Array 1 186303-183342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBR010000007.1 Salmonella enterica strain L3-26 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 186302 29 100.0 32 ............................. CCCCACAAATCACTGGTCGATTTCGTCGCACG 186241 29 100.0 32 ............................. GTTGCGACTAAACCGGACCAGCGCCCGCCCAC 186180 29 100.0 32 ............................. CCAGTGCTCGCTTGCTTCTACCCGTCCCGATC 186119 29 100.0 32 ............................. GCGGTTTTATTCGGCAGGGCATTGAATTTAAT 186058 29 100.0 32 ............................. AATTATCTATTTTTCTGGCCCGTTTTCAATGC 185997 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATATG 185936 29 100.0 32 ............................. GCTTTGCATACGTCACTCATAGACAAATCACG 185875 29 100.0 32 ............................. CGATTCTGGTAACGTCGCTGTACTGCCTGACA 185814 29 100.0 32 ............................. GGCGCATGAAACAACCGGCGGGGATCTCTATT 185753 29 100.0 32 ............................. ACAGCGTTAAAATGACGCCCGACGTTGTGGTG 185692 29 100.0 32 ............................. AGGGCTAACACATCACCATTATTACCAAATTC 185631 29 100.0 32 ............................. GACATTGCCCGCTGGGATGCGCGGCAACTGGA 185570 29 100.0 32 ............................. AATTGCCTTTGCTGCCCGGCTCTTCTACGGTC 185509 29 100.0 32 ............................. AGATGAATAACGCGATTTACGAGGTTACGTAT 185448 29 100.0 32 ............................. ATTAAATACCTGGAAAAATACCCCAAAGGGGC 185387 29 100.0 32 ............................. AAAAATAGCGATAACGCGCCAGATCGTGAGGT 185326 29 100.0 32 ............................. TCATTTTTTATTTTCACGTTCGGCTTTCTCAC 185265 29 100.0 32 ............................. TTAAATCGACCTACCTGTTAAACGCGTCAATG 185204 29 100.0 32 ............................. TTCGCAGTAACAGTGTCGTTTTTATAACCGAC 185143 29 100.0 32 ............................. GCGGCATTAATGCGGGATTGTGTTTTCTGAGC 185082 29 100.0 32 ............................. ACGGCAGAAACAATGGCGTCAGTAGCTCAGGA 185021 29 100.0 33 ............................. CAGTCAATGAGACTTTTCACACTGATAATGTTG 184959 29 100.0 32 ............................. CCCCTATTCCTGATCATCGCGCATTTGGCGGC 184898 29 100.0 32 ............................. ACCACCACGTAGCCGTAGGCTGTCGCCAGTTG 184837 29 100.0 32 ............................. GAATTACGTTGCGAACAGCGCGGCGAGAGACG 184776 29 100.0 32 ............................. CGGATTGCATTCAATAAACATGTAAATAGGAA 184715 29 100.0 32 ............................. TTACCGACACCTGCGTGGCTAGCGTTTTTTCG 184654 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 184593 29 100.0 32 ............................. CCTGCGTGCGTGCAACGGGTAACTAAGGGGAA 184532 29 100.0 32 ............................. CATTGGGTAATTATATTCGCAATTTAAGCGAT 184471 29 100.0 32 ............................. ATATTTTAAACCAGACTGACGCGATGATCGTT 184410 29 100.0 32 ............................. CCATCAAAGCTGCTGCGCTGGTGGCATAACCC 184349 29 100.0 32 ............................. ACTACGCGGCATGGCTGAACCCCGGATTCAAG 184288 29 100.0 32 ............................. CCCCAGGCGGTGCCTACGTCGGATGAAGAGCC 184227 29 100.0 32 ............................. CCGTGGAAAGAACCAGAGCGTTGGTTATTGGT 184166 29 100.0 32 ............................. CTCCCAAACCTCTACAGCGCTACCAACAGGAA 184105 29 100.0 33 ............................. GATCGCCCACCGGCATAAACGCGATAGCCGCGT 184043 29 100.0 32 ............................. CTGTTCCCGATCGCTTTATATCGGGGGCCATC 183982 29 100.0 32 ............................. TACCAGACGGACAGCTACGATACCGCTGACGA 183921 29 100.0 32 ............................. GCAGTACTGGCTCTAAATTTAAAACTGGTCAG 183860 29 100.0 32 ............................. TGGCCCACGTGCGCGGAGACGGCAACCGGTTC 183799 29 100.0 32 ............................. TCTCGACGCCAGATTTAATATTAATTCCCGCA 183738 29 100.0 32 ............................. CAGACGTAGAGATTGAGAACACAAATGACTCA 183677 29 100.0 32 ............................. GATTGCTCAGATTGGGAATTTGACCAGCGACC 183616 29 96.6 32 ........................G.... ACTATTTTTCAGGTGAATTACAGCGCCGCAAC 183555 29 100.0 33 ............................. GCGAAAAATTGACGCTATCAGGGAGAGCGCCGG 183493 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 183432 29 100.0 32 ............................. GCCGTGAACGCGTCGCCCGCTTTTTTGTAGCA 183371 29 96.6 0 ............T................ | A [183344] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCCCTGGGGGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTAGTCACGGAAAACGTACCGCCGCGCCTGCGGGGTCGCCTTGCCGTCTGGTTACTGGAGATTCGTGCCGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTTTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 203935-202562 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIXBR010000007.1 Salmonella enterica strain L3-26 contig00007, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 203934 29 100.0 32 ............................. ATTAAATTTTCGGGAACGGCGACGGAATCCGG 203873 29 100.0 32 ............................. AAAATCATCATGGCCAGCGCTGGCGCGCTCGC 203812 29 100.0 32 ............................. AATGATTATATCGATCGACCAATCGATGAGCA 203751 29 100.0 32 ............................. TCGGTGAGACAAATCATTCCAGATTGATCAAC 203690 29 100.0 32 ............................. AATTTAAACAGTAATTTAAAATTGTTAGCGTC 203629 29 100.0 33 ............................. GCAACGGCGGCGCGGCATTCTGCGGTGCAAATA 203567 29 100.0 32 ............................. GATTCCAGCGCGCCAAAATCAGGAGATTCCGT 203506 29 100.0 32 ............................. CCCCCGGCATTCGGCTATGCCTATTCATATGT 203445 29 100.0 32 ............................. TGGTCACTACCGTCTATCTCTTCCGGATACAC 203384 29 100.0 32 ............................. AACCCGGCAGCAGGGGTAATTCATACAGCATA 203323 29 100.0 32 ............................. ATTTGGTGAAGGGCGCATTTGAGGACCCGTTA 203262 29 96.6 32 ............T................ CTTGCAGCCGAATACGGTATAGAGTGGGACGG 203201 29 100.0 33 ............................. GCCTGTCCTGCGTCAGCGTTACCAGCTTCATGC 203139 29 100.0 32 ............................. AAATTCAATTACGACTCGCTGCCTGACGGGGT 203078 29 100.0 32 ............................. ATTTTGAGCGGACGGGAGCTGGCCGAATGACC 203017 29 100.0 33 ............................. CGGTTTTTACTTTTGCTGCATTCCGCCTCCCGG 202955 29 100.0 32 ............................. TCCTGGCAGGAATACAAACTTGTGATGCTGCG 202894 29 96.6 32 .............T............... ACCGCAGGCGCAGCGGCAATATTCTGGTTCAA 202833 29 96.6 32 .............T............... TCGTTTCTGGGAGCGGGTCTTTCCAGTATTGC 202772 29 96.6 32 ...........C................. CAGGGGAAGAGGTTCCGGCCCAGCAGTTCTAT 202711 29 100.0 32 ............................. CTGCTGGGTCGTGTTTGACTCAACGCTCCCCA 202650 29 100.0 32 ............................. ATTTTAGAATTACGCATTGAGCCGATGATGTA 202589 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTCGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCATGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCACTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //