTACGAAACATCACATGGCAATCCACCAGGCCATACCGGGCGTGGCGGTAGGCCTTGGGCAAGGTGCCGACTATCGCGAAGCCGTGTTTCTGCCACAGCGCGACCGCGACCTCGTTGGTGGCCACCACGCTGTTGAACTGCATGGCGCTGAAGCCCAATTCACGCGCCACCTGCAGCGAATGGGCGCAGAGCCGGCTGGCGATGCCGCGGCCACGGGCGGCCGGGGCGGTCATATAGCCGCAGTTGCACACGTGGTCACCCGGCCCAGCGGCATTGGCCTTGATGTAGTAGGTGCCGAGAATCTGCCCGTCCTGCTCGGCAACGAAGGTGGCGCGCGGCAGTTCGACCCAGGTTTTCCAGGCCGTCTCACGATCCATGTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTCAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTCAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //