Array 1 1711-2636 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBE01000014.1 Shigella sonnei strain ECH+13 NODE_35_length_46735_cov_84.352_ID_69.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1711 29 100.0 32 ............................. GAATCATGATTCCGGACGACGTGCTGGCGCGA 1772 29 100.0 32 ............................. CCGCTGCGCTGGCGTCAGGCGTACCGGTGGTG 1833 29 100.0 32 ............................. CCTCGCTGTAAATTCCAAAAACGATCTCTATA 1894 29 100.0 32 ............................. ACAGTACCGGAGTTTGACGGTGCCAACGGCGG 1955 29 100.0 32 ............................. ACAATCAGGGAACGATTGTTGACACTGTAAAA 2016 29 100.0 32 ............................. ACCTGAACGAAACGCAAAATAGTTTCTTTATG 2077 29 100.0 32 ............................. TTCGTTTTTCGCAGCATTAACTTTTTGCCGCG 2138 29 96.6 32 ............................T TGATCCGCGACCGCCAGATGGCGCAGCCTGTC 2199 29 100.0 32 ............................. GTGCGCCAGCTATAAAAAACTCACCATCAACA 2260 29 86.2 12 ...............C.A.C.....G... CAAACAGAGCCG G [2284] Deletion [2301] 2302 29 100.0 32 ............................. CAAAAAAATAATATCCGGCAGTCTGTACGGTA 2363 29 100.0 32 ............................. TCGGTTTGCGCGTATTGTTGTTCGGGGTCTAT 2424 29 100.0 33 ............................. TAGGTAAATCACAGCTATTTGATAAGGGCGTGT 2486 29 100.0 32 ............................. AGTCGAAATGAGGCGCGTGTTCTGGAGGATAT 2547 29 100.0 32 ............................. GAGCCTGACGAGACTACTGAGGCCGTTCTGTC 2608 29 93.1 0 .A..........................A | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.5 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTAATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.08 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:-0.10, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 28186-29373 **** Predicted by CRISPRDetect 2.4 *** >NZ_NQBE01000014.1 Shigella sonnei strain ECH+13 NODE_35_length_46735_cov_84.352_ID_69.ctg_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 28186 29 100.0 32 ............................. TTACCGCTCTACGCCGCCCCGCCAGCGCTGGT 28247 29 100.0 32 ............................. AGCAGCCAGTGCCGGTAGTGCCTGGTGATGGT 28308 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 28369 29 100.0 32 ............................. GGTTACGCCTGCACAGAGTACAATGCGTGGGG 28430 29 100.0 32 ............................. CGGTGATGCGCGGTATCGATCAGCATCCGGCT 28491 29 100.0 32 ............................. GCTCATTTCAAATGGTCAGGTCCGGTGGTTTT 28552 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 28613 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 28674 29 100.0 32 ............................. ATGACCATTGGTGAACGCATCCGCTTTCGCCG 28735 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 28796 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 28857 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 28918 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 28979 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 29040 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 29101 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 29162 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 29223 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 29284 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 29345 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 20 29 99.8 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //