Array 1 166130-164700 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 166129 30 93.3 37 ......G.............G......... TCGCAAAGAAATTCGAAACATTCGACGGAAAAATCGT 166062 30 100.0 38 .............................. ACGCTCAATTGAAAAGGCATTATACGAAAAGGCTCATA 165994 30 100.0 36 .............................. TGAAGGAATGGAGAAGCGTAACAATCTATTATAACG 165928 30 100.0 36 .............................. TGTGCCTTATTATGTCTTCATCTTCTACTGAAACCT 165862 30 100.0 38 .............................. AAGCGAACCAAAAATCGAGGAAAAACTTTATAGTTCAT 165794 30 100.0 37 .............................. ATTCTCCAGTACACACCACCTTCTACATCAAACCTTC 165727 30 100.0 37 .............................. TCGATTGCAGGGGACTCAAGAAGCTCGATACGGTTGT 165660 30 100.0 36 .............................. TTTTCCTCCATCGTTTCACCACCTTTCCTGTTGTAT 165594 30 100.0 37 .............................. CACTAAAAGTGACCGTTTTACCTACCCAATTACCTAA 165527 30 100.0 36 .............................. GGGGATATCTGCCATGTTTACACCTCCTTTCCCACA 165461 30 100.0 36 .............................. GGGGATATCTGCCATGTTTACACCTCCTTTCCCACA 165395 30 100.0 36 .............................. ACTATATTTGTGAAAATCTGAAAGGAACAGAAATAG 165329 30 100.0 36 .............................. CCTCCTTCTAGATTCTGGTTTTCTTTCTTTTCACTA 165263 30 100.0 37 .............................. AGTGTTTATTTGAAGGATGGTAGGAAAGTAGAACTCT 165196 30 100.0 35 .............................. AATAGGCAACAACCCACAGCGGTTGCAGTTTCTTA 165131 30 100.0 36 .............................. CTTTTTTGTACACATGTGAACAACTTTCTCTGTACT 165065 30 100.0 35 .............................. TCCTCATACATGAATAATTGTGCTCTGTGAACTTC 165000 30 100.0 38 .............................. GATAAGGGAAGACACAGTGAGAATATCCTCAAAACAGT 164932 30 100.0 37 .............................. CGGTCTTTGATGCTGTCGAGGATGCGAACGAATTCCT 164865 30 100.0 37 .............................. TATTGCAGGCGGAAAGAGTTTTATGACTTCGAGATTT 164798 30 100.0 39 .............................. CAGAAGGCATGCCATCCTGGTGTGGATCGCAACAGCAAA 164729 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 22 30 99.7 37 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : TTTTTCTCTATGTTTTCAAGAGAAAACAATCCCATCACTTCTTTGAGATCCAATCCCGTTCCGTACAGCCCGCGGAACAATTTGAGGGTTTCCCAAACGGTGAGGTTTTCAAAAAAGGCACTTTTCTGGAGACACACACCAATTTTTCTCTTCGTTTCTCTATCTAAGACATCCTTTCTCTCACCGAAATAGTAGATCTCCCCGGAGTCTTTCTTTCTGAGACTTTCGAGTATCTCAACGGTCGTGGTTTTTCCCGCACCGTTGGGTCCAAGGAAGGAGAAAACAGTTCCACGCTCCACGGTGAAACTTATCCCGTCCACGGCCTTCACGTCACCGTAGTGTTTCTTCAGATCAACGACTTTCAAAATCTCCAGAAAAAATCCCCCTTTGAATGTAATACTACCATACATTGAAACAAAAAAGCGCCCCTCACGGGCACTTTTGTTTAAAGGATGCATTGAAATTTGTTGAGCTTAGCGGAGATCATCGATACAAGACAA # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGAACTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGCATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACGCATCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCCGTATCGACCTTCCAATGCCAGGTACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 2 178291-178589 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 178291 30 93.3 37 .G..................G......... CTCTACCACGTTGCTTGGAAGAAGCGGAAGGTACTCC 178358 30 100.0 39 .............................. CGGTTGGTACCTTGTCTGTTTCTACGATTTTGACTACGG 178427 30 100.0 37 .............................. ATTAATGGCCGTGTAAAAATGATTGCAGAGGCAACCG 178494 30 100.0 36 .............................. AGACTTGGATTCACGTATTGTTTAATCTGCTGAAGC 178560 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 98.7 38 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CTTCGGCATGTGAAGGGCCGGAGAGGACAGCGTAAGGACAACCCAGTATCTCTTCAACGATCTCAGATACTCTTTTACCTGTTTTGATCTCTATTCCCTTTGAAAGATTCAACACCATGAAAGGTTTCACAGGTAGTCTCAGAAGATACTCTCTTATGTACTGAACGGGAATCGCTATAACGAGAATGTCTTCTTTTTTGAGCTCATCAAGATCGTTTGTGGCTCTTACGGTGATCTTCGATTCCTCCACATAAGGGCTCGTGTGTGAAACATTTATGAGATCGACGATCTCTTTCCTTCTTGCCCAGAGAACTACTTCTTCTCCGTTTTCATGCAGCATCTGTGCAAAAACTGTCCCCCAGCTCCCTGCACCGAGAACAAAAAATCTCATCTCCATTCCTCCTCGAAGATAGAATTCCCCAAGAATTTTAACAAAAAACAAAAAGCAGGGTTTTCCCCTGCTTCGTGAAATAGTGCTCTCATATCTCACGGAATCGGGT # Right flank : CCCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTAGGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAATGCCAAGTACACACATCACCTACTTTGTGA # Questionable array : NO Score: 9.00 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,1.05 Confidence: MEDIUM] # Array family : NA // Array 3 654834-654148 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 654833 30 83.3 35 T...T.G...A.........G......... AAACTATTAGATTTTCTTAGCGAAAGAATGTCTTA 654768 30 96.7 35 ....................G......... AACAACATTTATGAATACAAGATCGTCGTCCAACT 654703 30 100.0 37 .............................. TGAGAGAATTTGTTCACGTTTTGGAGCGTATGCTTTA 654636 30 100.0 37 .............................. AGGAAGTCGTGTTCACAAATCCGGACGTAAAAGTGCT 654569 30 96.7 36 ....................C......... AAATTAGAGGCAAAGAGGTTGTAATGGATGAATGGT 654503 30 96.7 37 ....................C......... TGAGTTCCCCTATCCATTCAGTATCATCCTCCCCTTG 654436 30 100.0 37 .............................. AGGAGGTGATAAAACGAAATGGGAAATTTTTCAGCCC 654369 30 100.0 35 .............................. TCTGAAGCGTCGGCAAAAATTGTTCAGGACGCCGG 654304 30 100.0 37 .............................. GCGCAACAAGAAATTTTCCGAATGTGTGTATAAAACT 654237 30 100.0 30 .............................. GCCGCCCGCCGCCCGATGTCGCAAAAACAT 654177 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 11 30 97.6 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : GGTCTTCATAGACACAAAGAACAGATCTGACAGATTCGAAAGGCAGAGGAAAGATTCTCCCTCGAGAGAGAATCCATTAGAAGCACAGATCGTGAAAGAGGTTGTGGAAAAGCTTCTCTCCATGGGGGTGAAGGAGAATTGGATCGGTATCATCACTCCCTACGATGATCAGGTGAATCTCATAAGAGAGTTGATCGAAGAAAAAGTAGAAGTACACAGTGTGGATGGTTTTCAGGGAAGAGAAAAAGAAGTCATCATCATCTCATTTGTGCGTTCGAACAAAAACGGTGAAATAGGGTTCCTCGAAGATCTGAGAAGACTCAACGTCTCACTCACACGGGCGAAAAGAAAACTGATAGCAACGGGAGATTCGAGCACGCTCTCTGTCCATCCAACTTACAGAAGGTTCGTAGAGTTCGTGAAAAAGAAGGGAACTTACGTGATCTTTTGATATGAGAGTCTATAACAAAAACATCCCCCCACTCATGTGGGGGTTATTT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCGCTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCTTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACGCATCACCCACTTTGTGAA # Questionable array : NO Score: 9.14 # Score Detail : 1:0, 2:3, 3:3, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA // Array 4 1026847-1025628 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 1026846 30 90.0 35 A.......G...........G......... TTAAGATGTCTATACCGGGCATTCTACAAAACAGC 1026781 30 96.7 36 ....................T......... GTTGAGACCATTCGTCAGGATTTTCGGGTGAATAGT 1026715 30 100.0 37 .............................. AGCGATAAGAGTTTAGTGGTAGTAACCAACATGGGAA 1026648 30 100.0 37 .............................. GTACATGGGTTGCTGCGGCAATGAATCCAGAAACCGA 1026581 30 100.0 36 .............................. TATGTGTTTATCTCCTCATCTTGCATGTCTCTGTCA 1026515 30 100.0 36 .............................. AGGCTGTGCTCGACTGAGTATACAAGGAACTTTCCT 1026449 30 100.0 36 .............................. TCCTCGACTCCGCAGCTCCCGCCATCGGAGGAGATA 1026383 30 100.0 35 .............................. CAACTGGACGAACTCGCCGAAAGTCATAAAATGCA 1026318 30 100.0 37 .............................. TTACTTTGCAGGTTCCCTGCCTGATGTCGTCTTGCGT 1026251 30 100.0 36 .............................. AGGAGGTGGGGAAGGGTTTCTTTTCGATTTGAACGT 1026185 30 100.0 35 .............................. TATGTCAAGTTACATCTACGTTACAAAGCGGTTCG 1026120 30 100.0 35 .............................. GCCTTCGACAACGACCAGGCAGGGAAGGCAGCCAT 1026055 30 100.0 37 .............................. CAGCTTATCTACTGAACCGTACAATTTCTTTATCACA 1025988 30 100.0 37 .............................. TTGGCTTTCTTGAGGGGCATTTTTTTCTTCATCGAGT 1025921 30 100.0 36 .............................. CTTTCGCGTTCGCTTTTATGCTCGCTGGAGAGTACA 1025855 30 100.0 37 .............................. AAACGGGACGTACGACAGGAGAAGCAGAACTCCAGTA 1025788 30 100.0 37 .............................. TTTGTTACGGCCTCTGCAATTATTTTCACACGTCCAT 1025721 30 100.0 34 .............................. GGGAAAAGTCGGATCAAGAGTGGTTCATCTACTG 1025657 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ===================================== ================== 19 30 99.3 36 GTTTCCATACCTCTAAGGAACTATTGAAAC # Left flank : CCATCTTGAACGTGGTCTCTGAGAGTGTGTCTATCATCAACCTTGTTCTCGTTGCAATCACCGCTGTGTCGCTGATCGTTGGTGGTATCGGTATCATGAACATCATGCTCGTCTCTGTTGTTGAAAGAACCAGGGAAATAGGTATAAAGATGGCTATAGGAGCATCAAGACTCAGAATTCTTTTGGAGTTTCTTGTGGAAAGCGTTGTGATCACATTCGTTGCTGGTGCCATAGGTGTTGCTCTGGGTATCTTAGGTTCGAACACGATAGTTAACACCTTTGGCAGTCAGTACGGATTGAAAGCCGTGATAGATCCGCTCTCTGTGATTGTTGCATTTGGAGTTTCGGCAAGCGTTGGATTGTTCTTTGGGTTCTATCCCGCATACAGGGCCTCCAGACTGAGTCCAATAGAAGCCCTGAGGTACGAGTAATTTAACCGGATAGCGGAAACACAAAAACAAACATTTGCCCCGAAAGGGGCATTTTTTGTTTTGTATCAG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAAAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAACGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGTGTTTTGAGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAATGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCTATCTTCCAGTGCCAGATACACGCATCACCTACTTTGTGAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAACTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.10,-0.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.5 Confidence: HIGH] # Array family : NA // Array 5 1061493-1063309 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 1061493 29 100.0 36 ............................. TATCAGTCGTCTGAAGTTCCTGTCCCGTCTTTGGAG 1061558 29 100.0 37 ............................. TATTATATCCTCATATGGAATGCTCGCCCAGTTTTCG 1061624 29 100.0 39 ............................. TGCACTAATTACTTTCGGTGTTCCGGCAGGTAGATTATG 1061692 29 100.0 38 ............................. TCTCTGCAGGTGAGACAAAGACCTTCACGATCAATCTG 1061759 29 100.0 38 ............................. GAAAATATCCTCAGAATCAATGGGGCTTCTAACACCAG 1061826 29 100.0 37 ............................. TTCGAATGTTTCCCGCATCGTCTCGCCCCAGCTTCAG 1061892 29 100.0 37 ............................. AGGTAGTAGGTGAGAAGCACGTTGCTTGCAGGATCTT 1061958 29 100.0 36 ............................. ATGGCAGGATGGGTTAGCTTTTGTCGAAACAACAAG 1062023 29 100.0 36 ............................. TGAAGCACGAAAGGCACTTAATATCCTGGAGCTCAA 1062088 29 100.0 38 ............................. TTAGCCTTTCTTATTCGTCTTACAGACAAACTTAACAG 1062155 29 100.0 42 ............................. TTCTTCTCGCTCTTTCGATCCTGCGGGTGGTGGGTTCCAAGC 1062226 29 100.0 38 ............................. TTTACTCCTGAATATGCTTCTTTCTTTTGTCTGCTTTT 1062293 29 100.0 36 ............................. AGGCTTGAGCTTGGGCACAACATTGAGGTTGGTCAA 1062358 29 100.0 37 ............................. CGAGAACTCTTAGAGCTTCCTTGACTCGTTCTTTTAA 1062424 29 100.0 37 ............................. GCAACTCGAAAGGTTTTTCTACAGAAAGCATGAGAAC 1062490 29 100.0 36 ............................. GATTTGTCTTTCCCTTTTGTTCAATCTTTTGCCCTC 1062555 29 100.0 38 ............................. TCAGAAGATTCGCCGAGTGGTTCGGATCGCTCCCCAAA 1062622 29 100.0 37 ............................. CAGAACGACCTCCACGTATCCTGTCGGGTACACGATC 1062688 29 100.0 37 ............................. TGCAGAATCACATCAATGAGATTGAACAGCAACTCGA 1062754 29 100.0 37 ............................. AAAATTGTGGGAGGTGTTATCATGTGGAAAGTTTATG 1062820 29 100.0 36 ............................. GAAGAGTGGGGCAGAAAAGACCGCATGGACATCCAG 1062885 29 100.0 37 ............................. GAGGTGGTGTTGTGAACAGCCTGAACGGTCTTTCCTT 1062951 29 100.0 35 ............................. TTCCCGAGACAGCATTGGAGTCAGAGAGCGATCTT 1063015 29 100.0 37 ............................. TCGATCGCCTTCTGTCTTTTCTCAGACCCAGTTTCTC 1063081 29 100.0 36 ............................. TGGTAGAATATGCGTGGATGCATATGGATGAAAGGA 1063146 29 100.0 38 ............................. ATTGTGACGTAGGGAAAAGTTGCGTCTGAAGGTACATG 1063213 29 100.0 39 ............................. AAGCCGAAGCAATTGCGCGTAACGTTGCGCTCATCCAGA 1063281 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ========================================== ================== 28 29 99.9 37 GTTTTTATCTTCCTAAGAGGAATATGAAC # Left flank : GTAGGGTCTCATTTCGGATTGTGCCTTTTCAAGGTCGCCGTTGTATCTCTTGACGAGCATGTTGAAGATGTTTTTTCTTTTATCTTTTTCAAAGTCATCCAGCGCGTCTATGGTGTAGAGCCATTTTCCAAGAGACAGACCAAGGTAGTAAAGAATTTTCCTCTGAGTTTCTTCTTTAACCATTTTGCTGAGGATTGTCCCCATTATCTTGCCCTGTTCTTCTGCGAGGGTTTCGAAATCTTGTTCCTCTCTTTCCATTTCGTAGAAGCTCTCAAAAAGACTGGATATTTCGGGATCTTTCTTCAAAAAAGCGCTTGCAAATAAGTAAACGGGATTTTTTCTGTCTATGTAATTGTCTATCAGCTTTTCACGAAGAAGAGCAACGAAGATACGAGCCACTTCGTCTATTTCGTTCGAGGAGTAAAAATCCACCTTTTTGAGAGTGAAGATACAGAGTTCTCTTTTTCTTTTCAAATCGCTGTTGTTCAGGCTTGAAAGAG # Right flank : TTTGAAAAAAACCGTCTGAAAACTCATGATCGATAGGTTTCTATCATGAATCAATAAGAAAACCCCCTCTACGAGCGGGGGCTTTTTCATTACACATTTTCTAAAATCTGGATTCAAGGGGGGATGGATGTGGTATCAACCAAAACGAGGAGAAGTATCAGAAACGAACTTTTGCCTCTTGTTGGAAAGAGAGTTTCTGTCAGAGGGAAAATCAAAGCGTTTGGTACAGCAAGAAGTCCTTTCTCGAAAAAACCTACTTGTAACAAACGTTACTTTGAGGTATTTAGATAAGAAGATCAAGGTGGATCATCTGTGAGTTGCGATTAGAAAGGTAATGGATATTGCTGCGGGAAACATCGTATCTTTCGAAGCGGATGTGGTTAAATACAAAATACTTCCCGATTTCAAAACAAAGGACGACATCATTCATCCGCGTTACAACTACGGTGTGGAAAATCGAGGAACTTCAAAGTCATAAAGAAAGCAGCTGAGCCTTCTAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTTCCTAAGAGGAATATGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-3.20,-3.10] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 1192967-1192076 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1192966 30 100.0 36 .............................. ACGATAAAACAGCACAGCAGTAATATGGCATAATGG 1192900 30 100.0 36 .............................. GTTTTTTTCGTATTTTTATGACAGAGACATGCAAGA 1192834 30 100.0 36 .............................. CGACAATGAATCCATCACGGGTTTTCAGAACGCACT 1192768 30 100.0 37 .............................. ACAAAAACGTTTCCCAAATCTCTCAGCATTCCCACCG 1192701 30 100.0 35 .............................. AAGCGCTTCTCTTGCAATTTTGGTGGGGGTGGTCT 1192636 30 100.0 38 .............................. AATGAAAGCCCAGAGTAGCGGGAAAGCCCCCGAAAAAA 1192568 30 100.0 36 .............................. CGTCAAAGCCCTAGCGTGCGACCTCGTTGCTGTAGC 1192502 30 100.0 37 .............................. AAGATGCATTACAACTGTATAGAGAACTCTTACCAGG 1192435 30 100.0 36 .............................. CACCAGACGACATAACAGAAGAGGAAAGAGAATTTG 1192369 30 100.0 35 .............................. GATATAACCTCTTTCCTGAAGGAATCGTCCAGTGA 1192304 30 100.0 37 .............................. GATGTAGCGAATCTCCGACGTCGAAAACAATCTCATC 1192237 30 100.0 36 .............................. AGATTCGAGCAAGATTTGGCCATATGGTCGAAGCAA 1192171 30 100.0 36 .............................. GACAGATACACTGACTTAGGTTTACCACCAGAATTT 1192105 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 36 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : AAATAAGGAAAATTCTGAGACTCTACGATGTGGACAGTGCGGATGGTATTTTCCGGTCGAGTGATGGAAACTTCAAGGGCTACATCAGCCTGCCGGATCGTTATCTCTCCAAGAGAGAAATAAAAAAACTCTCGGCGATTTCTCCAAACACCACAGTCAACATCATAAAAAACAGCACGGTTGTTGAAAAATACAGAATAAAGCTTCCACCAACGATCTATGGATTTGAGGAACTCCGATGCAAAAACGAGAACTGCATCACCAATCCCGCACACGGCGAAAATGCTTCACCTTCCTTTGTGAGAGACGAAAAAGGACAGTTTATATGCGAGTACTGTGAAACACCGCATTCTTTCGAAGAAATCTGGAGTATTTGAGAAATCTACAAGAAAAAGAAAGCAGGGGAATTTTCCCCTGCTCTTTTTATTTTATAACCCTTTAAAAGCTTATGTGAACTTGGTTAATGTTTCTATACCTCAAATCAGGCCCGTTAGAGCCGG # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACAATCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGATGATAAATTATATCAACCTACGTCAGGGCATTTTGGGATGTTTTTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCTAATTAAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCCGCATGAAATTCTTCGTTACCGGTAATTGCATACTCTGAATCAACCTTCCAATGCCCGGTACACACAATACCTACTTTGTGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [65.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 7 1304325-1304755 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1304325 30 73.3 37 TG...TG.......G.A..C.C........ TGGCTCAATATCGTGGACCACGACTACAGGGAGGAGC T [1304328] 1304393 30 96.7 36 ....................T......... TGTCGGCGTATTCGAAAAGGTCGTAGTCTCCTCTGA 1304459 30 100.0 36 .............................. GACGAAGGATTCGAGCTTTTCGTACAAGAGCAATTC 1304525 30 100.0 36 .............................. AGACGTACATTTTCGATACAGCAGAAGGAAAAACAA 1304591 30 100.0 38 .............................. TAGCTCATCAGGAGACATCTTCTTCAGGTCTTCGAATG 1304659 30 100.0 37 .............................. ACAGAGGGCATGTTCGAACTTCAACTCGCAACAGAAC 1304726 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 7 30 95.7 37 GTTTCCATACCTCTAAGGAAGTATTGAAAC # Left flank : TCTTGTGAGCCATGTTTCCATGGCAAAGTTCAAAGGCAGAGACGGTTCGTGGTGAATATCGAAAGAAACTTCGACGGAAAATGATTTCATAGAAGAAACTGGTACCGGAAGTTTCGAACCTTCTGCTGTGTGATTTTCCCATGGTTTGTAACCGTAATAAAACTCGGGATAACCGAGAACATACCTTTCCGGTTCTTTCGGAGAAAGATTCTGAATGTCCGCATCGAAAGTTATCTTTTCACCGTCGAATTTCATAGCTACAGAACCGGAGTATTCCTTTATGTTCCACAGATTCAGCTCCATGGAAAGGGGAATGCCATTCCATACAAAATCCGATGTTCCCGGTTTTGTCATCAGTACCACCATTATCACCTCCAGAAAACATCTTATTATGAAAATGTTTACATTCAAAATCTGAAAATTCGCAAATAGAACTAAATACACCCAAAAATAAAAAAACAGGGGTATTAATCCCTGCTTTTCTCTTTTTATCGAATTTT # Right flank : CCCGTTGAGTTCAAAAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCCAACAATGAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCAGGGCATTTTGGGGTGTTTCTGGTAAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTGTTAACTTCTCGAATTCAAAGCACTTACACGTCGTTGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCACAAACCTGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGTTCTTCCAGTGCCAGATACACACATCACCCACTTTGTGA # Questionable array : NO Score: 9.05 # Score Detail : 1:0, 2:3, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAAGTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.30,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.78 Confidence: HIGH] # Array family : NA // Array 8 1397005-1395574 **** Predicted by CRISPRDetect 2.4 *** >NC_013642.1 Thermotoga naphthophila RKU-10, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1397004 30 73.3 36 T...TTG.G.T........TG......... GATGTACCACGATTGGTATGTCTCCGGCGTCGGAAT 1396938 30 100.0 36 .............................. CGCTGCGGCTTTCTACCATACACGGCTGCGAAGTAG 1396872 30 100.0 37 .............................. TCTCGGATATCAAAATGCTTGAAATTGTTGTTGATTC 1396805 30 100.0 37 .............................. ATAGCTCGATATATGGAGTTAAAGTTACTGGAAACTC 1396738 30 100.0 36 .............................. CTTTTGCTTCAGAAAGACTTTTGTCAAGCAAAGGCG 1396672 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 1396605 30 100.0 36 .............................. GCGGTATAGCGTCGGTACTAGACATAACGTATTCCG 1396539 30 100.0 37 .............................. GACATATCGGTTGTTGAAAAGGAAGGTGAGAAATATT 1396472 30 100.0 35 .............................. AAGGGAGGAGGGATTTTTATGACGGTAAAAGTTTC 1396407 30 100.0 37 .............................. CCGGAGTTATGGGAGGAGGGGTATACATTCCTGCCAG 1396340 30 100.0 40 .............................. TGTTCCCCGTAGGTTATATGCGTGGTTGGTGGAATCACAA 1396270 30 100.0 37 .............................. AAACAGCCCCTGACGGGTCTGTGTCCTCACAAGACTG 1396203 30 100.0 35 .............................. GTATGCCATAATTGCAAATGCAACTGCAAATAGAT 1396138 30 100.0 36 .............................. TGTTTTCGATTTTAGTGGTTCTATGGAAGGACTTAG 1396072 30 100.0 37 .............................. TTTGCAAATGTGTTGTGTCGCAGTTTGCAAACGACAC 1396005 30 100.0 35 .............................. TAGCAGTTCACTCATCGTCATCAACCTCCTCTCTG 1395940 30 100.0 37 .............................. CCAACCTGTTCACACCACGCATTCTCGAGCGCTTCAC 1395873 30 100.0 38 .............................. GTAGAGTTTAGACCAGATGGGAAAATAGTTGTTACCTT 1395805 30 100.0 37 .............................. TTAGTATTTTCGTAGGTTATCACCAGGCGGTCTGGTT 1395738 30 100.0 38 .............................. TGTTATATTGCTTGTTGTAGCAAGTTCTTCCCATTTAG 1395670 30 100.0 37 .............................. GGTGGTACACCGACAAGGCCCGCCAGTTGCGAACAGA 1395603 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 22 30 98.8 37 GTTTCCATACCTCTAAGGAATTATTGAAAC # Left flank : CTTCCTTGCAAAAAGTCTGAAGATATCCGGGCTGCTTCCTGCTCTCGCCGTTGGATTTCTCATGTCAATCACCATTGCAAGCTTCGGTATCGCGCTTGCCTTAAAAATGGAAAGCACTGAGGGATTCCAGATGATCATGATGACCTTGATGATGCCCCTGGTCTTTCTGAGCGGTGCGATGTATCCTATCGACTCCATGCCAAGCTGGATGAAGGCTCTTGCCTACATAAATCCTCTCACCTACGCGGTGGACGCCTCGAGAGGATACTTGGTGGGAGAGAAAGTGATGAAGTTCTCCTTCGGTCTCGACTGGGGAGTTCTCTCAATCTTGATGCTGGTAGGCCTCATCCTCGCAATGGAAAGCTTCGAAAGAGCAAGGATAAGTTGAGATATCAACAGCAAAAACGAAGGCAGGGGGTTTCCCTGCCTTTTTGTTTTTTTATGGAGCTTCATTGAATATGAAATGCTAACAGAAACAACGATTTCGGAAAAGAAGAAGT # Right flank : CCGTTGAGTTCAAGAGAAATTATACCACAAACACACTCTGAAAGCAAGATGTTTTTTGACCTTCCATATCCTCCCTTTCCATAAACCATTCTAACACACAAGAGAGCACCTTCAAGTACTGTTTGGAAAAATGGAATAATTGCATAGTCAAACAAGAAAAGAACACAAGCAAAAAACAGAAGATAAATTATATCAACCTACGTCGGGGCATTTTGAGGTGTTTTTGGTGAAAATCGATTAGTTCCATGTTTCACAAATAGATGAAAGAAGGTATTCCTCAGTGTGTTAGAAGTTAACTACTAATTTCTCGAATTCAAAGCACTTACACGTCATCGATTACCACAAATTCTCTTCATATTGTCTCTTCATATCATCCATTATTCCCTTTTTAACGCATAGCTTCCGGTACCAGAAAGGCGCATGAAATTTTTCGTTACCGGTAATTGCATACTCTGTATCGATCTTCCAATGCCAAGTACACACATCACCTACTTTGTGAA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCCATACCTCTAAGGAATTATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.5 Confidence: HIGH] # Array family : NA //