Array 1 164405-162725 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIR010000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 02/2011 montagem_read_s_w2_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164404 29 100.0 32 ............................. CCCCTCGCCCTCGATCTGGCGTTAGTTACTGG 164343 29 100.0 32 ............................. TCACACGTTAGATCAACAGTTGTGTCCGTATT 164282 29 100.0 32 ............................. GGCCTGATGAAAATTGCCGATAGCATGGACAA 164221 29 100.0 32 ............................. TTTACAGGTCATTTTGCTGTCCTCATTTTTGG 164160 29 100.0 32 ............................. ACCGCAGGTGATATTGACACCGGAGCAGGGGG 164099 29 100.0 32 ............................. CCAGTAGTCAAACCCCAGATTGAGCAGTGAGA 164038 29 100.0 33 ............................. CAGCAAAAGTAAAAACCGCTTCCGCCCAATTGC 163976 29 100.0 32 ............................. GCTACGGTAAACGTGAATGTGCGTATTGACGC 163915 29 100.0 32 ............................. GAATATAGGGCTTCATATTTGCCAGTTGTTTT 163854 29 100.0 33 ............................. ATCGGGCGGGATATGTGCTGGATTCGTATTAGC 163792 29 100.0 32 ............................. GTTGAATAATCCCCGCACATCATCCTGTAAAA 163731 29 100.0 32 ............................. CAGTCTGCGGGGTTTCCTGCGTGTAATGAAGT 163670 29 100.0 32 ............................. GGAAAAAACGCTTGTCGCCAAGTATGTTTTTG 163609 29 100.0 32 ............................. CACAGAGTTAAACGCCGCTGCAGCGCTGTTTA 163548 29 100.0 32 ............................. TTTTTATCACGCTCAGACCTGAAAACAACCGA 163487 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 163426 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 163365 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 163304 29 100.0 32 ............................. TTCCATATTCAGGATCATATCCGCACGATAAC 163243 29 100.0 32 ............................. CCTGACGCCAACGGAAACGTGAAAGTCTCAAC 163182 29 100.0 32 ............................. TGTTCCCCCAAGGTTCAAAAATTCAATATGAG 163121 29 100.0 32 ............................. GATGACCCGTATACGTTCAAAATCAAAATCTA 163060 29 100.0 32 ............................. CAATAGGGAAAATGGCATATGAGGGCGCGCAA 162999 29 100.0 32 ............................. TAAAACGATATTCCCGGATAAAAACGGAAAGC 162938 29 100.0 32 ............................. CCGACATGGGCAGGATTGCTGACGTTAGTCGA 162877 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 162815 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 162754 29 96.6 0 A............................ | A [162727] ========== ====== ====== ====== ============================= ================================= ================== 28 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGAGAATAAAAGCGCTCTTTCCTTTAATTACTTTGCCTGAAGCCTGGGATGAAGATGAGGGTATCGACCAATTTCAGCAACTTTCCTGGTTTATTTCCGCTGCGGTTGTACTGGCTGACTGGACTGGTTCTGCCAGCCGTTATTTTCCGCGTACTGCGGAAAAAATGCCTGTTGATATCTACTGGCAGCAAGCTCTCGCTAAAGCACAAACTGCCATTACGCTATTTCCCTCAGCGGCGAATGTGTCTGCCTTTACGGGCATAGAAACGCTTTTCCCTTTTATTCAGCATCCCACACCGTTACAACAAAAGGCGCTTGAGCTGGATATCAACGTGGATGGCGCCCAACTCTTTATTCTTGAAGATGTCACTGGAGCCGGAAAAACAAAGGCGGCGCTCATATTAGCTCATCGACTGATGGCGGCAGGTAAAGCGCAGGGACTCTATTTTGGACTGCCGACAATGGCGACAGCCAACGCGATGTTTGAACGTATGGCGAAC # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 174146-173139 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHPIR010000001.1 Salmonella enterica subsp. enterica serovar Worthington strain 02/2011 montagem_read_s_w2_contig_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 174145 29 96.6 32 ............................A ATGCCGCCACTTCCATTTCGTTCAAATGCCGC 174084 29 100.0 32 ............................. AGAGCAGCTTGCTCACTACCGGGGCAGAAGGG 174023 29 100.0 32 ............................. TATTTGGACAATCAGGTCGAGGTTCAGTATGA 173962 29 100.0 33 ............................. TCACAAATGCGAGGAGTCAGCCCAATGAGCAAC 173900 29 100.0 33 ............................. ACGGGACCGATATTCTGCTGCCCGGGGGCACGC 173838 29 100.0 32 ............................. GAGTTCAGTCACTTGAATGATGCGCGGGAATA 173777 29 100.0 32 ............................. GTCGTCTGGCATATGTGCGTAGCCACCTCGCA 173716 29 100.0 32 ............................. CGGATGATTCGCGCATGACTTGGGCTACTGCG 173655 29 100.0 32 ............................. GGATATCGAACTCTTACCGCCGACGATATTGC 173594 29 100.0 32 ............................. AGAGATTGATTAAATGAACAGTAACAAACTAA 173533 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 173472 29 96.6 33 ..........A.................. TCTGGTGCTGGCGGTTTACTGGGGAGTATTGGC 173410 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 173349 29 93.1 32 .........C..T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 173288 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 173227 29 96.6 32 ............T................ AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 173166 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGACATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //