Array 1 476992-478891 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHR010000004.1 Salmonella enterica subsp. enterica serovar Singapore strain SGEHI2016-PSU-BS-154SL opera_scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 476992 29 100.0 32 ............................. GGCCAGCCGAGGTCTTCGGAAACATACCCATC 477053 29 100.0 32 ............................. GTCGAACCATGTATTTGCGTTACCGCTTGCAA 477114 29 100.0 32 ............................. GCTATTACGGCGACACCGCGCTTGTTGTCTAT 477175 29 100.0 32 ............................. TCGACCCTCTTTAACCGGCTGAATACTCATCA 477236 29 100.0 32 ............................. CCGCTCTGAATAGTTGACCACTCAGACCACGC 477297 29 100.0 32 ............................. CAGCCGGACGGCACAGGGTTAACCGATATTTA 477358 29 100.0 32 ............................. ACACCCGTCGGGGGAAGCAAGGCGGACGGGAC 477419 29 100.0 32 ............................. GATAGCGCCTCGCCCACAGTTGCAGTGTTTGC 477480 29 100.0 32 ............................. GCCCCGCGTCTGTTTTGGCTCGTCGGGCCAAT 477541 29 100.0 32 ............................. TCCACCGCCTGGCGCTTGAAGGTGAGTTACTG 477602 29 100.0 32 ............................. GAAAAAATGTCTGCCAGTTTTAAAGTAACCGG 477663 29 100.0 32 ............................. ACGGTGAGCCGCGGCTACATATCAAAGAGCAG 477724 29 100.0 32 ............................. GGCGTGCGCACTCAGTGCGTACTGGACGCATT 477785 29 100.0 32 ............................. CCCCCTCTCATTAAATATTTGGCGTAATCACG 477846 29 100.0 32 ............................. ACAATGTGTGCTCGTCCCATACGCGTTTGCTG 477907 29 100.0 32 ............................. CGTCAGCGCGGCATTGAGGCTGGGGACCGCCC 477968 29 100.0 32 ............................. AAAAAATCTGGACCCGTCACGCCTGATTAATA 478029 29 100.0 32 ............................. ATTTCAACATCTAATTTCCTTGCATTAGCATT 478090 29 100.0 32 ............................. TGGACACGTTTAACGTTGACGTTGATAACATC 478151 29 100.0 32 ............................. ATAATTGGTAGCACCGGTACGGGGAAATCAAC 478212 29 100.0 32 ............................. ACTGGACGCCGCAGGGAGTTCTTATCAACGCT 478273 29 100.0 32 ............................. CCTGATTAATCGGGGGATGTAATGGCAAACGA 478334 29 100.0 32 ............................. TATTCAGCGTCAGATGAGCCTATGTCGCAACG 478395 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 478456 29 100.0 32 ............................. GAACGACCGGACTTATTCGCGCACACGAATGC 478517 29 100.0 32 ............................. AGGGATTACGCACCGGCAACCGTTGTTTGCCC 478578 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 478639 29 100.0 32 ............................. CCGTGGGGATGGCCGTGGGATGCGTCATGGTG 478700 29 55.2 14 ..............CTTTCATCCGTT.A. GTGGATTTCATGAC Deletion [478743] 478743 29 100.0 31 ............................. ATGTTTAATTTTGTAGCCGCTACCTATCGCC 478803 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 478864 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 32 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.04, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 495174-496730 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADDHR010000004.1 Salmonella enterica subsp. enterica serovar Singapore strain SGEHI2016-PSU-BS-154SL opera_scaffold_4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 495174 29 100.0 32 ............................. CTCAAAATATTCTCTTGATTTTAAACATTGAG 495235 29 100.0 32 ............................. ACGCCCCTTTTTCAGGTGTTGATATTGCCGGG 495296 29 100.0 32 ............................. ACGAGCGAGCCGGCATCCGTGAGGCCCGTGTC 495357 29 100.0 33 ............................. ACTACATAGATAACCAAAAATCCACTGGCAAGC 495419 29 100.0 32 ............................. TCTATCTTCAAATTGTTCTGATGGTGGAAACG 495480 29 100.0 32 ............................. TATCGTTCCACTGGTTCATCAGCGTCCAGTTG 495541 29 100.0 32 ............................. TGCCTGGACACTGTTGCGTCAGCGGGAATACA 495602 29 100.0 32 ............................. GCCACAATCAGATCGAAACGCTCTGGATCACC 495663 29 100.0 32 ............................. GGAGCTGAGGCATTATCATTTGCTCAGGATAG 495724 29 100.0 32 ............................. TCGCAGAACAGCTCTGCTTCCTTTGCGGAGAC 495785 29 100.0 32 ............................. TTGCGCTGTTCTATTGGCGGCAATTCTCTGAA 495846 29 100.0 32 ............................. GGACAGCACAGTTGATTACAGCAAAATTTACG 495907 29 96.6 32 ............T................ ACACGCCAGCCAACAATATTAATTTTGTCGTC 495968 29 100.0 32 ............................. CCTTGGCGGCAGCCACCTGAGCAACTGTCGGG 496029 29 100.0 32 ............................. CAGCTTCTTAACGAGGAGATTAACAGCGACGT 496090 29 100.0 32 ............................. TTAATGCGGTCATTGGTCATGTCTCTAAAAGA 496151 29 100.0 32 ............................. ACTGTAGTTGCGGGTCAGGTTCCGGAATATCA 496212 29 100.0 33 ............................. GGATAGGGATCGGTAACTTTGCCATCGATCGGC 496274 29 100.0 32 ............................. AGTATTGCAACTACGGCTGACGCGCTGATCGA 496335 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 496396 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 496457 29 100.0 32 ............................. CACCCAGCGGGTAAACTGATCAGCAGCAGCAC 496518 29 100.0 32 ............................. AACCCTCAGAAAATAATCCAGACGTTACCGAA 496579 29 100.0 32 ............................. GCAGAAACAGAAACCGGATATGAGCCATCCAT 496640 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 496701 29 93.1 0 A..............A............. | A [496727] ========== ====== ====== ====== ============================= ================================= ================== 26 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAATCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTAGGTAATAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCTCCCTGGCAGCGCTTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGAAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //