Array 1 178381-178958 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUO010000014.1 Erwinia amylovora strain IH-3-1 Ea_IH-3-1_contig_14, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 178381 29 100.0 32 ............................. GATGCCATTGCACAGGCCAAAGCGCAGTATGA 178442 29 100.0 32 ............................. ATTTCAGGCTTGCCGCCCTCGCCTACCCGGTA 178503 29 100.0 32 ............................. TACCGAGACAATTTCTCTGCTGTTTCAAGAGA 178564 29 100.0 32 ............................. GGCTTTGCGTTGTTACTCAATATGACGAACTA 178625 29 100.0 32 ............................. TCGTCCAGATAATGGGAACACCGCGCAGGACG 178686 29 100.0 32 ............................. CTGATTTTAGCGTTAAATATTTTCCTGAATTA 178747 29 100.0 32 ............................. GCTCGCGCTGGCAATGTCTGCTCGAGATATAT 178808 29 100.0 32 ............................. CGATGGGAAAATACTAAAAACTGGAATTGCTG 178869 29 100.0 32 ............................. ACTCGCTTAGGCTCTGAGTGCCGTTAAGAAGC 178930 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGCCCACGAAAAAGGCAGGGGCGGTTAACTCCCTGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCGCGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : GAAAATTCTAGCTATAAAAATGACTTAACAGAGTGTTCCCCGCGTGAGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.14,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 11293-10471 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUO010000048.1 Erwinia amylovora strain IH-3-1 Ea_IH-3-1_contig_48, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 11292 29 96.6 32 ..A.......................... TCTCCCGCAGCAAAACAGCAATCGAAAAACCC 11231 29 96.6 32 ..A.......................... AGCTGAATTTCCCCGATGCCGCTGGAATTAAA 11170 29 100.0 32 ............................. TCTATTTCACGTGCCAGCCGGGGATGTGATCG 11109 29 100.0 32 ............................. ATACTCCCTCTCAAGGATTGCGGCTTCTGCTT 11048 29 100.0 32 ............................. AGCCCAGGGGGCAATTTCCGGGCTGGAAAATG 10987 29 100.0 32 ............................. CCGACAAATCAGCGCTGGGGAATTCCTCGTCG 10926 29 100.0 32 ............................. CGGAAACTCCGCATCCATGCCGAGGTGTTCAT 10865 29 100.0 32 ............................. GCCAGCAGTACCGCACCGCAAAGTTAAACGTT 10804 29 100.0 32 ............................. GGCAGGAGCGGTGGGACATTCGTAACCAGATT 10743 29 100.0 32 ............................. TCCGCGCACGAATCCGCAAAGGGGGCGTTGAG 10682 29 100.0 32 ............................. ACAATATTACAAAAGACAAGAAAGACAATAAT 10621 29 100.0 32 ............................. ATTCTTTCACATTCGACTATCGAATTTTGCAG 10560 29 96.6 32 ..................T.......... TGATAAAGTAACGTTCCGAATGGCGCGTGATG 10499 29 96.6 0 ...........A................. | ========== ====== ====== ====== ============================= ================================ ================== 14 29 99.0 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGCCGTTGCAGATGACCAGCTTGGAAATGCAAT # Right flank : CCATGCCGGACAGTATTGAGCAACTGGCCGACGCCGCTTTACAGGCGCTGGATACCATATGTGACAAACAGATCGCGTTTTTTGGTCACAGCATGGGGGGACTGATTGCTGTTGAACTGGCGCGCAAGATGGAAATCTGTTGGCGCAAACCCGCGCGCGCGCTGTTTGTTTCCGGTTGCCGTGCGCCTGGCGAACCGCTAACGCGCTGCCTTAGCGGATTGGATGATGAGCTGTTTATCAGACAGTTGGCCGGTTTAGGAGGCACAGAATCCGTATTGCTGGAACAGCCGGCACTATTGCGGCTGTTTCTATCCACGTTACGTCAGGATATTGCGCTGTGTGAACGTTATGCCGGGCCACCCCCTGCACCTTTGCAAACGCCAATCCATGTTATATGGGGAACGGAGGACGACTTAATTACGGATGTGATGATCGATTCCTGGCGTAAATTTTCTACTGAGGGGAACGTCTTTTTTTATCCTCATCAAGGTGACCATTTC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 457-2867 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUO010000034.1 Erwinia amylovora strain IH-3-1 Ea_IH-3-1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 457 29 96.6 32 ..........T.................. CGTTTAAGAGCTGTAACAAAAGCCAGGATGGA 518 29 100.0 32 ............................. CTGTCTATGCCAACGAATACCTGCCGCAGGTT 579 29 100.0 32 ............................. AACCATAGTTCCTATAATTATCTTTCTGTTGT 640 29 96.6 32 ............................A ACCATCAGTTCCCTAATAATGATATCGGTTAT 701 29 100.0 32 ............................. GCGGCGATTTAAAACCGGGCGCAATATACAAA 762 29 100.0 32 ............................. CCTTGGCTGGAGCCGTGACAGGGCAGCTGAGG 823 29 100.0 32 ............................. TCATTTTTATAGCTAGAATTTTCCTTTGCTTC 884 29 100.0 32 ............................. GGCGGGGGCAGGCAGTGCACAGGAAAATGACA 945 29 100.0 32 ............................. TTCCTGCTGTGATTGCAGCAAAACCTAAATTT 1006 29 100.0 32 ............................. CTAATCATAGGTGTCGCTGCAGTCGTTGGGAT 1067 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 1128 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 1189 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 1250 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 1311 29 100.0 32 ............................. TCTTTATGACGCAAAGCAAGCCTCAGCCGAAC 1372 29 100.0 33 ............................. TGTATCTGTCAGTGTGAGAATCTGCGCGTTACT 1434 29 100.0 32 ............................. CTCTGCATATCCATTGTGTCTTTGTCTGACAT 1495 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 1556 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 1617 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 1678 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 1739 29 100.0 32 ............................. CTGTTTATGAAAAATGCCAACAAACAGGAAGC 1800 29 100.0 33 ............................. ATTTTTCAGGAACGGGCCGACACGAAAATTTAT 1862 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 1923 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 1984 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 2045 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 2106 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 2167 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 2228 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 2290 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 2351 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 2412 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 2473 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 2534 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 2595 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 2656 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 2717 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 2778 29 96.6 32 .........A................... ATGATGGAACTGATAGTTTTATTAGTTGTCGA 2839 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.1 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CCCCCCACCCCCGCCGGATGCCCAGCCGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTCTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAACCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAG # Right flank : AATGATATGTCTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAAGGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 12332-12660 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEUO010000034.1 Erwinia amylovora strain IH-3-1 Ea_IH-3-1_contig_34, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12332 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 12392 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 12452 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 12512 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 12572 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 12633 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATCCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTTAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //