Array 1 310605-311913 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUS01000002.1 Salmonella enterica strain BCW_6505 NODE_2_length_341417_cov_2.74829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 310605 29 100.0 32 ............................. TGACCGGCTCAGATATTGATGTTATGTCGTAT 310666 29 100.0 32 ............................. GGATCTTGCTGGATATTGATTCGCCAGGCGGT 310727 29 100.0 32 ............................. GTCAGTCATCTGTTTACAGTACAATGATCGAT 310788 29 100.0 32 ............................. TATGAAATGCGGCTTAAAATTTGCCAAGTGAA 310849 29 100.0 32 ............................. CGTATGCGTTCACCAATGGTCATCTTTTTCAT 310910 29 100.0 32 ............................. GAGTCAGCCCAATGAGCAACATCGACAAATCA 310971 29 100.0 32 ............................. CAAAACGGCCTGGTAAGCTGGAATGACAACGC 311032 29 100.0 32 ............................. GCAACCCCGTTTCGCAGATCGCCGCCCTCGGA 311093 29 100.0 32 ............................. CCATAGAGTTATAGTTACTTTTGTCCGCAAAC 311154 29 100.0 32 ............................. GATGCTGGGTATGGCAGGTATGATTTGTGAAA 311215 29 100.0 32 ............................. TTTGCTTCCCTCGGGGCCGTGTCGCGCCCATT 311276 29 100.0 32 ............................. GGCGGCGAGTTCGGCTGGGTCTTTGATAATGA 311337 29 100.0 32 ............................. TCTGAATGCCTTTTCTTTTACATCTGGATCAT 311398 29 100.0 32 ............................. ACCATAACGAACCATTTCATCCAGCATGCGGC 311459 29 100.0 32 ............................. CCTTGTTAAATACAGGCGGTGGCGGCGGGGCT 311520 29 100.0 32 ............................. ACAACCCGGAAATTAAATTTTATCAGCACAAA 311581 29 100.0 32 ............................. AGTAATCAACTCAATGCGCTCACGACTCAATG 311642 29 96.6 32 ............................T CGGAAAAATGCGCGCCGCAGGGGATGATGGGC 311703 29 100.0 32 ............................. CGTTGGGTTGTTTACCTGAGTATTTAGCAACT 311764 29 100.0 32 ............................. GTGGTAATGGTGCCCGGTCCGGCCGGGTCGCA 311825 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 311886 28 93.1 0 .......................-.G... | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGTTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGAGCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 328620-330174 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYUS01000002.1 Salmonella enterica strain BCW_6505 NODE_2_length_341417_cov_2.74829, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 328620 29 100.0 32 ............................. CACCGGAACTGCCTCGCCCCCCTTCAGAATTA 328681 29 100.0 32 ............................. CTTCCCTGCGAACTCTTCTGCCATCCTGAACC 328742 29 100.0 32 ............................. CCGCGTAAATTTTCAGCAGTTGATCAACCCGG 328803 29 100.0 32 ............................. GCTCCGCAACGGTACAGAGCAAAAAAACACGC 328864 29 100.0 32 ............................. CGCACTCAGGCCGGAAAAGTTATTTACGAAAT 328925 29 100.0 32 ............................. ACGCGCCGCCGCCTGGCGGCTTTAACTCAGGT 328986 29 100.0 32 ............................. CAGCCTCGTCCGACACGGATCAGGGTGAGGTA 329047 29 100.0 32 ............................. CCGTGATTCGACCTCTAAATGGGTTCTCATTC 329108 29 100.0 32 ............................. AGCTTTGGGGAGGGGTTGTTTCGTTTGGTGAG 329169 29 100.0 32 ............................. TCGGTCGATCTGCATATCGATACCCGCGGTTA 329230 29 100.0 32 ............................. CACAGAAGACGATAACGGGAGATTTCCCTAAG 329291 29 100.0 32 ............................. GTGAATGCGCAGAATATAGATGGGGACATTAC 329352 29 100.0 32 ............................. CCACAGCCGCCGCGACAATAAATTAACTCACT 329413 29 100.0 32 ............................. TGATGCTGGAACATTGGGAGATGATCAACACG 329474 29 100.0 32 ............................. TTTATTTTTTATTCGATATTGTTTTTGAATAT 329535 29 100.0 32 ............................. GATTGGAAAACCAATCTCTTTGTTACCACATC 329596 29 100.0 32 ............................. ATCACGCACCCGAAACCTACACCGGCTTATTC 329657 29 100.0 32 ............................. CATCCCCTGACGCTGTAGAGCCATTTCCTGTT 329718 29 100.0 32 ............................. CGACATTTCAGCGGCTATCATCGAACAGTGTG 329779 29 100.0 32 ............................. AAATGTTTAATAAATACAGCAAATGCATATCT 329840 29 100.0 32 ............................. AACTGGCATCCCTCATGGTTGAGGGATTCAGT 329901 29 100.0 32 ............................. TTCGCGCTCAACTTATGGCGGTATTAAACACC 329962 29 100.0 32 ............................. CGCTTTATCGTAACTGTTTACCCGATAGTTCT 330023 29 100.0 32 ............................. GCTATCCAGCCGAGAAATGGCAGAACCGGTAT 330084 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 330145 29 93.1 0 A...........T................ | A [330171] ========== ====== ====== ====== ============================= ================================ ================== 26 29 99.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAAAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //