Array 1 12842-11753 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMX01000016.1 Zymomonas mobilis subsp. pomaceae strain NBRC 13757 sequence16, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 12841 33 97.0 34 G................................ GATGATAAAGCCGCCAAGGCCGTGAAAGACGAGG 12774 33 97.0 32 C................................ TCTCATGATGCTTGCGCTTTTGTTGTCATGAA 12709 33 100.0 33 ................................. TAAGATCAATGAGGGGCATTGTGTCCCAGATTC 12643 33 97.0 33 G................................ ATATAGTTTGGGTTGATTATCAGTGGTAGTTAT 12577 33 100.0 34 ................................. AATATTATTGAAACTCAATTCGTAGGCAAATCGT 12510 33 97.0 33 G................................ TCGGATTAAATAAACACTGAAAAACAATCCCGT 12444 33 100.0 33 ................................. CCCAAACAGCCCATTAATCCATACAGCGACATA 12378 33 100.0 33 ................................. AAACCGTTTCTAGTGATCGCAATCCAGAACGCA 12312 33 100.0 33 ................................. CAAGACATTAATAAAACCTTTCTTAGTTTTGAG 12246 33 97.0 32 G................................ GAGGTTAAGCGTCAAGAAGCATTATCCATCAA 12181 33 100.0 33 ................................. CACCCACTGACCGCACCGAGAGCGTCACCTTAA 12115 33 97.0 32 A................................ TATCGAAGCATGGCGAGGAACGGGCTGCGATT 12050 33 97.0 34 A................................ CTTCAATGGTCAAGGGTCGCCTTAATATCACCGA 11983 33 100.0 33 ................................. TGTTATGGATAACCCGTGAAAAATGGAGGTCGT 11917 33 97.0 34 C................................ CGTGATGTGTTTTCTAAAACTCTGCCTTTGGCCA 11850 33 97.0 32 A................................ TTTGGATGCAGCTCGCTTGAAATCAGCATAGG 11785 33 97.0 0 G................................ | ========== ====== ====== ====== ================================= ================================== ================== 17 33 98.2 33 TGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Left flank : GTGTTGGTTCTGGTAACTTACGATGTCAGCACGACGGAAGGGAACGGGGCAAAACGTCTTCGTGCAGTCGCAAAAGCTTGTCGTGATTTCGGACAGCGTGTACAGTTTTCTGTATTTGAAATTGAGGTAGACCCTGCTCAATGGGTAAAACTTAAGGCGCGACTAGAAGATATTATCTTACCAACAGTGGATAGTCTCCGCTACTATTATTTAGGGGCTCACTGGCAAAAACGGATAGAACATGTTGGGGCAAAGTCTGCGACGGATTTAAATGCCCCGCTCATCATCTAGTCTATCTTCTATTCCTGATACAATTTTTCTTTGGTGCGAACCACAAGCGTGCTGCACGACTCGCGGAGGTTCGCATCCAGCTTTGTTATTGAAATTACGCAACAATTTTGTACCCAAAAGAATACTGTTACCTTAAAGGATTTTATTATCTCCCTCTTCGCATATTTACCCTTTTAATTTTAATCTTTTCTGTGCTTTACAATAGGGGC # Right flank : AACTCCGATATTTGGATTGAAATCGAGTGCCGCTTTCCTCGCCTTCCTTCATATCGCGGCTGTAAAATTATGGTTGCCTTCCTTTGTCAACAGAACCTAAATACCTTTCAAATCTGGTTTATAAAGCAAAAATGGAAGGTTACCTTATTTCAAGAAGGAAAAAATTGAATCTTCCTTGGCTGGAAAGGCGAATCCGGTTTGCTTAAAACCTCATTTCAAGACGAAAGGAGGTCTGTAGTTTTATGGATAAAAATAAAAAAGTGGATTTGGACAAAATTTTTCACGAAATGGATGAATTGGGCATAGATGGAAATCATCCAGCTATGAAAAAATCACCAGAAGAAAGCAAAATTCTTGAATAATTTGCCGAGATAAACCGATTTATTGATGAAAAAGGTTTTATCCCCGGTGAAAATCTTGAAAAGCGTTCAATGAATTTATCCGAACGTCGCTTAAAAAAGCGACTTTCTATCTATCGCCAAACAGCGGAATATACAGCC # Questionable array : NO Score: 8.81 # Score Detail : 1:0, 2:3, 3:3, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.64, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTCGCCTCCTTCGCGGAGGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGTCGCCTCCCTCGCGGAGGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.10,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 62289-62988 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMX01000008.1 Zymomonas mobilis subsp. pomaceae strain NBRC 13757 sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 62289 29 100.0 32 ............................. TCGATGATAGTTCTTCCAACCATCTCATTGAT 62350 29 100.0 32 ............................. ATCCTAAAACTCTAGTTCCGGTATTCGCACGT 62411 29 100.0 32 ............................. TCTCTACTGGCAAGGGTGGCCAGTCAGTGAGA 62472 29 100.0 32 ............................. GTTTTGTATAATCCAATTCCAGTGCTTGCTAC 62533 29 100.0 32 ............................. CAGGCTGTCGGATGCGGTTCCGTTGCCTGTCC 62594 29 100.0 32 ............................. AAAAAACGACATATTTACGATTATTTTTCAGC 62655 29 100.0 32 ............................. TCTCAACGCCAGTTATCGTTGTCCGTGTCGCA 62716 29 100.0 32 ............................. CGCCGCGATAACATGAGACTTTCCCGTACCTT 62777 29 100.0 32 ............................. ACGCAATTAACACATACTGATTAACGTTTTTC 62838 29 100.0 32 ............................. TAGGAGATTGCTTCATGCTTTGCCCGCGTACA 62899 29 100.0 32 ............................. TTGCACCAATCTGGCGTGCCTTCAGGATCATT 62960 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : ACATTGAAAAAATTCTGCTCGCAGGGGGATTGAAACCGCCAGACGAAACGGAAGATGCACCCGAAGCGATTGATCCAGCAATTCCGCGTGAAAAGGCATCTGGTGATGATGGTCATCGTAACTGAAAATGCACCGCCCCGTTTGCGAGGGCGATTAGCCCTCTGGCTATCGGAAATTAGGGCTGGGGTATATGTCGGAGCGTATAACCGTCGCATACGTGAACGAATATGGTCTGAAACAACAGAAATGATTGAAGAAGGTAATGCCGTAATGGCATGGAAAGCGCCCACCGATTCAGGTTTTGCTTTTGAAGCGATCGGCGTTAATCGACGAGAAGCTATAGATTTTGATGGCCTCACTTTAGTGCGCTTCAAACCCCTTGAAAAAGAGACCGAGATGCCATTTTCGGAATAGTTTTTTGGCTCTAAATATCCTATAAAAAGTTGGTAGATTTTTTGACATCGTGAATCTATTTGAATATCAAGCACTTACAAGGATGA # Right flank : TTAAGCGCTCTAGTTATATTTGCCTTCGCATTTATGCCTATCAGCATTGTTAATGCTAGAGGTTATAGTGGATATCATAGTTATAATTCGACCAGATCATCTACGAGTTCATACTCTGCCCCTAGAGAGCATTATACTCACGATTACTACCGTCAGAATGGAACACACGTGAATGGATATCATGCAACAAATCCGAACAGTACAAAAATGGATAACTGGAGTACTCGGGGTAACGTCAATCCTTATACTGGACAGCTTGGAACAAAAAACCCTTACTAATCTCATTTAAATCAGACTAACACATAGAAATCCGAAAATTTATACTCGAAACAAGAAATTTAAATATGAATATTGGTGAGCTTGAATTTGAAATAGCAAAGCTATGCGGGATCGCTCAATTACTCAAAATACAGACCGAAATCGAAGGTTATTTATAAAAATATATTTTAATATTTTTATTTTTTAATAAAATTATAATTTAATAAGATAAAGCCAGCCCC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 23305-22300 **** Predicted by CRISPRDetect 2.4 *** >NZ_BJMX01000003.1 Zymomonas mobilis subsp. pomaceae strain NBRC 13757 sequence03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 23304 29 100.0 32 ............................. GAAATCTCGATTTCAATGCACCGACTGGCGCT 23243 29 100.0 32 ............................. CCCCCGCAGCACTAATCGCTCGGACTATCAAT 23182 29 100.0 32 ............................. GCTTCCGAGACTTTGCCGATTTCAGCAGAAAG 23121 29 100.0 32 ............................. GCTACGCAATCCTGACGGTGTTATTATCAATC 23060 29 100.0 32 ............................. AAAAAATAGATAGATTAATTCCAAATTATGAC 22999 29 100.0 32 ............................. CCACGCGAAAAAAGAAGGGATTATGGATGCCG 22938 29 100.0 32 ............................. GAATTACCTTATCTCGCTCTGATGGGCAGGAT 22877 29 100.0 32 ............................. CCGTTTGAATGAATTTCGGCGTTGCTCGATAT 22816 29 100.0 32 ............................. ATCAAGCATCGAATTCATATCAAAGACCATCT 22755 29 100.0 32 ............................. GGTTATGTCTGGGCTAATTGATACCGGAACAG 22694 29 100.0 32 ............................. CTTCGTCGTGCCATTGTTCAGCGCTGGCAGGA 22633 29 96.6 32 ............................A AAAATGGCGGTTGTTGCTTTTGATCCGGACGT 22572 29 100.0 32 ............................. CGTGGACATTCTTTAAATCCAAAATGATGAAA 22511 29 96.6 32 ...........T................. TCTTGGCTCATTTCATCACATCGCGAACAATA 22450 29 96.6 32 ...........T................. CGAACCCATGATCTGCACCCCTGCCACGTGGC 22389 29 96.6 32 ....................A........ TTGGGGGAAGCGGGTTTCTGTCATGTTCGGCA 22328 29 69.0 0 ........T..TG.G........T.TGGT | ========== ====== ====== ====== ============================= ================================ ================== 17 29 97.4 32 GTGTTCCCCGCCCACGCGGGGATGAACCG # Left flank : TCCAGTCGGGAACATGCGGCTTGGGCTATCAGTGAAATGGGAATAGAAGCGGTTATTGCACCGCGCTTTTCTGATATTTTTTCGGGTAATGCTTTTAAAAATGGCCTATTAACGGTAGTTTTACCCGAAGAAACAGTTGAGCGTTTGTTAGAAGTTGCCAAAACAGATCCTATTACGATTGATCTTGAAAATCAGGTTGTCACCACGCGGTTCCAAGATCGTTTTCATTTTGATATTGATCCTTTCCGTAAGCGTTGTTTGCTGGAAGGCTTGGATGAAATTGGTCTTACCTTGAAAGAACAAGATAAGATTAGCCGCTATGAAGATGTGTTAGCCTCTGATCGGCCTTGGGTTTAAAATTTCTTCGGATGTATTCTGTCTATTTTTTGATGAACAGCCCGTTTTTGCGGGCTGTTTTTTTGCCCTGAATAATCTATAAAAAGTTGGTAGATTTTTTGACATCGTGAATATTGTTTAATATCAATCCCTTATCGGGATGA # Right flank : CGGGATCGGCTTTTTAAAATTTGTTCCGCTAGTTTATAATCCGATAATTTATCGACATCGATACCCGCTTCTGCCTGCGCTAAAACAACAGGTTGAATAGTAAGGCCAAGCGTATGACCGACTTGGGTTAAGGCTTTTTCAAAGCTGATGGTGCGTGTAACGGCACGGATAGCAAGGCAAAGCCCGAAATGGCGGATAAGTTGCCATGCTTTTTTGCGATCTTGTTCTATCATTGACCATTGGTGAAGCGCGCTTTTTACTTTCTCATTTCTCATCCCAAAAAGATTCGCGCCACTATAGGCCTCATCCGAAAATTTGAGCCATGTACGGCGATTTTCTGGATAATGTTTTAAAATAGTTGTCCGGTTTACGACCCCCACACTAAGATCTTTATCAGGGGTTTTCATTAAGAATTCGGTTATAATTTCGGGTGTCAGTAGCGGATGATCCGCCGTTGTTACCAAGAGTGGCCATGTGATCTTTTTTTGATCAATTAAGGT # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.87, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCCCACGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [4,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCACACGCGGGGATGAACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //