Array 1 8260-7317 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAM01000110.1 Salmonella enterica subsp. enterica serovar Edinburgh strain 95-0382 NODE_110_length_13026_cov_3.67153, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 8259 29 100.0 32 ............................. GATGGGTATTTATTTCTGGCTTTGCTCTGTCA 8198 29 100.0 32 ............................. AATTCCCGGACATGACAATGATCGGCGGTAAA 8137 29 100.0 32 ............................. GAAACGCAGCGCGGCCTGACCTGGTACAACTA 8076 29 100.0 32 ............................. ACGTGGATCTGGTTTCCGGTACGGTTCACGTA 8015 29 100.0 32 ............................. GGCGGCGTTGAGGGGGTGGGCTCTACCACAGA 7954 29 100.0 32 ............................. GAGGGTAATACACGTATCACTACTGGATATTC 7893 29 100.0 32 ............................. GTTATTTATATCGGTGCTCACATTTTTAGCGG 7832 29 100.0 32 ............................. GCGGTAGGGCGCCTGCTGGGGCCGCCGCAGGA 7771 29 100.0 32 ............................. CGAGCTAAGTAAGTCATGGAACCAATCCCCCA 7710 29 100.0 32 ............................. GCGGATCAGATAGAAAAACTATTCCGACAGTT 7649 29 100.0 32 ............................. CCATTTGCTCGCCGTTCCGGCCGAGTTCTGAG 7588 29 100.0 32 ............................. TGACTTGCGTTGGTAGCGTAGTCCCTCAGTTT 7527 29 100.0 32 ............................. TCATCTGTCAGGCGGTATTCCAGTTCGGCAGG 7466 29 100.0 32 ............................. GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 7405 29 96.6 32 ............T................ TACCAACAATTCAGCGTTACGCCAACGGTAAC 7344 28 86.2 0 ...............A.AA......-... | ========== ====== ====== ====== ============================= ================================ ================== 16 29 98.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGACAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACACACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGACCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCATGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGCAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 6127-5365 **** Predicted by CRISPRDetect 2.4 *** >NZ_MZAM01000089.1 Salmonella enterica subsp. enterica serovar Edinburgh strain 95-0382 NODE_89_length_15319_cov_3.86438, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 6126 29 100.0 32 ............................. AGGGCGAACTGATCGGTGAAAACACGGCAACC 6065 29 100.0 32 ............................. AGTATCTTAACGGGATGAATGATAATGGTCAA 6004 29 100.0 32 ............................. CAATACTGTTCCATCATTAGACTTTCTGGATT 5943 29 100.0 32 ............................. GGTAATACTTTTCGCGTAGCGTGAATTTGTTT 5882 29 100.0 32 ............................. GCGTTGCACTGACTTAAACACAGATTCGCGGG 5821 29 100.0 32 ............................. ATATCAATAAAGAGTTAATTGTAGTGCTTGAA 5760 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 5699 29 100.0 32 ............................. GTATTCGGCGACGTTCTGTTTATTTTTTATTA 5638 29 100.0 32 ............................. CAACTGGGGAATTTGCTGAACTCGGCAGAAAC 5577 29 100.0 32 ............................. GGCAAGAAGTACTCATGGATTGCCCGCAACAT 5516 29 96.6 32 .......T..................... GTTCCGTGTCATTTTTATCGCCAGCACGCCGT 5455 29 100.0 32 ............................. AGTGAGCAGGAGCGCAACGTTTATCAGCTTAT 5394 29 100.0 0 ............................. | A [5367] ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGTGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAATCGACGTATTTCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCAATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //