Array 1 188238-188997 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZT01000002.1 Paenibacillus pini JCM 16418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 188238 32 100.0 35 ................................ ATAAGAAGAATAAAAAAGATAAGGACGCGGCATAT 188305 32 100.0 34 ................................ TGTGCTATGCCTGTAGAGTTTGCTGAGGCATTCA 188371 32 100.0 34 ................................ CAATTATCAAACTGAAATTGCTAATAAAAGTAGG 188437 32 100.0 34 ................................ GCCGCATTCACTACACTCGAAGCTGCGGTACTCT 188503 32 100.0 34 ................................ TCCTGGATCAGGTGTTTCCGTGCCATTACCTAAA 188569 32 100.0 34 ................................ ATCGACTCCACATTAGATAATAGATTTAACGCGA 188635 32 100.0 33 ................................ CCCCTAGAATGAATGTTTTTGGATGCAAAAAAG 188700 32 100.0 34 ................................ AATTTATCTGGTTAACGTTGATATGCCTGCAAAA 188766 32 100.0 35 ................................ ATTTAAAACAACAGATCACCGTCTTTTGGAAAATG 188833 32 100.0 35 ................................ ATAAGGGTCGATATGATAGATATCTTCCAGTACCT 188900 32 100.0 34 ................................ CATTGTCCATCAGTAATGGCATCACGGGCTTTAA 188966 32 84.4 0 ...........C....A.T....A.A...... | ========== ====== ====== ====== ================================ =================================== ================== 12 32 98.7 34 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AGGCCATCATTGATCTAATGGAAGCGGATTCTTCAAGGCTATCGCACCGAAATTCCTTTAATGTGACTGCGATGAGCGTGGACCCCGAAGCTATTGCGGCTGAGATCCGTAAGCAGATGCCAGACTTCACCTTAGACTATCAGATTGATCCGGTAAGACAAGGAATTGCCGAGAGCTGGCCGCATTCGATTGATGCGACGGCTGCAAAGACGGAGTGGGGCTTTAAGGCTCAGTACGATTTAGAAGCGATGACGAAGGATATGTTGGTTCAGTTAGGGAAAAAGGGAGAATTATTTAAGAGGGGTGTAAGTTGAAGGATCAATAATTTCTAGTGCGAACCCGAAGCACACATGAATTCCCTAGGAGGTTCGCACCTGAATTTGTTGATAAAATGGTGCAATTTGGTTTATATTGGATTCTAAGATGAGTGTGAAAGTATAAATATGTTTATATTGAACGAAAAATCGTTTGAAATTACTATTTTCATATGACTTTTCGCA # Right flank : TCTTTGCAGTAGCGTTGTTACAGAAACGGGTGTCTGGTCGCAATCCGTATGGAATGCAAATGTAATCCCTAAAAAAGTCTTACCTTTCTCATGCTAAGCATGAGAAAGGTAAGACTTTTATGTTTCAAAGAGCAGGTTCCCCTGCTCCAAGCAAAGAAAGAAATCTTGAAAAATATTTGTATGTGCGAATGGTGAGTTATTTGCGCAGTAGACTTGATTTTATATAAATCTTCTGATAAATTGGTATAATTAGTTGTCACACTTTGTATGAAGTGTGTGGATTGAAAATGATACATTGGCATAAGAGAGTTTTAAAACAAAGCGCATCCTCTTAAGGATGCGCGATCAATCATTGTTAAAAGTGAAATACATAATATTAAGTAAAATCTAAGATGCCATATTCAGTACAAAGTCAAAGGTAGAGATGAAGGAGAGGAATATGTGATAAATGGATTTTATTTAGACGAGTCCGGAAATAATGGATTTGGTGATATGCAACA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 198840-199942 **** Predicted by CRISPRDetect 2.4 *** >NZ_BAZT01000002.1 Paenibacillus pini JCM 16418, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 198840 33 97.0 35 .........T....................... ATCATTAGATATGGTTAGCACTGTTGTTTGTTGTG 198908 33 100.0 34 ................................. ATTCATAGACCCCCGATCCCACAATATTAAATTA 198975 33 100.0 33 ................................. ATATTAAAGCGGATGTAAAATACATTGGATGAA 199041 33 100.0 33 ................................. ATATTAACAGGTTCGTTGTGGTTTGGAGTCCTC 199107 33 100.0 30 ................................. AGTCGTGGTAATGATAATTTTCGGAAGGAA 199170 33 100.0 34 ................................. TGATCTGGATAACTTGCGGTATGCCTTACCGTCT 199237 33 100.0 35 ................................. ACATACAACCACCTAACTCCAGTGGAGGTAAGGTC 199305 33 100.0 34 ................................. ATACGTAATACCGGATTCTGTCCCTACTCTAAAC 199372 33 100.0 35 ................................. CTTTATATACACTGAAAATACTTATAATAAATTTG 199440 33 100.0 35 ................................. TTGAGTAATCTTTTGCACTCATCAGAGCAGGTAAT 199508 33 100.0 33 ................................. GGTCCGGAGGCGGTCAAATCACGAAGGCTGACG 199574 33 100.0 35 ................................. AGTGGGCCTCCATGGCTCTATATATTTCACTTCAT 199642 33 100.0 33 ................................. GGGAGCTCCGGTCTTTTTTGTTGCACATGATAC 199708 33 100.0 35 ................................. TTTAGGGATAATGATTTCGTTTTTATTGTCAGTTG 199776 33 97.0 35 .........T....................... GTAGATATTCTCATTTACAAATGGTGCTACCGCCC 199844 33 97.0 34 .........T....................... AAATAAATATAAAAAATCCTAAGAGGAGATATGA 199911 32 87.9 0 ...........C..A...........-A..... | ========== ====== ====== ====== ================================= =================================== ================== 17 33 98.8 34 GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Left flank : GGAAGTAGGTGTAATGATTGCTTATTTTGATTACGTATGATGTGAGCACGATAGATAGTGAAGGCCGAAGAAGGCTATTTAAAGTGGCGAAGAAGTGTGTGGATCATGGTCAGCGAGTGCAGAACTCGGTGTTTGAATGCATACTGGATGCTGCCCAATTTAGACGATTAAGATTCGAACTGGAAGAATTAATTGATAAGGATACAGATAGTCTTCGATTCTATAACTTAGGCGATAATTACAAAAGTAAAGTTCAACATGTGGGTGCCAAAGATTCCTATGAGATGGGTGATCCATTAATACTGTAGCAGGTGCGAATACCAAGCTCACATGATTTTCCTGGGGGATTCGCACCTCAGAATATGTCGAAAACCTTTATTTTGTGACCTTTTGGCAACGATTTTTCGTTAAGTTGTGATTATACAGCCTACATTAGATGTGAAAGTATCGAAAAAACGTAATTATACTATTGGGTTACTGTATATACGTTCTTTTTCGCT # Right flank : TTGACTTATATGAGGAGGGCGCGAAATTGCGCTGTCGTCGCGCTCTATATGGTAGTGAATTGAAATAATCAAATCATAGGATTGTTGACTTACGACTGGTCGTACTCTACATGAGTTTGTTCGCCTTCTCATCCGTGCGCTTAAGAGCAGCTTCATGGAAATTAATAAAGCTTGTATAAATAATCGTTAACAGGGAAAACTCTTTCTAGAATAAATAATGGATGGGGACGTGAGTTGATGTTCTGGACGATTTTCGTTGTGCTTTTGATACTATGGATATTAGGATTTTCTTTTCACATTGCGGGTGGTTTAATACATATCCTTTTGGTTATCGCCCTCATTGCATTAATTTACAAGCTTGTGACAGGTAGACGTCCGTAAGGATGAAATGAATTACTGAAGTTACTCACTTAGCAACCTCAGACATTGGGGTTGCTTTTTTTCATTACAGTGTAGAGCTTCTGCTGTTACATTCATTTGGAATTATGCTGGATGAAAGA # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCCGTATGGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.20,-6.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : NA //